Wall clock time and date at job start Wed Apr 1 2020 00:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00214 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99907 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00192 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47362 * 180.02562 * 10 8 7 12 12 C 1.76194 * 100.00211 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00066 * 0.02562 * 12 11 10 14 14 C 1.38801 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46644 * 90.00359 * 16 14 12 18 18 H 1.48495 * 109.47399 * 210.00043 * 16 14 12 19 19 H 1.48497 * 109.47082 * 330.00705 * 16 14 12 20 20 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 21 21 C 1.34777 * 119.99828 * 274.72131 * 20 2 1 22 22 O 1.21613 * 119.99962 * 0.28066 * 21 20 2 23 23 C 1.47381 * 120.00222 * 180.27565 * 21 20 2 24 24 C 1.47017 * 127.19386 * 180.02562 * 23 21 20 25 25 C 1.34180 * 105.95562 * 179.97438 * 24 23 21 26 26 O 1.34218 * 109.12148 * 359.97438 * 25 24 23 27 27 C 1.33658 * 110.91048 * 359.76514 * 26 25 24 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 36 36 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 37 37 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 38 38 H 1.09006 * 109.46811 * 299.99911 * 10 8 7 39 39 H 1.08998 * 109.47055 * 60.00105 * 10 8 7 40 40 H 0.96995 * 120.00281 * 179.97438 * 15 14 12 41 41 H 0.97001 * 120.00384 * 95.00578 * 20 2 1 42 42 H 1.07997 * 127.02568 * 359.93912 * 24 23 21 43 43 H 1.07991 * 125.43914 * 179.97438 * 25 24 23 44 44 H 1.07989 * 125.80216 * 180.26754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2078 -1.7964 -3.6464 9 8 5.6047 -2.3899 -4.5153 10 6 7.7097 -1.6900 -3.7099 11 16 8.3131 -2.5428 -5.1881 12 6 10.0447 -2.2673 -5.0149 13 1 10.4210 -1.7100 -4.1698 14 6 10.9253 -2.7675 -5.9640 15 7 10.4668 -3.4472 -6.9938 16 14 12.7612 -2.4749 -5.7808 17 1 13.3636 -3.5846 -4.9990 18 1 13.3900 -2.4180 -7.1248 19 1 12.9893 -1.1897 -5.0726 20 7 2.0183 -0.6906 1.1962 21 6 2.1523 -0.0169 2.3557 22 8 1.8630 1.1631 2.4103 23 6 2.6493 -0.7101 3.5576 24 6 2.8550 -0.1342 4.8946 25 6 3.3152 -1.1351 5.6605 26 8 3.4053 -2.2504 4.9192 27 6 3.0084 -2.0219 3.6636 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.7863 -2.3843 -2.5200 36 1 3.6401 -0.8741 -3.4508 37 1 6.0172 -0.7561 -1.9300 38 1 7.9980 -0.6397 -3.7537 39 1 8.1443 -2.1494 -2.8222 40 1 11.0822 -3.7964 -7.6572 41 1 2.2491 -1.6318 1.1526 42 1 2.6733 0.8862 5.1981 43 1 3.5721 -1.0560 6.7065 44 1 2.9793 -2.7512 2.8677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756276524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:45 Heat of formation + Delta-G solvation = -76.076891 kcal Electronic energy + Delta-G solvation = -25418.999529 eV Core-core repulsion = 21463.825011 eV Total energy + Delta-G solvation = -3955.174518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.00623 -40.06717 -39.17392 -37.08394 -35.01011 -33.51940 -32.55597 -32.43394 -31.12597 -29.88668 -29.10739 -26.06486 -25.42772 -24.41470 -22.14803 -21.95411 -21.39798 -20.60786 -20.27135 -18.86959 -17.83358 -16.92963 -16.63279 -16.51961 -16.25857 -15.87281 -15.65050 -15.29534 -15.08410 -14.81079 -14.57341 -14.13576 -13.95102 -13.77771 -13.53009 -13.37562 -13.06944 -12.95035 -12.77450 -12.61835 -12.55318 -11.93021 -11.82791 -11.71991 -11.24561 -11.10084 -11.06428 -11.03146 -10.76374 -10.39927 -10.29597 -9.82443 -9.57264 -9.40552 -9.29091 -9.07851 -8.90284 -8.24645 -6.50968 -6.22409 -3.93036 0.86331 1.61468 2.42644 2.70787 2.96446 3.02397 3.08739 3.21797 3.27430 3.31678 3.69104 4.07452 4.16846 4.19773 4.25555 4.53582 4.57743 4.58740 4.86293 4.97592 5.02516 5.11361 5.12720 5.17887 5.19682 5.25605 5.33293 5.35545 5.40471 5.53149 5.61440 5.68344 5.79495 5.80460 5.83104 5.89766 5.95925 6.08960 6.13063 6.45151 6.60361 7.05789 7.58892 7.69103 7.81600 8.34529 8.60023 9.22910 10.85009 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.001775 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.443186 B =15774.394124 C =17291.218623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.125 4.125 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.740 5.740 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.154 4.154 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.722 5.722 21 C 0.588 3.412 22 O -0.535 6.535 23 C -0.237 4.237 24 C -0.166 4.166 25 C -0.039 4.039 26 O -0.173 6.173 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.398 0.602 42 H 0.160 0.840 43 H 0.210 0.790 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 5.025 24.086 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.395 5.395 8 C 0.317 3.683 9 O -0.393 6.393 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 N -0.374 5.374 21 C 0.376 3.624 22 O -0.412 6.412 23 C -0.242 4.242 24 C -0.186 4.186 25 C -0.105 4.105 26 O -0.068 6.068 27 C -0.048 4.048 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.232 0.768 42 H 0.177 0.823 43 H 0.226 0.774 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.717 4.528 22.589 30.983 hybrid contribution 2.176 0.815 1.401 2.713 sum -18.541 5.343 23.990 30.787 Atomic orbital electron populations 1.22181 0.94945 1.02312 1.02806 1.21024 0.94137 0.97707 0.83221 0.89022 1.21839 0.95303 1.01643 0.97538 1.21810 0.95584 1.01611 0.97924 1.21271 0.80635 1.00672 0.97761 1.46013 1.07136 1.58714 1.27638 1.20315 0.89516 0.77717 0.80748 1.90702 1.69916 1.40850 1.37799 1.23534 0.93610 1.05849 1.07451 1.85388 1.04626 1.69612 1.23790 1.22866 0.91518 1.41127 1.12860 0.90931 1.24998 0.99612 0.94547 0.94467 1.70014 1.35408 1.33745 1.11110 0.86164 0.82896 0.78728 0.77685 1.20269 1.20744 1.19696 1.45967 1.67879 1.13812 1.09721 1.17267 0.77063 0.86120 0.81935 1.90797 1.50217 1.15449 1.84779 1.21562 1.12054 0.94525 0.96050 1.22800 1.03726 1.00968 0.91080 1.24001 1.05303 0.83320 0.97853 1.83816 1.66037 1.36862 1.20081 1.24472 0.98067 0.96646 0.85626 0.92045 0.91282 0.92327 0.90779 0.89530 0.91007 0.91304 0.91710 0.91607 0.76864 0.89231 0.89261 0.92178 0.76817 0.82278 0.77386 0.77283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.49 37.16 0.35 -0.65 16 2 C 0.14 0.92 2.58 -67.93 -0.17 0.74 16 3 H 0.09 0.76 7.57 -51.93 -0.39 0.37 16 4 C -0.12 -0.67 4.75 -26.73 -0.13 -0.80 16 5 C -0.13 -0.89 5.22 -26.73 -0.14 -1.03 16 6 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 7 N -0.74 -9.46 5.56 -60.29 -0.33 -9.80 16 8 C 0.53 9.78 7.85 -10.99 -0.09 9.69 16 9 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 11 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 12 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 16 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 N -0.72 -4.46 4.52 -54.90 -0.25 -4.71 16 21 C 0.59 5.45 7.78 -12.54 -0.10 5.35 16 22 O -0.53 -7.05 16.64 5.27 0.09 -6.96 16 23 C -0.24 -1.86 6.31 -103.28 -0.65 -2.51 16 24 C -0.17 -1.23 11.01 -37.45 -0.41 -1.64 16 25 C -0.04 -0.21 12.03 29.30 0.35 0.14 16 26 O -0.17 -1.11 10.52 7.63 0.08 -1.03 16 27 C 0.02 0.12 11.61 30.08 0.35 0.47 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.40 1.41 7.57 -40.82 -0.31 1.10 16 42 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.21 0.36 8.06 -52.49 -0.42 -0.07 16 44 H 0.21 0.32 7.47 -52.49 -0.39 -0.08 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -38.61 395.72 -7.56 -46.18 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.46 Total: -0.32 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.24 Total: -4.82 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.15 Total: -39.90 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.26 Total: -19.59 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.61 -7.56 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756276524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.899 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds