Wall clock time and date at job start Wed Apr 1 2020 00:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47475 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00214 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99907 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00192 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47362 * 180.02562 * 10 8 7 12 12 C 1.76194 * 100.00211 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00066 * 0.02562 * 12 11 10 14 14 C 1.38801 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99983 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46644 * 90.00359 * 16 14 12 18 18 H 1.48495 * 109.47399 * 210.00043 * 16 14 12 19 19 H 1.48497 * 109.47082 * 330.00705 * 16 14 12 20 20 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 21 21 C 1.34777 * 119.99828 * 274.72131 * 20 2 1 22 22 O 1.21613 * 119.99962 * 0.28066 * 21 20 2 23 23 C 1.47381 * 120.00222 * 180.27565 * 21 20 2 24 24 C 1.47017 * 127.19386 * 180.02562 * 23 21 20 25 25 C 1.34180 * 105.95562 * 179.97438 * 24 23 21 26 26 O 1.34218 * 109.12148 * 359.97438 * 25 24 23 27 27 C 1.33658 * 110.91048 * 359.76514 * 26 25 24 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 32 32 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 33 33 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 34 34 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 35 35 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 36 36 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 37 37 H 0.97002 * 119.99926 * 359.97438 * 7 6 5 38 38 H 1.09006 * 109.46811 * 299.99911 * 10 8 7 39 39 H 1.08998 * 109.47055 * 60.00105 * 10 8 7 40 40 H 0.96995 * 120.00281 * 179.97438 * 15 14 12 41 41 H 0.97001 * 120.00384 * 95.00578 * 20 2 1 42 42 H 1.07997 * 127.02568 * 359.93912 * 24 23 21 43 43 H 1.07991 * 125.43914 * 179.97438 * 25 24 23 44 44 H 1.07989 * 125.80216 * 180.26754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2311 -2.6247 8 6 6.2078 -1.7964 -3.6464 9 8 5.6047 -2.3899 -4.5153 10 6 7.7097 -1.6900 -3.7099 11 16 8.3131 -2.5428 -5.1881 12 6 10.0447 -2.2673 -5.0149 13 1 10.4210 -1.7100 -4.1698 14 6 10.9253 -2.7675 -5.9640 15 7 10.4668 -3.4472 -6.9938 16 14 12.7612 -2.4749 -5.7808 17 1 13.3636 -3.5846 -4.9990 18 1 13.3900 -2.4180 -7.1248 19 1 12.9893 -1.1897 -5.0726 20 7 2.0183 -0.6906 1.1962 21 6 2.1523 -0.0169 2.3557 22 8 1.8630 1.1631 2.4103 23 6 2.6493 -0.7101 3.5576 24 6 2.8550 -0.1342 4.8946 25 6 3.3152 -1.1351 5.6605 26 8 3.4053 -2.2504 4.9192 27 6 3.0084 -2.0219 3.6636 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0727 -0.4260 35 1 3.7863 -2.3843 -2.5200 36 1 3.6401 -0.8741 -3.4508 37 1 6.0172 -0.7561 -1.9300 38 1 7.9980 -0.6397 -3.7537 39 1 8.1443 -2.1494 -2.8222 40 1 11.0822 -3.7964 -7.6572 41 1 2.2491 -1.6318 1.1526 42 1 2.6733 0.8862 5.1981 43 1 3.5721 -1.0560 6.7065 44 1 2.9793 -2.7512 2.8677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756276524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:45 Heat of formation + Delta-G solvation = -104.721962 kcal Electronic energy + Delta-G solvation = -25420.241672 eV Core-core repulsion = 21463.825011 eV Total energy + Delta-G solvation = -3956.416662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46207 -40.77118 -40.50914 -37.80769 -36.05012 -34.58423 -34.12478 -33.31272 -31.92076 -30.60723 -30.16077 -27.71334 -26.74420 -25.00550 -22.84360 -22.43643 -22.08368 -21.49438 -21.16747 -19.81025 -19.33718 -17.75008 -17.55317 -17.31279 -17.08633 -16.89224 -16.87048 -16.66971 -15.88815 -15.79271 -15.77551 -15.49080 -14.75193 -14.70135 -14.52366 -14.34507 -13.99711 -13.84963 -13.81191 -13.39116 -13.16515 -13.12975 -13.10433 -12.88415 -12.63765 -12.51623 -12.32424 -11.89732 -11.72916 -11.65444 -11.14163 -11.12866 -10.94215 -10.84960 -10.27638 -10.16133 -10.08036 -9.72408 -8.66472 -8.34579 -6.12551 0.37634 1.13397 1.27687 1.42601 1.47624 1.58139 1.62570 2.02173 2.21025 2.26618 2.32685 2.34181 2.99461 3.32471 3.59020 3.68121 3.78841 3.92649 4.01859 4.07581 4.13547 4.28105 4.31398 4.42619 4.51582 4.53006 4.57027 4.69163 4.74187 4.75674 4.84627 4.92574 5.01172 5.08394 5.19275 5.27032 5.32353 5.34894 5.42040 5.49315 5.54249 6.00544 6.19964 6.51859 6.54433 7.06752 7.21751 7.25993 8.74567 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.001775 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.443186 B =15774.394124 C =17291.218623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.119 3.881 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.567 6.567 10 C -0.131 4.131 11 S -0.152 6.152 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.259 1.259 20 N -0.706 5.706 21 C 0.586 3.414 22 O -0.586 6.586 23 C -0.271 4.271 24 C -0.200 4.200 25 C -0.026 4.026 26 O -0.180 6.180 27 C 0.044 3.956 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.413 0.587 42 H 0.152 0.848 43 H 0.243 0.757 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 4.600 25.983 32.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.004 4.004 7 N -0.368 5.368 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.076 5.924 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.183 1.183 20 N -0.358 5.358 21 C 0.375 3.625 22 O -0.468 6.468 23 C -0.276 4.276 24 C -0.220 4.220 25 C -0.092 4.092 26 O -0.075 6.075 27 C -0.027 4.027 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.169 0.831 43 H 0.259 0.741 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -20.066 4.099 24.533 31.958 hybrid contribution 1.855 0.969 0.903 2.279 sum -18.211 5.068 25.435 31.690 Atomic orbital electron populations 1.22138 0.94594 1.02971 1.02135 1.20967 0.94366 0.96893 0.83636 0.91156 1.21775 0.94064 1.02602 0.96981 1.21725 0.96498 1.01077 0.96426 1.21451 0.78654 1.01134 0.99168 1.45799 1.08297 1.56687 1.26065 1.20043 0.88837 0.77880 0.81438 1.90691 1.70440 1.43415 1.39973 1.23387 0.94986 1.05795 1.04054 1.85555 1.05833 1.71738 1.29314 1.23200 0.91700 1.41220 1.13302 0.89957 1.26133 1.05223 0.93978 0.93893 1.70177 1.37384 1.34965 1.12178 0.84952 0.75855 0.79250 0.77913 1.19231 1.20332 1.18279 1.45849 1.66735 1.14413 1.08821 1.17544 0.76418 0.85614 0.82910 1.90765 1.52746 1.17658 1.85622 1.21612 1.14281 0.95886 0.95815 1.22963 1.05653 1.01501 0.91866 1.24571 1.03474 0.82284 0.98832 1.83853 1.65932 1.37151 1.20515 1.25116 0.95439 0.96213 0.85898 0.94332 0.90383 0.90938 0.89030 0.89000 0.91134 0.90038 0.91751 0.92551 0.74841 0.87438 0.87168 0.91988 0.74965 0.83066 0.74127 0.73535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.49 71.98 0.68 -1.11 16 2 C 0.15 1.67 2.58 44.99 0.12 1.78 16 3 H 0.07 1.15 7.57 -2.39 -0.02 1.14 16 4 C -0.12 -0.94 4.75 30.59 0.15 -0.80 16 5 C -0.12 -1.30 5.22 30.59 0.16 -1.14 16 6 C 0.12 2.21 5.67 86.38 0.49 2.70 16 7 N -0.71 -16.59 5.56 -463.06 -2.57 -19.16 16 8 C 0.53 19.02 7.85 87.66 0.69 19.71 16 9 O -0.57 -25.69 15.86 -3.05 -0.05 -25.74 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.66 16 11 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 12 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 13 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 14 C 0.01 0.71 5.49 84.86 0.47 1.18 16 15 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 16 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 N -0.71 -7.58 4.52 -445.85 -2.02 -9.59 16 21 C 0.59 10.75 7.78 86.65 0.67 11.42 16 22 O -0.59 -16.22 16.64 -4.07 -0.07 -16.29 16 23 C -0.27 -4.05 6.31 -18.99 -0.12 -4.17 16 24 C -0.20 -2.94 11.01 23.65 0.26 -2.68 16 25 C -0.03 -0.24 12.03 66.89 0.80 0.56 16 26 O -0.18 -1.86 10.52 4.39 0.05 -1.81 16 27 C 0.04 0.36 11.61 67.39 0.78 1.15 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.72 7.75 -2.39 -0.02 0.70 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.41 6.95 8.47 -92.71 -0.79 6.17 16 38 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.41 1.69 7.57 -92.71 -0.70 0.99 16 42 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.24 0.23 8.06 -2.92 -0.02 0.21 16 44 H 0.25 -0.26 7.47 -2.92 -0.02 -0.28 16 Total: -1.00 -88.24 395.72 2.27 -85.97 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -0.46 Total: 12.67 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.23 Total: -6.47 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -4.30 Total: -84.21 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.07 Total: -43.84 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -88.24 2.27 -85.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756276524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.752 kcal (2) G-P(sol) polarization free energy of solvation -88.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds