Wall clock time and date at job start Tue Mar 31 2020 22:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 C 1.38267 * 119.97194 * 269.71960 * 19 18 17 21 21 C 1.38293 * 120.03659 * 179.78710 * 20 19 18 22 22 C 1.37969 * 119.92175 * 0.47159 * 21 20 19 23 23 C 1.38604 * 120.03610 * 359.78075 * 22 21 20 24 24 C 1.37970 * 120.04081 * 359.97438 * 23 22 21 25 25 C 1.51082 * 107.27288 * 179.97438 * 23 22 21 26 26 O 1.43944 * 105.95510 * 17.68993 * 25 23 22 27 27 C 1.43947 * 104.95085 * 331.55341 * 26 25 23 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.07999 * 119.98215 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.04245 * 180.25186 * 21 20 19 40 40 H 1.07997 * 120.03935 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.15528 * 136.81099 * 25 23 22 42 42 H 1.09003 * 110.15254 * 258.56843 * 25 23 22 43 43 H 1.08996 * 110.15248 * 147.56830 * 27 26 25 44 44 H 1.08998 * 110.15372 * 269.25234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 6 7.4030 -1.2308 -2.8803 21 6 8.7785 -1.1242 -2.7840 22 6 9.3840 -1.1295 -1.5443 23 6 8.6143 -1.2368 -0.3966 24 6 7.2417 -1.3381 -0.4926 25 6 9.5599 -1.2139 0.7815 26 8 10.7988 -0.6758 0.2840 27 6 10.8278 -1.0370 -1.1091 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.9284 -1.2314 -3.8504 39 1 9.3783 -1.0406 -3.6782 40 1 6.6419 -1.4213 0.4017 41 1 9.1623 -0.5746 1.5697 42 1 9.7141 -2.2248 1.1589 43 1 11.3454 -0.2700 -1.6852 44 1 11.3222 -1.9999 -1.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337740887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:43 Heat of formation + Delta-G solvation = -85.808083 kcal Electronic energy + Delta-G solvation = -27969.400546 eV Core-core repulsion = 24013.804052 eV Total energy + Delta-G solvation = -3955.596494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87808 -38.05482 -36.70816 -36.17747 -35.28353 -34.96558 -32.63462 -31.73457 -31.33198 -29.11379 -28.27337 -26.20228 -25.51656 -25.21182 -23.94434 -21.92977 -21.02659 -20.77864 -18.90304 -17.35356 -16.96270 -16.78243 -16.59321 -16.40903 -16.27719 -15.89578 -15.38344 -14.89953 -14.51109 -14.33033 -13.93700 -13.49811 -13.36440 -13.25020 -13.22915 -12.90200 -12.75955 -12.72721 -12.09576 -12.04045 -11.88775 -11.81850 -11.57344 -11.39955 -11.28230 -11.23959 -11.03737 -10.98111 -10.90552 -10.47215 -10.30594 -10.24662 -10.10990 -9.43076 -9.18322 -9.06265 -8.72496 -8.51411 -8.00148 -6.12640 -4.21507 0.86542 1.12689 1.31459 3.21731 3.27157 3.28720 3.31456 3.63303 3.67121 3.94710 4.12850 4.31674 4.36873 4.58438 4.74352 4.95897 5.02728 5.06785 5.15481 5.17861 5.21855 5.29095 5.33490 5.42553 5.50355 5.58609 5.73846 5.87285 5.96991 6.07566 6.12003 6.13302 6.30674 6.38912 6.46290 6.62948 6.70919 6.85147 6.85434 7.08744 7.19276 7.49230 7.58995 7.75421 8.01891 8.22527 8.80798 9.44710 10.92358 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.003963 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.264773 B = 7064.265036 C = 9063.941453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.990 5.990 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.980 6.980 17 N -1.124 6.124 18 C 0.163 3.837 19 C -0.085 4.085 20 C -0.097 4.097 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.073 4.073 25 C 0.090 3.910 26 O -0.362 6.362 27 C 0.091 3.909 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 -6.759 -7.552 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.042 4.042 14 S 2.791 3.209 15 O -0.982 6.982 16 O -0.964 6.964 17 N -0.883 5.883 18 C 0.037 3.963 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.091 4.091 25 C 0.014 3.986 26 O -0.281 6.281 27 C 0.015 3.985 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.283 -6.183 -8.118 17.553 hybrid contribution 0.476 -0.507 1.305 1.479 sum 14.758 -6.690 -6.813 17.578 Atomic orbital electron populations 1.22056 0.97968 0.99656 1.00763 1.18721 0.91873 0.92747 0.80109 0.92358 1.21319 1.32023 1.13121 0.90163 0.91986 1.24925 0.94952 0.94957 0.98967 1.69870 1.36064 1.22510 1.23942 0.86598 0.79085 0.79674 0.82211 1.21248 1.20276 1.20322 1.57709 1.64360 1.21380 1.39809 1.21216 0.99037 0.82050 1.01856 1.01807 0.72544 0.73163 0.73345 1.93536 1.86014 1.76407 1.42245 1.93599 1.83514 1.32436 1.86841 1.56110 1.32198 1.14460 1.85520 1.20095 0.88921 0.84449 1.02856 1.19865 0.95314 1.00597 0.92916 1.21134 0.93163 0.98656 0.98614 1.20350 0.94448 1.00699 0.95949 1.21065 0.96247 1.01665 0.94356 1.21005 0.94526 1.01957 0.95945 1.20440 0.92507 0.98222 0.97971 1.21772 0.82291 0.99908 0.94626 1.89086 1.38519 1.78044 1.22442 1.21732 0.92650 1.01268 0.82834 0.96889 0.94871 0.88924 0.92552 0.93808 0.93284 0.90142 0.75293 0.90385 0.89820 0.85015 0.85623 0.84828 0.88202 0.90424 0.88606 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.97 37.16 0.33 -3.06 16 2 C 0.27 6.38 2.62 -69.09 -0.18 6.20 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -13.04 7.99 -34.44 -0.28 -13.31 16 5 H 0.06 1.47 7.33 -52.49 -0.38 1.08 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.94 11.32 55.43 0.63 -23.31 16 8 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.99 -19.72 3.12 -115.85 -0.36 -20.08 16 13 C 0.10 1.77 9.28 59.85 0.56 2.33 16 14 S 2.78 52.73 6.09 -107.50 -0.66 52.08 16 15 O -1.00 -19.65 16.68 -57.17 -0.95 -20.61 16 16 O -0.98 -22.02 16.70 -57.17 -0.95 -22.98 16 17 N -1.12 -17.17 6.05 -11.65 -0.07 -17.24 16 18 C 0.16 2.10 6.37 -5.19 -0.03 2.07 16 19 C -0.09 -1.01 5.28 -104.59 -0.55 -1.57 16 20 C -0.10 -1.03 9.70 -39.55 -0.38 -1.41 16 21 C -0.10 -0.94 10.04 -39.66 -0.40 -1.34 16 22 C -0.13 -1.39 6.32 -104.40 -0.66 -2.05 16 23 C -0.13 -1.52 6.32 -104.40 -0.66 -2.18 16 24 C -0.07 -0.87 9.70 -39.66 -0.38 -1.25 16 25 C 0.09 0.92 7.63 36.19 0.28 1.20 16 26 O -0.36 -4.11 11.72 -35.23 -0.41 -4.53 16 27 C 0.09 0.83 7.63 36.19 0.28 1.10 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.70 7.79 -51.92 -0.40 0.29 16 34 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 35 H 0.41 5.96 8.64 -34.47 -0.30 5.66 16 36 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -31.52 374.26 -10.63 -42.15 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.28 Total: 5.75 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.18 Total: -11.71 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.20 Total: -60.63 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.32 Total: -48.11 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.66 Total: 52.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.52 -10.63 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.658 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds