Wall clock time and date at job start Tue Mar 31 2020 23:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.46648 * 240.00015 * 3 2 1 5 5 H 1.48499 * 109.46756 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46899 * 120.00127 * 3 2 1 7 7 C 1.38814 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99229 * 197.36170 * 7 2 1 9 9 N 1.36933 * 120.00220 * 17.36027 * 7 2 1 10 10 C 1.46924 * 120.62967 * 207.66711 * 9 7 2 11 11 C 1.53187 * 108.77719 * 233.62824 * 10 9 7 12 12 C 1.53041 * 109.31221 * 305.36920 * 11 10 9 13 13 H 1.09002 * 109.44495 * 301.34740 * 12 11 10 14 14 N 1.46500 * 109.45911 * 181.38655 * 12 11 10 15 15 C 1.34773 * 120.00738 * 84.92842 * 14 12 11 16 16 O 1.21284 * 119.99346 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00394 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47136 * 180.02562 * 17 15 14 19 19 O 1.42898 * 109.47504 * 180.02562 * 18 17 15 20 20 C 1.42892 * 114.00527 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47512 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46995 * 60.00197 * 21 20 19 23 23 F 1.39899 * 109.47454 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47617 * 300.00600 * 21 20 19 25 25 C 1.53037 * 109.54203 * 61.36169 * 12 11 10 26 26 H 1.09003 * 109.49665 * 178.68816 * 25 12 11 27 27 O 1.42898 * 109.49831 * 58.58387 * 25 12 11 28 28 C 1.46921 * 120.62899 * 27.68404 * 9 7 2 29 29 H 0.97000 * 120.00259 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58718 * 353.41736 * 10 9 7 31 31 H 1.09001 * 109.58695 * 113.69917 * 10 9 7 32 32 H 1.09002 * 109.50522 * 185.41163 * 11 10 9 33 33 H 1.09011 * 109.49785 * 65.31363 * 11 10 9 34 34 H 0.97002 * 119.99530 * 264.92060 * 14 12 11 35 35 H 1.08996 * 109.46977 * 60.00196 * 17 15 14 36 36 H 1.09006 * 109.46752 * 299.99863 * 17 15 14 37 37 H 1.09001 * 109.47672 * 59.99549 * 18 17 15 38 38 H 1.09012 * 109.46860 * 299.99894 * 18 17 15 39 39 H 1.08999 * 109.47222 * 299.99586 * 20 19 18 40 40 H 1.09008 * 109.47069 * 59.99451 * 20 19 18 41 41 H 0.96698 * 113.99900 * 179.97438 * 27 25 12 42 42 H 1.08999 * 109.58932 * 6.58770 * 28 9 7 43 43 H 1.09001 * 109.58876 * 246.15675 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1785 11 6 2.0753 -4.6090 -0.9924 12 6 0.8198 -4.6884 -1.8640 13 1 -0.0192 -5.0356 -1.2610 14 7 1.0495 -5.6256 -2.9663 15 6 0.8496 -6.9455 -2.7815 16 8 0.4790 -7.3574 -1.7026 17 6 1.0853 -7.9095 -3.9157 18 6 0.7871 -9.3342 -3.4444 19 8 1.0111 -10.2484 -4.5196 20 6 0.7606 -11.6143 -4.1830 21 6 1.0307 -12.4979 -5.4025 22 9 2.3649 -12.3522 -5.7976 23 9 0.7860 -13.8353 -5.0728 24 9 0.1891 -12.1143 -6.4521 25 6 0.5016 -3.3029 -2.4306 26 1 -0.3791 -3.3648 -3.0699 27 8 1.6141 -2.8328 -3.1943 28 6 0.2281 -2.3339 -1.2759 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5177 0.7458 31 1 1.0483 -4.0686 0.8280 32 1 2.3148 -5.6005 -0.6082 33 1 2.9092 -4.2381 -1.5886 34 1 1.3454 -5.2961 -3.8293 35 1 2.1241 -7.8433 -4.2388 36 1 0.4288 -7.6578 -4.7487 37 1 -0.2519 -9.4002 -3.1214 38 1 1.4432 -9.5861 -2.6111 39 1 1.4161 -11.9131 -3.3651 40 1 -0.2791 -11.7279 -3.8755 41 1 1.4817 -1.9580 -3.5846 42 1 0.0985 -1.3252 -1.6683 43 1 -0.6741 -2.6412 -0.7470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099903983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:44 Heat of formation + Delta-G solvation = -266.614759 kcal Electronic energy + Delta-G solvation = -29769.381639 eV Core-core repulsion = 24821.335167 eV Total energy + Delta-G solvation = -4948.046472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.49100 -48.05414 -47.94138 -40.00827 -38.65520 -37.89601 -34.83655 -34.38654 -32.65898 -31.94188 -29.94075 -29.22751 -28.97536 -25.41467 -23.92234 -23.67584 -22.38315 -21.73747 -20.19340 -19.40667 -19.05075 -19.02830 -18.18062 -17.48672 -17.18126 -16.72441 -16.20182 -16.01787 -15.50436 -15.26473 -14.95956 -14.86220 -14.72968 -14.40932 -14.27557 -14.12513 -14.11867 -13.97707 -13.88740 -13.59598 -13.54855 -13.17836 -12.76854 -12.24349 -12.11218 -12.05103 -11.83853 -11.75444 -11.29552 -11.19151 -10.82325 -10.63528 -10.51651 -10.32651 -10.24417 -10.10236 -9.88511 -9.66470 -9.22988 -8.77293 -8.53180 -6.72607 -5.85141 -3.25690 1.98495 2.64952 2.74302 3.30450 3.35058 3.40839 3.42497 3.48839 3.55402 4.06872 4.44850 4.46827 4.53772 4.55943 4.70000 4.76487 4.93901 5.15966 5.26980 5.35956 5.40478 5.41901 5.46338 5.53695 5.89889 5.99037 6.16557 6.22009 6.34859 6.40882 6.50201 6.74772 6.78984 6.93418 7.12374 7.38482 7.63642 7.74530 8.19016 8.28831 8.39017 9.14162 9.77283 10.33921 11.23698 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.039391 B = 0.001768 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.653768 B =15837.146114 C =15951.735698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.162 3.838 13 H 0.090 0.910 14 N -0.715 5.715 15 C 0.514 3.486 16 O -0.548 6.548 17 C -0.141 4.141 18 C 0.080 3.920 19 O -0.377 6.377 20 C 0.020 3.980 21 C 0.462 3.538 22 F -0.176 7.176 23 F -0.178 7.178 24 F -0.176 7.176 25 C 0.073 3.927 26 H 0.044 0.956 27 O -0.560 6.560 28 C 0.145 3.855 29 H 0.254 0.746 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.404 0.596 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.376 0.624 42 H 0.096 0.904 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -21.106 -11.574 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.058 3.942 13 H 0.108 0.892 14 N -0.365 5.365 15 C 0.300 3.700 16 O -0.426 6.426 17 C -0.181 4.181 18 C 0.004 3.996 19 O -0.296 6.296 20 C -0.058 4.058 21 C 0.407 3.593 22 F -0.157 7.157 23 F -0.159 7.159 24 F -0.157 7.157 25 C 0.011 3.989 26 H 0.061 0.939 27 O -0.365 6.365 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.238 0.762 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.222 0.778 42 H 0.114 0.886 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.022 -21.759 -10.790 24.287 hybrid contribution 0.231 1.361 -0.562 1.490 sum 0.253 -20.398 -11.352 23.346 Atomic orbital electron populations 1.70008 1.05211 1.25656 1.54372 1.25023 0.95301 0.98413 1.01186 0.86344 0.78865 0.83229 0.78200 1.21041 1.21730 1.20906 1.19136 0.92708 0.84749 1.40717 0.91698 1.43868 1.35427 1.01589 1.49596 1.20892 0.97911 0.86437 0.92682 1.22299 0.97553 0.99292 0.98461 1.21034 0.99310 0.86505 0.87329 0.89159 1.46195 1.68026 1.06089 1.16188 1.20252 0.77457 0.83286 0.89036 1.90718 1.46926 1.77955 1.27032 1.21471 1.05409 0.92602 0.98602 1.22286 1.01794 0.87373 0.88142 1.87820 1.89987 1.13697 1.38142 1.23481 1.04753 0.83954 0.93635 1.20200 0.74665 0.79236 0.85176 1.93224 1.34958 1.95475 1.92067 1.93213 1.94184 1.35978 1.92530 1.93221 1.71218 1.90813 1.60483 1.22841 0.87679 0.93983 0.94368 0.93867 1.86340 1.41869 1.38260 1.70061 1.21447 0.89663 0.98523 0.88579 0.93567 0.92441 0.96249 0.92925 0.91169 0.76199 0.87814 0.87894 0.91461 0.91443 0.88381 0.88405 0.77752 0.88577 0.95455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.29 11.19 55.49 0.62 -24.67 16 2 C 0.00 -0.04 4.91 -17.43 -0.09 -0.12 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.47 9.58 -15.06 -0.14 -6.61 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.58 -14.03 2.94 -172.32 -0.51 -14.54 16 10 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 11 C -0.14 -2.47 5.51 -26.61 -0.15 -2.62 16 12 C 0.16 2.72 2.20 -67.89 -0.15 2.57 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 14 N -0.71 -9.60 5.05 -53.77 -0.27 -9.87 16 15 C 0.51 6.70 7.79 -10.99 -0.09 6.61 16 16 O -0.55 -9.09 15.64 5.55 0.09 -9.00 16 17 C -0.14 -1.28 6.07 -27.89 -0.17 -1.45 16 18 C 0.08 0.71 5.23 37.16 0.19 0.90 16 19 O -0.38 -3.31 10.23 -35.23 -0.36 -3.67 16 20 C 0.02 0.13 5.90 37.16 0.22 0.35 16 21 C 0.46 3.57 3.32 37.16 0.12 3.69 16 22 F -0.18 -1.62 17.26 2.25 0.04 -1.58 16 23 F -0.18 -1.33 17.32 2.25 0.04 -1.30 16 24 F -0.18 -1.61 17.26 2.25 0.04 -1.57 16 25 C 0.07 1.26 3.38 -26.61 -0.09 1.17 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 O -0.56 -9.44 12.09 -35.23 -0.43 -9.87 16 28 C 0.15 3.21 4.95 -3.71 -0.02 3.19 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.35 7.61 -51.92 -0.40 0.95 16 34 H 0.40 4.66 8.26 -40.82 -0.34 4.33 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.38 5.51 9.08 45.56 0.41 5.93 16 42 H 0.10 2.34 6.03 -51.93 -0.31 2.02 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -31.41 369.27 -5.79 -37.20 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.21 Total: 6.47 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.38 Total: 10.78 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.16 Total: -49.08 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.70 Total: -22.54 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.12 Total: -4.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.41 -5.79 -37.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099903983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.415 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds