Wall clock time and date at job start Tue Mar 31 2020 23:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.46648 * 240.00015 * 3 2 1 5 5 H 1.48499 * 109.46756 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46899 * 120.00127 * 3 2 1 7 7 C 1.38814 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99229 * 197.36170 * 7 2 1 9 9 N 1.36933 * 120.00220 * 17.36027 * 7 2 1 10 10 C 1.46924 * 120.62967 * 207.66711 * 9 7 2 11 11 C 1.53187 * 108.77719 * 233.62824 * 10 9 7 12 12 C 1.53041 * 109.31221 * 305.36920 * 11 10 9 13 13 H 1.09002 * 109.44495 * 301.34740 * 12 11 10 14 14 N 1.46500 * 109.45911 * 181.38655 * 12 11 10 15 15 C 1.34773 * 120.00738 * 84.92842 * 14 12 11 16 16 O 1.21284 * 119.99346 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00394 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47136 * 180.02562 * 17 15 14 19 19 O 1.42898 * 109.47504 * 180.02562 * 18 17 15 20 20 C 1.42892 * 114.00527 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47512 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46995 * 60.00197 * 21 20 19 23 23 F 1.39899 * 109.47454 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47617 * 300.00600 * 21 20 19 25 25 C 1.53037 * 109.54203 * 61.36169 * 12 11 10 26 26 H 1.09003 * 109.49665 * 178.68816 * 25 12 11 27 27 O 1.42898 * 109.49831 * 58.58387 * 25 12 11 28 28 C 1.46921 * 120.62899 * 27.68404 * 9 7 2 29 29 H 0.97000 * 120.00259 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58718 * 353.41736 * 10 9 7 31 31 H 1.09001 * 109.58695 * 113.69917 * 10 9 7 32 32 H 1.09002 * 109.50522 * 185.41163 * 11 10 9 33 33 H 1.09011 * 109.49785 * 65.31363 * 11 10 9 34 34 H 0.97002 * 119.99530 * 264.92060 * 14 12 11 35 35 H 1.08996 * 109.46977 * 60.00196 * 17 15 14 36 36 H 1.09006 * 109.46752 * 299.99863 * 17 15 14 37 37 H 1.09001 * 109.47672 * 59.99549 * 18 17 15 38 38 H 1.09012 * 109.46860 * 299.99894 * 18 17 15 39 39 H 1.08999 * 109.47222 * 299.99586 * 20 19 18 40 40 H 1.09008 * 109.47069 * 59.99451 * 20 19 18 41 41 H 0.96698 * 113.99900 * 179.97438 * 27 25 12 42 42 H 1.08999 * 109.58932 * 6.58770 * 28 9 7 43 43 H 1.09001 * 109.58876 * 246.15675 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1785 11 6 2.0753 -4.6090 -0.9924 12 6 0.8198 -4.6884 -1.8640 13 1 -0.0192 -5.0356 -1.2610 14 7 1.0495 -5.6256 -2.9663 15 6 0.8496 -6.9455 -2.7815 16 8 0.4790 -7.3574 -1.7026 17 6 1.0853 -7.9095 -3.9157 18 6 0.7871 -9.3342 -3.4444 19 8 1.0111 -10.2484 -4.5196 20 6 0.7606 -11.6143 -4.1830 21 6 1.0307 -12.4979 -5.4025 22 9 2.3649 -12.3522 -5.7976 23 9 0.7860 -13.8353 -5.0728 24 9 0.1891 -12.1143 -6.4521 25 6 0.5016 -3.3029 -2.4306 26 1 -0.3791 -3.3648 -3.0699 27 8 1.6141 -2.8328 -3.1943 28 6 0.2281 -2.3339 -1.2759 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5177 0.7458 31 1 1.0483 -4.0686 0.8280 32 1 2.3148 -5.6005 -0.6082 33 1 2.9092 -4.2381 -1.5886 34 1 1.3454 -5.2961 -3.8293 35 1 2.1241 -7.8433 -4.2388 36 1 0.4288 -7.6578 -4.7487 37 1 -0.2519 -9.4002 -3.1214 38 1 1.4432 -9.5861 -2.6111 39 1 1.4161 -11.9131 -3.3651 40 1 -0.2791 -11.7279 -3.8755 41 1 1.4817 -1.9580 -3.5846 42 1 0.0985 -1.3252 -1.6683 43 1 -0.6741 -2.6412 -0.7470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099903983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:44 Heat of formation + Delta-G solvation = -290.255138 kcal Electronic energy + Delta-G solvation = -29770.406763 eV Core-core repulsion = 24821.335167 eV Total energy + Delta-G solvation = -4949.071595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.11154 -48.66480 -48.59714 -41.15561 -39.65939 -38.97794 -36.47772 -35.70646 -33.98068 -33.14127 -31.20668 -30.72844 -30.05982 -27.07683 -25.01147 -24.26630 -23.92082 -23.27996 -21.31940 -20.87840 -19.67204 -19.64365 -19.16741 -18.77883 -18.15769 -17.53786 -17.37447 -17.08308 -16.84815 -16.73596 -16.08985 -15.67108 -15.50463 -15.44976 -15.38784 -15.18964 -15.04736 -14.91381 -14.78653 -14.76204 -14.75864 -14.44024 -14.05531 -13.73597 -13.63078 -13.13701 -12.81044 -12.70605 -12.62002 -12.50131 -12.38460 -12.37531 -12.22584 -12.01600 -11.83048 -11.43824 -10.94411 -10.91037 -10.71401 -10.57113 -9.99524 -8.67382 -7.87246 -5.30886 1.39184 1.49677 1.50807 1.58145 1.63027 2.00602 2.49636 2.52457 2.85253 3.00284 3.25375 3.40757 3.45284 3.64465 3.73627 3.89273 4.01204 4.05186 4.11681 4.13210 4.18998 4.36683 4.41513 4.50195 4.61406 4.73315 4.79383 4.82485 4.90664 4.97349 5.08320 5.19318 5.44874 5.52357 5.57401 5.65682 5.75992 6.37533 6.59822 6.92452 7.15364 7.26169 7.83609 8.36106 9.18921 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.039391 B = 0.001768 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.653768 B =15837.146114 C =15951.735698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.598 5.598 10 C 0.143 3.857 11 C -0.119 4.119 12 C 0.169 3.831 13 H 0.074 0.926 14 N -0.707 5.707 15 C 0.515 3.485 16 O -0.585 6.585 17 C -0.131 4.131 18 C 0.083 3.917 19 O -0.390 6.390 20 C 0.018 3.982 21 C 0.461 3.539 22 F -0.186 7.186 23 F -0.177 7.177 24 F -0.186 7.186 25 C 0.090 3.910 26 H 0.070 0.930 27 O -0.561 6.561 28 C 0.149 3.851 29 H 0.251 0.749 30 H 0.054 0.946 31 H 0.011 0.989 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.416 0.584 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.386 0.614 42 H 0.072 0.928 43 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -21.985 -13.007 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.017 3.983 11 C -0.159 4.159 12 C 0.063 3.937 13 H 0.092 0.908 14 N -0.358 5.358 15 C 0.303 3.697 16 O -0.465 6.465 17 C -0.170 4.170 18 C 0.006 3.994 19 O -0.309 6.309 20 C -0.060 4.060 21 C 0.407 3.593 22 F -0.168 7.168 23 F -0.158 7.158 24 F -0.168 7.168 25 C 0.029 3.971 26 H 0.088 0.912 27 O -0.368 6.368 28 C 0.022 3.978 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 0.715 -22.662 -12.266 25.778 hybrid contribution 0.016 1.560 -0.080 1.562 sum 0.731 -21.102 -12.346 24.459 Atomic orbital electron populations 1.70156 1.06449 1.25957 1.55607 1.25701 0.96004 1.01181 1.01428 0.85352 0.77519 0.79331 0.78263 1.20170 1.22132 1.20767 1.19379 0.92751 0.85925 1.40364 0.92106 1.44096 1.35682 1.01884 1.50469 1.20981 0.97360 0.86053 0.93885 1.22065 0.97996 0.98509 0.97335 1.20680 0.97917 0.87005 0.88050 0.90755 1.45980 1.68143 1.05938 1.15709 1.20900 0.76070 0.83257 0.89493 1.90710 1.48462 1.78448 1.28925 1.21419 1.06938 0.91510 0.97175 1.22207 1.01724 0.87359 0.88063 1.87773 1.90213 1.14699 1.38262 1.23680 1.06582 0.82555 0.93188 1.20428 0.74001 0.79526 0.85354 1.93202 1.35799 1.95545 1.92255 1.93213 1.94124 1.36016 1.92468 1.93200 1.71468 1.90919 1.61171 1.22511 0.88900 0.92861 0.92831 0.91249 1.86315 1.41656 1.39122 1.69660 1.21341 0.88309 0.98538 0.89625 0.94014 0.92717 0.97076 0.92206 0.91731 0.74707 0.86103 0.85829 0.91547 0.91721 0.86425 0.86360 0.76514 0.90969 0.97829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.07 11.19 21.65 0.24 -52.83 16 2 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 3 Si 0.97 43.52 29.59 68.60 2.03 45.55 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -13.61 9.58 84.03 0.81 -12.80 16 8 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 9 N -0.60 -29.16 2.94 -699.10 -2.05 -31.22 16 10 C 0.14 6.11 6.52 86.36 0.56 6.67 16 11 C -0.12 -4.23 5.51 30.67 0.17 -4.06 16 12 C 0.17 5.46 2.20 45.02 0.10 5.56 16 13 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 14 N -0.71 -17.31 5.05 -442.41 -2.23 -19.54 16 15 C 0.51 12.28 7.79 87.66 0.68 12.97 16 16 O -0.58 -18.64 15.64 -3.04 -0.05 -18.69 16 17 C -0.13 -1.98 6.07 29.85 0.18 -1.79 16 18 C 0.08 1.26 5.23 71.98 0.38 1.64 16 19 O -0.39 -5.88 10.23 -148.98 -1.52 -7.40 16 20 C 0.02 0.18 5.90 71.98 0.42 0.61 16 21 C 0.46 6.41 3.32 71.98 0.24 6.65 16 22 F -0.19 -3.21 17.26 44.97 0.78 -2.43 16 23 F -0.18 -2.40 17.32 44.97 0.78 -1.63 16 24 F -0.19 -3.17 17.26 44.97 0.78 -2.39 16 25 C 0.09 3.02 3.38 30.67 0.10 3.12 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 O -0.56 -17.82 12.09 -148.98 -1.80 -19.62 16 28 C 0.15 6.65 4.95 86.37 0.43 7.08 16 29 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.39 7.61 -2.38 -0.02 2.37 16 34 H 0.42 8.29 8.26 -92.71 -0.77 7.52 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.39 10.64 9.08 -74.06 -0.67 9.97 16 42 H 0.07 3.57 6.03 -2.39 -0.01 3.56 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -67.82 369.27 1.06 -66.77 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.37 Total: 19.95 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 4.49 Total: 23.49 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -4.04 Total: -103.59 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -3.37 Total: -45.71 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 2.33 Total: -6.45 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.82 1.06 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099903983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.488 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds