Wall clock time and date at job start Tue Mar 31 2020 22:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00477 * 2 1 4 4 H 1.48503 * 109.47147 * 239.99754 * 3 2 1 5 5 H 1.48495 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99831 * 3 2 1 7 7 C 1.38816 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00185 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47112 * 60.00227 * 11 10 9 13 13 C 1.55324 * 109.39902 * 180.02562 * 11 10 9 14 14 N 1.45126 * 109.25389 * 187.88722 * 13 11 10 15 15 C 1.34774 * 118.75938 * 90.85219 * 14 13 11 16 16 O 1.21569 * 120.00262 * 172.74100 * 15 14 13 17 17 C 1.47698 * 119.99953 * 353.01778 * 15 14 13 18 18 C 1.39649 * 120.15788 * 291.58119 * 17 15 14 19 19 C 1.38069 * 119.85659 * 179.97438 * 18 17 15 20 20 F 1.35095 * 119.92081 * 179.97438 * 19 18 17 21 21 C 1.38659 * 120.16031 * 0.02730 * 19 18 17 22 22 C 1.38180 * 120.31705 * 359.97359 * 21 19 18 23 23 C 1.38318 * 120.14571 * 359.73974 * 22 21 19 24 24 F 1.35101 * 120.08333 * 180.27685 * 23 22 21 25 25 C 1.47514 * 122.48145 * 270.57570 * 14 13 11 26 26 C 1.53566 * 111.03209 * 41.88497 * 25 14 13 27 27 C 1.51535 * 109.58157 * 39.97482 * 26 25 14 28 28 O 1.38012 * 109.47054 * 300.00399 * 11 10 9 29 29 H 0.97006 * 119.99357 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00155 * 0.02562 * 9 7 2 31 31 H 1.09008 * 109.46774 * 60.00266 * 10 9 7 32 32 H 1.08996 * 109.47328 * 300.00505 * 10 9 7 33 33 H 1.09004 * 109.50938 * 68.01462 * 13 11 10 34 34 H 1.08997 * 109.70045 * 307.87500 * 13 11 10 35 35 H 1.08007 * 120.07579 * 359.95608 * 18 17 15 36 36 H 1.07999 * 119.83967 * 179.97438 * 21 19 18 37 37 H 1.07998 * 119.92666 * 180.02562 * 22 21 19 38 38 H 1.09006 * 109.16666 * 162.28269 * 25 14 13 39 39 H 1.09001 * 109.16575 * 281.53586 * 25 14 13 40 40 H 1.08999 * 109.45906 * 160.01200 * 26 25 14 41 41 H 1.09002 * 109.45345 * 279.94271 * 26 25 14 42 42 H 1.08996 * 109.59247 * 28.38209 * 27 26 25 43 43 H 1.09006 * 109.59275 * 148.67550 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0634 -4.8198 0.0012 12 1 0.4364 -4.7622 -0.8885 13 6 1.8416 -6.1640 0.0018 14 7 0.9068 -7.2582 -0.1856 15 6 0.6426 -7.6779 -1.4387 16 8 -0.0312 -8.6740 -1.6168 17 6 1.1770 -6.9313 -2.5957 18 6 0.6983 -5.6521 -2.8868 19 6 1.2026 -4.9595 -3.9696 20 9 0.7401 -3.7222 -4.2528 21 6 2.1818 -5.5313 -4.7677 22 6 2.6603 -6.7966 -4.4859 23 6 2.1685 -7.4996 -3.4009 24 9 2.6413 -8.7343 -3.1233 25 6 0.2394 -7.9322 0.9442 26 6 -0.2245 -6.9148 1.9968 27 6 -0.7811 -5.6866 1.3053 28 8 0.2703 -4.7462 1.1283 29 1 -0.4849 0.8402 -0.0004 30 1 0.3553 -2.3881 -0.0002 31 1 2.6844 -3.7147 0.8906 32 1 2.6845 -3.7147 -0.8894 33 1 2.3569 -6.2858 0.9546 34 1 2.5708 -6.1668 -0.8082 35 1 -0.0649 -5.2056 -2.2666 36 1 2.5723 -4.9850 -5.6135 37 1 3.4234 -7.2357 -5.1114 38 1 -0.6253 -8.4821 0.5725 39 1 0.9364 -8.6314 1.4061 40 1 -0.9990 -7.3634 2.6188 41 1 0.6212 -6.6277 2.6216 42 1 -1.1881 -5.9670 0.3338 43 1 -1.5681 -5.2471 1.9182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200696633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:45 Heat of formation + Delta-G solvation = -129.124822 kcal Electronic energy + Delta-G solvation = -31153.579182 eV Core-core repulsion = 26642.263947 eV Total energy + Delta-G solvation = -4511.315236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.15522 -50.01509 -42.03702 -40.05299 -39.29366 -36.77204 -36.34636 -34.65490 -33.05176 -32.36783 -31.24387 -30.21606 -27.94998 -26.90777 -25.42041 -24.63709 -23.94896 -22.69982 -22.27281 -20.75069 -19.21663 -19.19668 -18.80753 -18.43050 -18.21364 -17.67552 -17.40409 -16.93960 -16.85167 -16.59562 -16.47131 -16.01056 -15.86433 -15.49573 -15.19809 -15.07845 -14.88827 -14.76614 -14.65020 -14.18380 -13.94116 -13.76887 -13.67213 -13.38095 -13.24137 -13.05669 -12.81677 -12.70721 -12.62372 -12.34391 -12.15439 -11.93706 -11.78961 -11.45853 -11.28525 -10.91983 -10.63398 -10.37816 -9.82610 -9.76093 -8.95112 -7.89256 -5.17765 -0.45755 -0.20587 1.14594 1.49896 1.53183 1.58960 1.64748 2.14947 2.59391 2.67505 2.87304 2.90711 3.16665 3.43975 3.45428 3.56260 3.72442 3.78436 3.88063 3.90112 4.01671 4.08663 4.20624 4.28971 4.37703 4.42370 4.48235 4.61122 4.64895 4.70341 4.77102 4.78679 4.80879 4.87921 4.91531 5.03380 5.09612 5.18074 5.30606 5.52672 5.54673 5.96445 6.30949 6.68377 6.73729 7.38430 8.13494 8.37217 9.34242 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.004444 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.649119 B = 6299.234497 C = 8106.338757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.736 5.736 10 C 0.164 3.836 11 C 0.085 3.915 12 H 0.048 0.952 13 C 0.083 3.917 14 N -0.594 5.594 15 C 0.560 3.440 16 O -0.556 6.556 17 C -0.144 4.144 18 C -0.105 4.105 19 C 0.084 3.916 20 F -0.140 7.140 21 C -0.091 4.091 22 C -0.104 4.104 23 C 0.115 3.885 24 F -0.132 7.132 25 C 0.108 3.892 26 C -0.152 4.152 27 C 0.067 3.933 28 O -0.391 6.391 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -18.449 -5.246 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.379 5.379 10 C 0.037 3.963 11 C 0.025 3.975 12 H 0.065 0.935 13 C -0.041 4.041 14 N -0.325 5.325 15 C 0.348 3.652 16 O -0.435 6.435 17 C -0.148 4.148 18 C -0.124 4.124 19 C 0.064 3.936 20 F -0.118 7.118 21 C -0.109 4.109 22 C -0.122 4.122 23 C 0.095 3.905 24 F -0.111 7.111 25 C -0.013 4.013 26 C -0.190 4.190 27 C -0.009 4.009 28 O -0.310 6.310 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.201 0.799 37 H 0.209 0.791 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.034 -18.768 -5.142 20.101 hybrid contribution -0.485 1.000 0.013 1.112 sum 4.548 -17.768 -5.129 19.045 Atomic orbital electron populations 1.69835 1.06702 1.25928 1.59548 1.25536 0.96290 1.01015 1.03800 0.85240 0.77196 0.79270 0.78230 1.20213 1.22434 1.20419 1.19591 0.91496 0.85180 1.41104 0.90399 1.42352 1.05581 1.00717 1.89230 1.20750 0.92927 0.83875 0.98747 1.22538 0.92279 0.94165 0.88491 0.93458 1.22619 0.91601 0.84654 1.05270 1.47941 1.44118 1.34631 1.05812 1.18361 0.79750 0.83525 0.83597 1.90778 1.40535 1.26302 1.85906 1.19566 1.00848 0.95603 0.98822 1.21111 1.01391 0.92549 0.97395 1.17796 0.97793 0.81269 0.96704 1.91581 1.87731 1.39561 1.92971 1.21538 0.94144 0.95225 1.00040 1.21309 1.01470 0.93773 0.95685 1.17766 0.95120 0.81252 0.96362 1.91538 1.86768 1.39427 1.93317 1.22060 0.98311 0.94961 0.85926 1.22419 1.03458 0.95156 0.97997 1.22344 0.89289 0.89674 0.99615 1.86392 1.45488 1.56128 1.43017 0.94197 0.79440 0.95250 0.93956 0.87258 0.88554 0.84451 0.79851 0.79087 0.89727 0.89349 0.86688 0.89764 0.94384 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.48 5.49 -343.44 -1.88 -39.36 16 10 C 0.16 6.32 5.95 86.38 0.51 6.83 16 11 C 0.09 2.70 2.39 31.39 0.08 2.77 16 12 H 0.05 1.61 4.23 -2.39 -0.01 1.60 16 13 C 0.08 2.00 4.56 87.44 0.40 2.40 16 14 N -0.59 -14.59 2.18 -820.46 -1.79 -16.37 16 15 C 0.56 15.98 6.68 86.74 0.58 16.56 16 16 O -0.56 -19.01 16.47 -3.93 -0.06 -19.07 16 17 C -0.14 -3.70 3.90 -20.06 -0.08 -3.78 16 18 C -0.11 -2.81 7.95 22.57 0.18 -2.63 16 19 C 0.08 2.09 7.29 22.33 0.16 2.25 16 20 F -0.14 -4.32 17.26 44.97 0.78 -3.54 16 21 C -0.09 -1.52 10.01 22.36 0.22 -1.29 16 22 C -0.10 -1.56 10.01 22.27 0.22 -1.33 16 23 C 0.12 2.50 7.29 22.67 0.17 2.67 16 24 F -0.13 -3.13 16.83 44.97 0.76 -2.38 16 25 C 0.11 2.20 6.11 86.38 0.53 2.73 16 26 C -0.15 -2.87 5.79 30.30 0.18 -2.69 16 27 C 0.07 1.74 6.38 71.50 0.46 2.19 16 28 O -0.39 -13.22 9.18 -117.83 -1.08 -14.30 16 29 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 30 H 0.37 20.82 7.53 -92.70 -0.70 20.12 16 31 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 34 H 0.10 2.15 6.87 -2.39 -0.02 2.14 16 35 H 0.14 4.08 5.78 -2.91 -0.02 4.06 16 36 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.08 1.87 7.09 -2.38 -0.02 1.86 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 42 H 0.04 1.04 7.40 -2.39 -0.02 1.02 16 43 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -73.80 359.12 4.30 -69.50 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.37 Total: 26.92 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.91 Total: 10.27 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.39 Total: -115.49 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.15 Total: -33.38 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 1.53 Total: -5.92 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.80 4.30 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200696633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.628 kcal (2) G-P(sol) polarization free energy of solvation -73.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds