Wall clock time and date at job start Tue Mar 31 2020 23:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 N 1.46501 * 109.46804 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00421 * 270.00292 * 14 13 12 16 16 C 1.34780 * 119.99496 * 90.00158 * 14 13 12 17 17 O 1.21272 * 120.00668 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.99688 * 179.97438 * 16 14 13 19 19 S 1.80995 * 109.47068 * 179.97438 * 18 16 14 20 20 C 1.76202 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99946 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00292 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00539 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99705 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47237 * 89.99685 * 24 22 20 26 26 H 1.48504 * 109.47243 * 209.99700 * 24 22 20 27 27 H 1.48501 * 109.47297 * 330.00148 * 24 22 20 28 28 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 29 29 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 32 32 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 33 33 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 34 34 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 35 35 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 36 36 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 37 37 H 1.09000 * 109.46993 * 300.00196 * 13 12 11 38 38 H 1.09000 * 109.46880 * 60.00455 * 13 12 11 39 39 H 1.09001 * 109.47418 * 89.99416 * 15 14 13 40 40 H 1.08996 * 109.47301 * 210.00386 * 15 14 13 41 41 H 1.09006 * 109.46959 * 330.00274 * 15 14 13 42 42 H 1.08994 * 109.46926 * 300.00556 * 18 16 14 43 43 H 1.09007 * 109.47012 * 60.00399 * 18 16 14 44 44 H 0.96997 * 120.00495 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7248 3.3731 5.8624 14 7 2.5764 2.9558 7.2589 15 6 1.3067 3.1714 7.9569 16 6 3.6083 2.3735 7.9014 17 8 4.6596 2.1953 7.3237 18 6 3.4559 1.9447 9.3381 19 16 5.0027 1.2013 9.9131 20 6 4.5535 0.8032 11.5698 21 1 3.5620 1.0337 11.9307 22 6 5.4738 0.1935 12.4110 23 7 5.1385 -0.1034 13.6487 24 14 7.1890 -0.2045 11.7870 25 1 8.0895 0.9478 12.0453 26 1 7.7062 -1.4047 12.4922 27 1 7.1349 -0.4729 10.3275 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0394 4.2709 1.3157 34 1 2.7806 3.5330 3.3354 35 1 1.2776 1.9544 5.1312 36 1 2.9554 1.3601 5.1312 37 1 3.7640 3.6408 5.6712 38 1 2.0863 4.2357 5.6716 39 1 0.6641 2.3018 7.8193 40 1 1.4969 3.3182 9.0201 41 1 0.8141 4.0549 7.5506 42 1 3.2188 2.8127 9.9531 43 1 2.6510 1.2136 9.4157 44 1 5.7818 -0.5292 14.2367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528378564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:35 Heat of formation + Delta-G solvation = -3.264559 kcal Electronic energy + Delta-G solvation = -26048.012439 eV Core-core repulsion = 22128.288051 eV Total energy + Delta-G solvation = -3919.724387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85001 -39.83954 -39.14999 -36.07326 -34.88368 -34.28279 -32.44240 -31.52942 -30.67914 -30.18936 -28.30195 -26.51820 -25.61832 -24.36962 -23.93202 -22.73768 -20.76044 -19.98781 -19.39163 -18.76596 -17.71593 -16.93213 -16.70912 -16.38724 -15.80218 -15.59570 -15.27322 -15.05208 -14.93984 -14.91510 -14.33359 -14.07055 -13.85264 -13.61047 -13.39543 -13.26463 -13.10584 -12.79474 -12.63141 -12.49109 -12.37004 -11.96780 -11.77838 -11.53572 -11.49762 -11.25786 -11.09425 -11.01003 -10.61129 -10.09483 -9.95911 -9.86187 -9.56344 -9.40286 -9.11967 -9.00758 -8.76942 -8.50250 -6.92892 -6.29186 -4.01204 1.05963 1.79241 2.22456 2.53143 2.84027 2.97070 3.20369 3.31699 3.34461 3.50881 3.60311 4.03851 4.16127 4.32751 4.52215 4.62991 4.71328 4.78411 4.90262 4.97248 5.00403 5.09853 5.15542 5.15807 5.20302 5.24324 5.34544 5.36121 5.61158 5.70475 5.73596 5.75623 5.83077 5.86377 5.97154 5.98810 6.10248 6.16776 6.46564 6.61695 7.07128 7.30262 7.31570 7.93735 8.07516 8.34653 8.41120 9.16980 10.79940 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.001934 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.999928 B =14475.923041 C =14745.594697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C 0.141 3.859 4 N -0.298 5.298 5 N -0.461 5.461 6 H 0.444 0.556 7 C 0.104 3.896 8 C -0.284 4.284 9 C 0.593 3.407 10 O -0.533 6.533 11 N -0.727 5.727 12 C 0.105 3.895 13 C 0.109 3.891 14 N -0.621 5.621 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.121 4.121 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.186 0.814 34 H 0.395 0.605 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 11.796 -27.076 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.028 4.028 4 N -0.120 5.120 5 N -0.165 5.165 6 H 0.289 0.711 7 C -0.049 4.049 8 C -0.300 4.300 9 C 0.380 3.620 10 O -0.410 6.410 11 N -0.379 5.379 12 C -0.020 4.020 13 C -0.015 4.015 14 N -0.357 5.357 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.203 0.797 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.998 10.660 -28.799 32.000 hybrid contribution -0.215 1.063 1.269 1.670 sum -9.213 11.723 -27.530 31.308 Atomic orbital electron populations 1.21614 0.93860 1.02264 1.01883 1.20163 0.96607 0.87925 1.04373 1.22521 0.94624 0.97041 0.88578 1.77204 1.21968 0.90457 1.22413 1.46123 1.51705 1.13249 1.05451 0.71110 1.23158 0.97158 0.98790 0.85799 1.20303 1.19489 0.95611 0.94563 1.17196 0.76921 0.84497 0.83373 1.90780 1.46298 1.19831 1.84100 1.45648 1.69242 1.16936 1.06068 1.21748 1.02297 0.98698 0.79214 1.21472 1.03434 0.95733 0.80880 1.47697 1.13937 1.62572 1.11487 1.21863 0.84886 1.01483 0.98303 1.20381 0.82861 0.76340 0.88403 1.90702 1.26990 1.53072 1.67974 1.23316 1.05302 1.04325 0.94217 1.84805 1.14605 1.77403 1.14886 1.22298 1.03710 1.46416 0.94409 0.89359 1.24712 0.98757 0.93810 0.94036 1.69932 1.35929 1.40291 1.05477 0.86739 0.84216 0.79035 0.81887 1.19238 1.19934 1.15894 0.93011 0.91730 0.92199 0.90499 0.87900 0.79695 0.77106 0.91164 0.90552 0.89229 0.90188 0.92351 0.90271 0.91151 0.88428 0.88333 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.50 5.97 -27.89 -0.17 -0.66 16 3 C 0.14 1.44 6.52 -82.02 -0.53 0.91 16 4 N -0.30 -2.85 12.63 33.89 0.43 -2.43 16 5 N -0.46 -2.62 7.29 30.85 0.22 -2.40 16 6 H 0.44 0.90 8.96 -182.72 -1.64 -0.74 16 7 C 0.10 0.55 11.52 -16.56 -0.19 0.36 16 8 C -0.28 -2.64 6.13 -105.07 -0.64 -3.28 16 9 C 0.59 6.63 7.81 -12.52 -0.10 6.54 16 10 O -0.53 -7.94 14.92 5.28 0.08 -7.86 16 11 N -0.73 -6.24 5.54 -61.38 -0.34 -6.58 16 12 C 0.11 1.12 6.00 -4.04 -0.02 1.09 16 13 C 0.11 1.03 5.56 -4.04 -0.02 1.01 16 14 N -0.62 -7.54 2.87 -181.57 -0.52 -8.07 16 15 C 0.08 0.69 10.29 59.84 0.62 1.30 16 16 C 0.53 9.18 7.69 -10.98 -0.08 9.10 16 17 O -0.51 -10.68 15.44 5.56 0.09 -10.60 16 18 C -0.12 -2.29 4.71 36.01 0.17 -2.12 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 20 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 24 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.23 -5.97 6.74 56.52 0.38 -5.59 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.15 6.55 -51.92 -0.34 0.81 16 33 H 0.19 0.13 7.46 -52.49 -0.39 -0.26 16 34 H 0.40 1.94 7.40 -40.82 -0.30 1.64 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 38 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 41 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 42 H 0.10 1.70 7.40 -51.92 -0.38 1.31 16 43 H 0.10 1.76 8.11 -51.91 -0.42 1.34 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -38.80 386.40 -8.10 -46.90 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.55 Total: -2.10 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.40 Total: 1.53 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.57 Total: -45.11 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.80 -8.10 -46.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528378564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.636 kcal (2) G-P(sol) polarization free energy of solvation -38.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds