Wall clock time and date at job start Wed Apr 1 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.99648 * 2 1 4 4 C 1.54325 * 109.88336 * 121.09515 * 2 1 3 5 5 H 1.09000 * 110.71906 * 23.07047 * 4 2 1 6 6 N 1.46902 * 110.71690 * 259.97415 * 4 2 1 7 7 C 1.46904 * 110.99713 * 157.44108 * 6 4 2 8 8 C 1.50695 * 109.46798 * 179.97438 * 7 6 4 9 9 O 1.21274 * 120.00413 * 0.27179 * 8 7 6 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.47199 * 109.47440 * 179.97438 * 11 10 8 13 13 N 9.48697 * 100.75707 * 89.80138 * 2 1 3 14 14 C 1.55150 * 103.09920 * 141.51975 * 4 2 1 15 15 C 1.55120 * 101.49027 * 324.71910 * 14 4 2 16 16 N 1.47019 * 109.88162 * 238.90319 * 2 1 3 17 17 C 1.34783 * 125.64867 * 61.60661 * 16 2 1 18 18 O 1.21283 * 119.99902 * 359.97438 * 17 16 2 19 19 C 1.50691 * 120.00120 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.47353 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00016 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00442 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99921 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99674 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99847 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47416 * 89.99841 * 25 23 21 27 27 H 1.48495 * 109.47207 * 210.00050 * 25 23 21 28 28 H 1.48502 * 109.47452 * 330.00102 * 25 23 21 29 29 H 1.08998 * 109.46692 * 298.90423 * 1 2 3 30 30 H 1.09002 * 109.46946 * 58.90481 * 1 2 3 31 31 H 1.08998 * 109.46979 * 178.90468 * 1 2 3 32 32 H 1.00901 * 111.00042 * 33.48958 * 6 4 2 33 33 H 1.09005 * 109.47078 * 59.99805 * 7 6 4 34 34 H 1.09002 * 109.47005 * 300.00021 * 7 6 4 35 35 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 37 37 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 38 38 H 1.09010 * 111.00421 * 82.66299 * 14 4 2 39 39 H 1.09001 * 111.00376 * 206.50543 * 14 4 2 40 40 H 1.09001 * 110.20221 * 277.95711 * 15 14 4 41 41 H 1.09000 * 110.51009 * 155.75307 * 15 14 4 42 42 H 1.09000 * 109.47274 * 300.00234 * 19 17 16 43 43 H 1.09005 * 109.47179 * 59.99730 * 19 17 16 44 44 H 0.97001 * 119.99464 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0550 -0.7495 1.2427 5 1 1.3041 -1.4437 1.6201 6 7 2.4567 0.1987 2.2903 7 6 2.4429 -0.4409 3.6127 8 6 2.8601 0.5600 4.6592 9 8 3.1364 1.6958 4.3360 10 7 2.9213 0.1943 5.9550 11 6 3.3274 1.1672 6.9723 12 6 3.3135 0.5263 8.2974 13 7 3.3008 0.0323 9.3202 14 6 3.2870 -1.5177 0.6957 15 6 2.8146 -1.8794 -0.7368 16 7 2.0301 -0.7141 -1.1839 17 6 1.8074 -0.3621 -2.4657 18 8 1.1429 0.6206 -2.7181 19 6 2.3842 -1.1894 -3.5854 20 16 1.9119 -0.4655 -5.1757 21 6 2.6960 -1.5995 -6.2730 22 1 3.2579 -2.4328 -5.8776 23 6 2.5925 -1.4212 -7.6456 24 7 3.1786 -2.2681 -8.4653 25 14 1.6213 0.0204 -8.3296 26 1 2.5217 1.1895 -8.4959 27 1 1.0445 -0.3515 -9.6464 28 1 0.5255 0.3694 -7.3900 29 1 -0.3632 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 1.8698 1.0195 2.2795 33 1 3.1371 -1.2813 3.6171 34 1 1.4372 -0.7993 3.8326 35 1 2.6972 -0.7132 6.2139 36 1 4.3331 1.5251 6.7518 37 1 2.6336 2.0079 6.9684 38 1 4.1665 -0.8744 0.6650 39 1 3.4812 -2.4144 1.2843 40 1 2.1887 -2.7715 -0.7128 41 1 3.6706 -2.0349 -1.3934 42 1 3.4709 -1.2066 -3.5020 43 1 1.9988 -2.2070 -3.5210 44 1 3.1060 -2.1437 -9.4245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571450921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:34 Heat of formation + Delta-G solvation = -28.853231 kcal Electronic energy + Delta-G solvation = -25928.389465 eV Core-core repulsion = 22007.555470 eV Total energy + Delta-G solvation = -3920.833996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56469 -40.05503 -37.87338 -37.47289 -35.30393 -34.99451 -32.43452 -31.93845 -31.13838 -29.62945 -28.53341 -26.66976 -25.60712 -24.50487 -22.95627 -21.29474 -20.95430 -19.46616 -18.92010 -17.68602 -17.41021 -16.80908 -16.76514 -16.53279 -16.24332 -15.70597 -15.16767 -14.99087 -14.84657 -14.64408 -14.19048 -14.02116 -13.79609 -13.72756 -13.53540 -13.36626 -13.18271 -12.99839 -12.89683 -12.74239 -12.58883 -12.45137 -12.00545 -11.84789 -11.59932 -11.29859 -11.25239 -11.00433 -10.92129 -10.60426 -10.48503 -9.95106 -9.85075 -9.46579 -8.99750 -8.98580 -8.59148 -8.48892 -6.91240 -6.28464 -4.00062 1.53743 1.94449 2.04133 2.57154 2.71428 2.95992 3.09305 3.17516 3.34157 3.51219 3.57974 3.73183 4.04299 4.14051 4.33802 4.34803 4.55914 4.65406 4.69323 4.71129 4.74871 4.79354 5.00451 5.08061 5.10822 5.16534 5.27264 5.30676 5.44267 5.47271 5.52926 5.60676 5.77522 5.84061 5.93173 6.01994 6.13290 6.36995 6.45058 6.63277 6.72901 6.83261 7.52458 7.58937 7.94589 8.41939 8.45537 9.17866 10.80750 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037540 B = 0.001694 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.688087 B =16525.708887 C =16820.917412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.085 0.915 4 C 0.078 3.922 5 H 0.066 0.934 6 N -0.661 5.661 7 C 0.043 3.957 8 C 0.520 3.480 9 O -0.512 6.512 10 N -0.736 5.736 11 C 0.220 3.780 12 C 0.193 3.807 13 N -0.404 5.404 14 C -0.122 4.122 15 C 0.099 3.901 16 N -0.618 5.618 17 C 0.549 3.451 18 O -0.515 6.515 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.356 0.644 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 0.833 31.108 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.103 0.897 4 C -0.032 4.032 5 H 0.084 0.916 6 N -0.295 5.295 7 C -0.090 4.090 8 C 0.306 3.694 9 O -0.384 6.384 10 N -0.392 5.392 11 C 0.094 3.906 12 C -0.126 4.126 13 N -0.082 5.082 14 C -0.161 4.161 15 C -0.025 4.025 16 N -0.356 5.356 17 C 0.337 3.663 18 O -0.390 6.390 19 C -0.268 4.268 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.529 2.292 31.622 31.742 hybrid contribution -0.470 -1.137 -0.215 1.249 sum -1.999 1.155 31.408 31.492 Atomic orbital electron populations 1.22192 0.94695 1.02394 1.03088 1.21513 0.94227 0.96974 0.83961 0.89724 1.22663 0.96397 0.93497 0.90641 0.91613 1.60203 1.59849 1.08395 1.01079 1.21830 1.01887 0.96525 0.88720 1.20626 0.77154 0.89457 0.82193 1.90789 1.46798 1.20371 1.80490 1.45836 1.71812 1.15171 1.06427 1.18599 1.04668 0.90881 0.76498 1.29032 0.93681 0.94753 0.95179 1.81320 1.08311 1.06894 1.11658 1.22901 0.98348 1.00310 0.94538 1.22371 0.95776 0.88868 0.95499 1.48422 1.53834 1.28759 1.04560 1.19963 0.79859 0.85006 0.81451 1.90693 1.38719 1.26959 1.82584 1.23257 1.04080 1.02407 0.97062 1.84789 1.70746 1.40431 0.95588 1.22311 1.37841 1.13863 0.92844 0.89405 1.24703 0.94530 0.96203 0.95806 1.69939 1.42227 1.35996 1.03533 0.86738 0.82264 0.82796 0.80076 1.19187 1.19956 1.15938 0.92252 0.90413 0.92472 0.82371 0.87456 0.91667 0.75830 0.86565 0.86653 0.89211 0.90140 0.91363 0.89885 0.88568 0.88600 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.09 37.16 0.34 -1.40 16 2 C 0.14 1.48 2.98 -66.95 -0.20 1.28 16 3 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 4 C 0.08 0.55 2.78 -65.88 -0.18 0.37 16 5 H 0.07 0.37 7.56 -51.93 -0.39 -0.02 16 6 N -0.66 -4.38 5.95 -106.05 -0.63 -5.01 16 7 C 0.04 0.15 6.04 -4.98 -0.03 0.12 16 8 C 0.52 2.51 7.87 -10.98 -0.09 2.42 16 9 O -0.51 -4.64 16.20 5.56 0.09 -4.55 16 10 N -0.74 -1.44 5.54 -63.16 -0.35 -1.79 16 11 C 0.22 0.36 6.15 -6.83 -0.04 0.32 16 12 C 0.19 0.74 15.55 -20.76 -0.32 0.42 16 13 N -0.40 -2.94 18.54 42.15 0.78 -2.16 16 14 C -0.12 -0.87 6.77 -24.47 -0.17 -1.03 16 15 C 0.10 0.94 6.70 -2.42 -0.02 0.92 16 16 N -0.62 -8.15 3.07 -162.89 -0.50 -8.65 16 17 C 0.55 9.88 7.66 -10.99 -0.08 9.79 16 18 O -0.52 -11.07 14.91 5.56 0.08 -10.99 16 19 C -0.12 -2.29 5.16 36.00 0.19 -2.10 16 20 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 21 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 22 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 23 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 25 Si 0.86 21.76 27.74 -169.99 -4.71 17.04 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.08 6.90 -51.93 -0.36 0.72 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.36 2.59 8.08 -39.29 -0.32 2.27 16 33 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.11 8.08 -51.93 -0.42 -0.31 16 35 H 0.41 -0.03 8.45 -40.82 -0.34 -0.38 16 36 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.12 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 42 H 0.10 1.76 7.85 -51.92 -0.41 1.35 16 43 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -37.87 389.63 -7.40 -45.27 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.42 Total: -2.93 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.39 Total: -0.83 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.08 Total: -43.30 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.17 Total: -15.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.87 -7.40 -45.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571450921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.417 kcal (2) G-P(sol) polarization free energy of solvation -37.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds