Wall clock time and date at job start Wed Apr 1 2020 01:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.50268 * 2 1 4 4 C 1.53123 * 109.53424 * 120.05632 * 2 1 3 5 5 C 1.53122 * 109.15476 * 177.57490 * 4 2 1 6 6 H 1.08998 * 109.50417 * 62.36600 * 5 4 2 7 7 C 1.50705 * 109.50204 * 182.44285 * 5 4 2 8 8 O 1.20821 * 119.99948 * 359.92763 * 7 5 4 9 9 O 1.34234 * 119.99902 * 179.64202 * 7 5 4 10 10 C 1.53040 * 109.31504 * 302.40422 * 5 4 2 11 11 N 1.46850 * 109.51952 * 59.15609 * 10 5 4 12 12 C 1.46903 * 110.99690 * 174.16237 * 11 10 5 13 13 N 1.46497 * 109.47010 * 66.05067 * 12 11 10 14 14 N 1.40164 * 126.14654 * 90.02418 * 13 12 11 15 15 C 1.32234 * 107.75875 * 180.02562 * 14 13 12 16 16 C 1.40122 * 125.92532 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99963 * 174.05364 * 16 15 14 18 18 C 1.40038 * 120.00011 * 354.05245 * 16 15 14 19 19 N 1.30796 * 119.99997 * 5.99781 * 18 16 15 20 20 Si 1.86797 * 119.99817 * 186.00329 * 18 16 15 21 21 H 1.48505 * 109.47546 * 94.98211 * 20 18 16 22 22 H 1.48500 * 109.47150 * 214.97974 * 20 18 16 23 23 H 1.48496 * 109.47395 * 334.97974 * 20 18 16 24 24 N 1.38496 * 108.15004 * 359.97438 * 15 14 13 25 25 C 1.46500 * 125.83729 * 180.02562 * 24 15 14 26 26 C 1.34731 * 108.32762 * 359.73711 * 24 15 14 27 27 S 1.71203 * 125.97290 * 180.26349 * 26 24 15 28 28 C 1.46840 * 111.19999 * 298.26174 * 11 10 5 29 29 H 1.08996 * 109.47045 * 180.08202 * 1 2 3 30 30 H 1.09001 * 109.47111 * 300.07716 * 1 2 3 31 31 H 1.08997 * 109.46874 * 60.07909 * 1 2 3 32 32 H 1.09005 * 109.49268 * 57.69410 * 4 2 1 33 33 H 1.08996 * 109.55772 * 297.49852 * 4 2 1 34 34 H 0.96696 * 117.00109 * 180.27662 * 9 7 5 35 35 H 1.08995 * 109.46535 * 179.17417 * 10 5 4 36 36 H 1.09001 * 109.46161 * 299.14870 * 10 5 4 37 37 H 1.08998 * 109.46811 * 186.05324 * 12 11 10 38 38 H 1.08995 * 109.46832 * 306.04697 * 12 11 10 39 39 H 0.97002 * 119.99874 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.46888 * 90.00208 * 25 24 15 41 41 H 1.09002 * 109.46875 * 210.00163 * 25 24 15 42 42 H 1.08997 * 109.47319 * 330.00103 * 25 24 15 43 43 H 1.09001 * 109.46343 * 181.75367 * 28 11 10 44 44 H 1.09000 * 109.46532 * 301.73298 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7228 1.2490 5 6 3.5720 -0.7709 1.2100 6 1 3.9686 0.2442 1.2293 7 6 4.0821 -1.5332 2.4058 8 8 3.3029 -1.9902 3.2081 9 8 5.4018 -1.7094 2.5764 10 6 4.0238 -1.4716 -0.0734 11 7 3.5092 -0.7409 -1.2386 12 6 4.0372 -1.3043 -2.4884 13 7 3.5166 -2.6615 -2.6704 14 7 2.3341 -3.0110 -3.3368 15 6 2.2155 -4.3270 -3.2845 16 6 1.1694 -5.0806 -3.8333 17 1 1.2156 -6.1595 -3.8185 18 6 0.0640 -4.4348 -4.4009 19 7 0.0600 -3.1328 -4.5253 20 14 -1.4047 -5.4330 -4.9803 21 1 -2.4289 -5.4763 -3.9058 22 1 -1.9855 -4.8012 -6.1923 23 1 -0.9677 -6.8149 -5.3036 24 7 3.3051 -4.8313 -2.5943 25 6 3.5618 -6.2457 -2.3118 26 6 4.0920 -3.7992 -2.2324 27 16 5.5629 -3.9124 -1.3636 28 6 2.0410 -0.7231 -1.2482 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6461 -1.7382 1.2697 33 1 1.7171 -0.1859 2.1402 34 1 5.6809 -2.2085 3.3561 35 1 5.1129 -1.4942 -0.1107 36 1 3.6389 -2.4913 -0.0852 37 1 3.7277 -0.6808 -3.3272 38 1 5.1256 -1.3358 -2.4414 39 1 -0.7055 -2.6855 -4.9188 40 1 4.1465 -6.6780 -3.1239 41 1 4.1161 -6.3348 -1.3775 42 1 2.6139 -6.7765 -2.2240 43 1 1.6899 -0.2020 -2.1389 44 1 1.6653 -1.7463 -1.2544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589282221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:15 Heat of formation + Delta-G solvation = -18.620440 kcal Electronic energy + Delta-G solvation = -29210.672561 eV Core-core repulsion = 25290.282293 eV Total energy + Delta-G solvation = -3920.390268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08900 -40.36439 -38.57131 -36.03904 -35.21727 -34.07968 -33.14731 -32.16315 -30.57653 -27.90152 -26.78832 -26.34984 -25.34729 -24.57451 -22.47574 -21.19543 -21.03525 -20.65592 -19.49492 -17.90154 -17.78012 -16.84367 -16.47422 -15.90489 -15.79989 -15.57880 -15.14858 -14.97900 -14.69939 -14.34764 -14.07233 -13.83735 -13.65056 -13.31497 -12.94460 -12.37888 -12.31736 -12.28027 -12.10816 -11.87634 -11.68800 -11.59487 -11.44706 -11.39306 -11.12140 -11.07292 -10.69221 -10.64136 -10.57878 -10.50176 -10.33338 -10.20949 -10.05038 -9.62403 -9.27073 -8.94455 -8.47854 -7.13036 -6.84107 -6.71677 -5.21713 2.23691 2.33597 2.50774 2.72269 2.86466 2.90126 3.16197 3.34198 3.45083 3.59078 4.04093 4.15130 4.72802 4.75536 4.92282 4.96688 5.07109 5.26751 5.41026 5.48408 5.52199 5.67166 5.77585 5.78388 5.78691 5.85334 5.90799 5.96730 6.02718 6.09845 6.11900 6.21422 6.31280 6.36081 6.42358 6.48919 6.57324 6.64096 6.72805 6.92550 7.09752 7.20298 7.49475 7.68461 8.03232 8.15511 8.27766 9.05803 9.84566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.004745 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.714218 B = 5898.973040 C = 7111.112142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.100 4.100 5 C -0.078 4.078 6 H 0.113 0.887 7 C 0.490 3.510 8 O -0.522 6.522 9 O -0.507 6.507 10 C 0.067 3.933 11 N -0.529 5.529 12 C 0.312 3.688 13 N -0.402 5.402 14 N -0.340 5.340 15 C 0.373 3.627 16 C -0.438 4.438 17 H 0.096 0.904 18 C 0.078 3.922 19 N -0.735 5.735 20 Si 0.927 3.073 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.259 1.259 24 N -0.515 5.515 25 C 0.099 3.901 26 C 0.463 3.537 27 S -0.708 6.708 28 C 0.059 3.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.285 0.715 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 4.247 4.907 6.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.137 4.137 5 C -0.097 4.097 6 H 0.131 0.869 7 C 0.333 3.667 8 O -0.410 6.410 9 O -0.317 6.317 10 C -0.061 4.061 11 N -0.253 5.253 12 C 0.101 3.899 13 N -0.192 5.192 14 N -0.172 5.172 15 C 0.124 3.876 16 C -0.479 4.479 17 H 0.114 0.886 18 C -0.149 4.149 19 N -0.359 5.359 20 Si 0.750 3.250 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.183 1.183 24 N -0.216 5.216 25 C -0.044 4.044 26 C 0.094 3.906 27 S -0.584 6.584 28 C -0.068 4.068 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.256 5.968 4.900 7.726 hybrid contribution -1.187 -2.281 -0.031 2.571 sum -1.442 3.687 4.869 6.276 Atomic orbital electron populations 1.21725 0.94513 1.02189 1.01541 1.21160 0.95635 0.99836 0.93846 0.90396 1.21572 0.91850 1.01979 0.98326 1.21126 0.97169 1.00407 0.91045 0.86871 1.23414 0.79906 0.76998 0.86427 1.90684 1.57432 1.47511 1.45422 1.84589 1.26092 1.70748 1.50319 1.22309 1.02117 0.94951 0.86729 1.62574 1.09619 1.50995 1.02081 1.22529 0.99056 0.75816 0.92452 1.50431 1.19271 1.06066 1.43425 1.79369 1.00754 1.09036 1.28008 1.21302 0.86626 0.89023 0.90639 1.18365 0.99871 0.94270 1.35436 0.88553 1.25811 0.99650 0.95316 0.94098 1.69868 1.29363 1.08877 1.27814 0.85972 0.79804 0.80313 0.78932 1.19133 1.19718 1.18273 1.46038 1.20403 1.07632 1.47500 1.21758 1.02595 0.77199 1.02847 1.23099 0.92773 0.83817 0.90948 1.92799 1.13162 1.94766 1.57664 1.22168 0.86033 1.00728 0.97893 0.92593 0.92720 0.92249 0.91378 0.91175 0.73600 0.87562 0.93337 0.87411 0.86877 0.90344 0.91487 0.89264 0.89778 0.90035 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 37.16 0.34 -1.49 16 2 C -0.09 -1.19 2.88 -90.53 -0.26 -1.45 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.10 -1.45 3.87 -26.60 -0.10 -1.55 16 5 C -0.08 -1.14 2.79 -91.69 -0.26 -1.40 16 6 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 7 C 0.49 7.55 7.63 36.01 0.27 7.82 16 8 O -0.52 -9.26 16.73 -18.75 -0.31 -9.58 16 9 O -0.51 -6.73 13.34 -39.27 -0.52 -7.26 16 10 C 0.07 1.15 3.23 -3.83 -0.01 1.14 16 11 N -0.53 -8.69 4.87 -238.58 -1.16 -9.85 16 12 C 0.31 5.58 6.25 -63.31 -0.40 5.19 16 13 N -0.40 -8.64 2.83 -65.05 -0.18 -8.82 16 14 N -0.34 -8.07 9.86 31.21 0.31 -7.77 16 15 C 0.37 8.80 7.49 -155.28 -1.16 7.63 16 16 C -0.44 -9.87 8.94 -38.20 -0.34 -10.21 16 17 H 0.10 1.98 7.21 -52.49 -0.38 1.60 16 18 C 0.08 1.69 5.49 -17.32 -0.10 1.60 16 19 N -0.74 -16.87 11.93 55.55 0.66 -16.20 16 20 Si 0.93 16.16 29.56 -169.99 -5.03 11.14 16 21 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 22 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 24 N -0.51 -11.27 3.17 -124.66 -0.39 -11.66 16 25 C 0.10 1.74 10.63 59.85 0.64 2.38 16 26 C 0.46 10.40 6.66 -86.93 -0.58 9.82 16 27 S -0.71 -16.25 27.05 -107.50 -2.91 -19.16 16 28 C 0.06 1.00 4.25 -3.84 -0.02 0.98 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.41 3.61 9.10 45.56 0.41 4.03 16 35 H 0.11 1.93 7.37 -51.93 -0.38 1.55 16 36 H 0.05 1.02 6.30 -51.93 -0.33 0.69 16 37 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.11 2.00 7.55 -51.93 -0.39 1.61 16 39 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.56 7.62 -51.93 -0.40 1.16 16 42 H 0.08 1.31 7.39 -51.93 -0.38 0.93 16 43 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 44 H 0.05 1.07 7.04 -51.93 -0.37 0.71 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -29.58 369.18 -11.52 -41.10 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.57 Total: 12.03 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: -1.97 Total: 20.46 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.77 Total: -54.30 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.84 Total: -16.83 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.14 kcal Atomic # 16 Polarization: -16.25 SS G_CDS: -2.91 Total: -19.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.58 -11.52 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589282221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.477 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds