Wall clock time and date at job start Tue Mar 31 2020 22:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 N 1.46498 * 109.46811 * 179.97438 * 3 2 1 5 5 C 1.46502 * 119.99656 * 85.03589 * 4 3 2 6 6 C 1.53000 * 109.47406 * 95.28853 * 5 4 3 7 7 N 1.46503 * 109.47017 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99805 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00252 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99787 * 179.97438 * 8 7 6 11 11 S 1.81007 * 109.47125 * 180.02562 * 10 8 7 12 12 C 1.76195 * 99.99831 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00387 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00148 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99753 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47059 * 90.00106 * 16 14 12 18 18 H 1.48501 * 109.46818 * 210.00503 * 16 14 12 19 19 H 1.48502 * 109.46827 * 330.00111 * 16 14 12 20 20 C 1.34775 * 120.00345 * 265.02685 * 4 3 2 21 21 O 1.21603 * 120.00052 * 5.44902 * 20 4 3 22 22 C 1.47405 * 120.00079 * 185.45440 * 20 4 3 23 23 N 1.31620 * 125.86491 * 354.75959 * 22 20 4 24 24 C 1.33097 * 109.09640 * 179.83750 * 23 22 20 25 25 C 1.35561 * 108.34774 * 0.43420 * 24 23 22 26 26 N 1.35396 * 107.16366 * 359.73730 * 25 24 23 27 27 H 0.97003 * 126.44097 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46884 * 59.99087 * 1 2 3 29 29 H 1.08991 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46750 * 299.99918 * 1 2 3 31 31 H 1.09005 * 109.46750 * 240.00082 * 2 1 3 32 32 H 1.08995 * 109.46974 * 120.01180 * 2 1 3 33 33 H 1.09000 * 109.46623 * 60.00428 * 3 2 1 34 34 H 1.09001 * 109.47130 * 300.00666 * 3 2 1 35 35 H 1.08998 * 109.46598 * 215.28832 * 5 4 3 36 36 H 1.09006 * 109.46892 * 335.28154 * 5 4 3 37 37 H 1.09000 * 109.46509 * 299.99443 * 6 5 4 38 38 H 1.09001 * 109.47248 * 59.99992 * 6 5 4 39 39 H 0.97007 * 119.99898 * 359.97438 * 7 6 5 40 40 H 1.08998 * 109.46908 * 300.00090 * 10 8 7 41 41 H 1.09001 * 109.47021 * 60.00153 * 10 8 7 42 42 H 0.97006 * 119.99628 * 179.97438 * 15 14 12 43 43 H 1.07998 * 125.82374 * 180.21207 * 24 23 22 44 44 H 1.08004 * 126.41890 * 179.77572 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2380 1.3322 -1.2631 6 6 4.6086 2.7306 -1.7613 7 7 5.3420 2.6204 -3.0247 8 6 5.7722 3.7322 -3.6533 9 8 5.5525 4.8239 -3.1729 10 6 6.5272 3.6188 -4.9526 11 16 6.9654 5.2731 -5.5422 12 6 7.8123 4.8536 -7.0292 13 1 7.9216 3.8178 -7.3146 14 6 8.3401 5.8543 -7.8333 15 7 8.9723 5.5410 -8.9444 16 14 8.1517 7.6460 -7.3393 17 1 9.3083 8.0527 -6.5014 18 1 8.1013 8.4928 -8.5581 19 1 6.8957 7.8167 -6.5657 20 6 4.1785 1.5436 1.1636 21 8 3.5743 1.5353 2.2189 22 6 5.6476 1.6645 1.1565 23 7 6.4224 1.5889 0.0953 24 6 7.6899 1.7470 0.4694 25 6 7.7198 1.9192 1.8137 26 7 6.4396 1.8684 2.2515 27 1 6.1407 1.9592 3.1699 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5140 0.8898 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1460 0.7498 -1.1068 36 1 3.6114 0.8364 -2.0045 37 1 3.7005 3.3129 -1.9175 38 1 5.2352 3.2263 -1.0199 39 1 5.5181 1.7471 -3.4088 40 1 7.4354 3.0371 -4.7955 41 1 5.9014 3.1223 -5.6943 42 1 9.3408 6.2404 -9.5066 43 1 8.5484 1.7361 -0.1858 44 1 8.5998 2.0694 2.4215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759054309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:19 Heat of formation + Delta-G solvation = -5.878995 kcal Electronic energy + Delta-G solvation = -26806.049707 eV Core-core repulsion = 22886.211949 eV Total energy + Delta-G solvation = -3919.837758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62664 -40.07697 -39.08446 -36.86487 -34.84901 -33.58981 -32.86390 -32.41060 -30.28278 -30.21647 -28.10342 -26.76205 -25.58329 -23.84209 -23.02673 -21.88835 -21.83018 -20.52008 -20.21694 -18.41163 -17.74889 -17.08959 -16.68137 -16.35349 -15.96365 -15.60995 -15.35632 -15.10860 -14.93637 -14.70596 -14.49323 -14.25638 -14.09016 -13.77532 -13.65789 -13.50076 -13.18260 -12.77583 -12.54966 -12.41912 -12.19547 -12.14549 -11.70133 -11.54018 -11.23653 -11.06543 -10.98586 -10.69899 -10.57722 -10.55701 -10.24405 -9.83512 -9.48291 -9.19796 -8.98110 -8.90425 -8.79225 -8.45488 -6.87816 -6.26384 -3.97324 0.97767 2.06932 2.26424 2.77198 2.98505 3.03372 3.09263 3.34715 3.42431 3.53094 3.68496 3.94779 4.35784 4.46835 4.56565 4.61155 4.74495 4.78617 4.88755 4.90973 4.93599 5.04991 5.09667 5.12789 5.28385 5.33852 5.38571 5.45595 5.54967 5.66312 5.68811 5.73912 5.83635 5.91138 5.96142 6.07735 6.16394 6.32616 6.61894 6.74260 6.84310 7.35680 7.68542 7.73190 7.96858 8.44567 8.60738 9.20128 10.82849 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.002481 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.247910 B =11281.001536 C =12553.745468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.113 3.887 4 N -0.585 5.585 5 C 0.091 3.909 6 C 0.119 3.881 7 N -0.726 5.726 8 C 0.532 3.468 9 O -0.523 6.523 10 C -0.122 4.122 11 S -0.144 6.144 12 C -0.520 4.520 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.235 1.235 20 C 0.608 3.392 21 O -0.541 6.541 22 C 0.137 3.863 23 N -0.430 5.430 24 C -0.023 4.023 25 C -0.020 4.020 26 N -0.525 5.525 27 H 0.429 0.571 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.270 0.730 43 H 0.181 0.819 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -14.363 22.790 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.008 4.008 4 N -0.316 5.316 5 C -0.032 4.032 6 C -0.007 4.007 7 N -0.380 5.380 8 C 0.318 3.682 9 O -0.397 6.397 10 C -0.273 4.273 11 S 0.083 5.917 12 C -0.667 4.667 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.518 5.518 16 Si 0.681 3.319 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.159 1.159 20 C 0.395 3.605 21 O -0.418 6.418 22 C -0.123 4.123 23 N -0.153 5.153 24 C -0.176 4.176 25 C -0.159 4.159 26 N -0.126 5.126 27 H 0.268 0.732 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.198 0.802 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.938 -12.614 23.184 28.570 hybrid contribution 0.853 -0.681 0.380 1.156 sum -10.085 -13.295 23.564 28.874 Atomic orbital electron populations 1.21692 0.94849 1.02085 1.02142 1.21879 0.96397 0.96730 1.02717 1.21708 0.77500 0.97628 1.04003 1.47454 1.06861 1.71315 1.05996 1.22184 0.98750 0.97909 0.84368 1.21463 0.96266 0.96663 0.86261 1.45660 1.59094 1.09206 1.24073 1.20213 0.78588 0.83889 0.85555 1.90696 1.55790 1.26732 1.66512 1.23263 1.02579 1.04953 0.96475 1.84797 1.73413 1.04856 1.28666 1.22326 1.40445 0.97652 1.06306 0.89382 1.24715 0.93454 0.99320 0.93864 1.69942 1.35391 1.33986 1.12482 0.86737 0.81439 0.84469 0.79220 1.19254 1.20010 1.15914 1.16542 0.83333 0.76594 0.84062 1.90833 1.68854 1.51596 1.30469 1.22548 0.93772 1.12758 0.83270 1.70396 1.02502 1.15795 1.26597 1.22658 0.95228 1.06650 0.93077 1.23046 0.87233 1.08041 0.97622 1.42907 1.06760 1.51980 1.11003 0.73163 0.92379 0.92363 0.92446 0.91559 0.91539 0.89328 0.89775 0.86167 0.90020 0.92473 0.91041 0.76702 0.88481 0.88540 0.91991 0.80199 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.14 -0.95 6.26 -26.73 -0.17 -1.11 16 3 C 0.11 0.89 5.40 -4.04 -0.02 0.87 16 4 N -0.59 -5.50 2.48 -174.96 -0.43 -5.93 16 5 C 0.09 0.80 5.11 -4.04 -0.02 0.77 16 6 C 0.12 1.42 5.42 -4.04 -0.02 1.39 16 7 N -0.73 -9.22 5.56 -60.29 -0.33 -9.55 16 8 C 0.53 9.50 7.85 -10.99 -0.09 9.42 16 9 O -0.52 -11.55 15.86 5.56 0.09 -11.46 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 12 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 13 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 14 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 15 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 16 Si 0.86 21.87 27.74 -169.99 -4.71 17.16 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 20 C 0.61 6.80 7.62 -12.53 -0.10 6.70 16 21 O -0.54 -7.03 16.65 5.27 0.09 -6.95 16 22 C 0.14 1.43 7.34 -154.52 -1.13 0.30 16 23 N -0.43 -4.54 6.22 -11.26 -0.07 -4.61 16 24 C -0.02 -0.21 11.85 -17.96 -0.21 -0.42 16 25 C -0.02 -0.14 12.00 -16.94 -0.20 -0.34 16 26 N -0.52 -4.14 6.15 -10.78 -0.07 -4.21 16 27 H 0.43 2.49 8.96 -40.82 -0.37 2.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.78 7.35 -51.93 -0.38 0.40 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.12 1.10 5.60 -51.93 -0.29 0.81 16 36 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.03 6.59 -51.93 -0.34 0.69 16 39 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 40 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.19 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -37.18 385.29 -8.38 -45.56 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.37 Total: 2.65 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.16 Total: 3.01 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.13 Total: -50.13 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.18 -8.38 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759054309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.683 kcal (2) G-P(sol) polarization free energy of solvation -37.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds