Wall clock time and date at job start Tue Mar 31 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 N 1.46498 * 109.46811 * 179.97438 * 3 2 1 5 5 C 1.46502 * 119.99656 * 85.03589 * 4 3 2 6 6 C 1.53000 * 109.47406 * 95.28853 * 5 4 3 7 7 N 1.46503 * 109.47017 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99805 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00252 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99787 * 179.97438 * 8 7 6 11 11 S 1.81007 * 109.47125 * 180.02562 * 10 8 7 12 12 C 1.76195 * 99.99831 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00387 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00148 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99753 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47059 * 90.00106 * 16 14 12 18 18 H 1.48501 * 109.46818 * 210.00503 * 16 14 12 19 19 H 1.48502 * 109.46827 * 330.00111 * 16 14 12 20 20 C 1.34775 * 120.00345 * 265.02685 * 4 3 2 21 21 O 1.21603 * 120.00052 * 5.44902 * 20 4 3 22 22 C 1.47405 * 120.00079 * 185.45440 * 20 4 3 23 23 N 1.31620 * 125.86491 * 354.75959 * 22 20 4 24 24 C 1.33097 * 109.09640 * 179.83750 * 23 22 20 25 25 C 1.35561 * 108.34774 * 0.43420 * 24 23 22 26 26 N 1.35396 * 107.16366 * 359.73730 * 25 24 23 27 27 H 0.97003 * 126.44097 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46884 * 59.99087 * 1 2 3 29 29 H 1.08991 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46750 * 299.99918 * 1 2 3 31 31 H 1.09005 * 109.46750 * 240.00082 * 2 1 3 32 32 H 1.08995 * 109.46974 * 120.01180 * 2 1 3 33 33 H 1.09000 * 109.46623 * 60.00428 * 3 2 1 34 34 H 1.09001 * 109.47130 * 300.00666 * 3 2 1 35 35 H 1.08998 * 109.46598 * 215.28832 * 5 4 3 36 36 H 1.09006 * 109.46892 * 335.28154 * 5 4 3 37 37 H 1.09000 * 109.46509 * 299.99443 * 6 5 4 38 38 H 1.09001 * 109.47248 * 59.99992 * 6 5 4 39 39 H 0.97007 * 119.99898 * 359.97438 * 7 6 5 40 40 H 1.08998 * 109.46908 * 300.00090 * 10 8 7 41 41 H 1.09001 * 109.47021 * 60.00153 * 10 8 7 42 42 H 0.97006 * 119.99628 * 179.97438 * 15 14 12 43 43 H 1.07998 * 125.82374 * 180.21207 * 24 23 22 44 44 H 1.08004 * 126.41890 * 179.77572 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2380 1.3322 -1.2631 6 6 4.6086 2.7306 -1.7613 7 7 5.3420 2.6204 -3.0247 8 6 5.7722 3.7322 -3.6533 9 8 5.5525 4.8239 -3.1729 10 6 6.5272 3.6188 -4.9526 11 16 6.9654 5.2731 -5.5422 12 6 7.8123 4.8536 -7.0292 13 1 7.9216 3.8178 -7.3146 14 6 8.3401 5.8543 -7.8333 15 7 8.9723 5.5410 -8.9444 16 14 8.1517 7.6460 -7.3393 17 1 9.3083 8.0527 -6.5014 18 1 8.1013 8.4928 -8.5581 19 1 6.8957 7.8167 -6.5657 20 6 4.1785 1.5436 1.1636 21 8 3.5743 1.5353 2.2189 22 6 5.6476 1.6645 1.1565 23 7 6.4224 1.5889 0.0953 24 6 7.6899 1.7470 0.4694 25 6 7.7198 1.9192 1.8137 26 7 6.4396 1.8684 2.2515 27 1 6.1407 1.9592 3.1699 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5140 0.8898 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 5.1460 0.7498 -1.1068 36 1 3.6114 0.8364 -2.0045 37 1 3.7005 3.3129 -1.9175 38 1 5.2352 3.2263 -1.0199 39 1 5.5181 1.7471 -3.4088 40 1 7.4354 3.0371 -4.7955 41 1 5.9014 3.1223 -5.6943 42 1 9.3408 6.2404 -9.5066 43 1 8.5484 1.7361 -0.1858 44 1 8.5998 2.0694 2.4215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759054309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:18 Heat of formation + Delta-G solvation = -32.246183 kcal Electronic energy + Delta-G solvation = -26807.193074 eV Core-core repulsion = 22886.211949 eV Total energy + Delta-G solvation = -3920.981125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.28268 -40.91487 -40.42247 -37.72957 -35.84450 -34.64249 -34.41020 -33.53782 -31.58732 -30.87821 -29.21529 -27.81322 -27.39906 -24.68501 -23.78439 -22.50989 -22.45284 -21.82178 -20.95226 -19.91562 -19.05020 -17.91347 -17.69811 -17.54634 -17.07505 -16.91085 -16.66584 -16.52362 -15.70915 -15.67352 -15.47732 -15.19109 -15.06978 -14.90733 -14.78201 -14.58224 -14.39669 -14.15331 -13.62673 -13.34850 -13.30117 -13.00510 -12.95818 -12.79214 -12.62229 -12.54027 -12.24535 -11.84780 -11.62035 -11.51288 -11.26704 -11.14473 -11.00997 -10.93085 -10.48607 -10.06774 -9.95263 -9.52242 -8.95553 -8.48732 -6.18584 0.27291 1.01715 1.32945 1.37193 1.50149 1.59912 1.60927 1.65260 2.16519 2.27347 2.28800 2.53317 2.77819 2.89578 3.14238 3.85512 3.89356 3.99971 4.02710 4.07135 4.15209 4.30630 4.35776 4.38441 4.47090 4.52792 4.54179 4.57145 4.67595 4.82851 4.86794 4.93379 5.11636 5.18284 5.21100 5.32686 5.44146 5.50192 5.68221 5.74065 6.06674 6.15035 6.17087 6.56073 6.65768 6.94139 6.96936 7.28635 8.63559 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.002481 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.247910 B =11281.001536 C =12553.745468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.110 3.890 4 N -0.583 5.583 5 C 0.102 3.898 6 C 0.126 3.874 7 N -0.697 5.697 8 C 0.537 3.463 9 O -0.569 6.569 10 C -0.108 4.108 11 S -0.180 6.180 12 C -0.525 4.525 13 H 0.064 0.936 14 C 0.045 3.955 15 N -0.917 5.917 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.238 1.238 20 C 0.603 3.397 21 O -0.569 6.569 22 C 0.105 3.895 23 N -0.441 5.441 24 C -0.054 4.054 25 C 0.005 3.995 26 N -0.520 5.520 27 H 0.438 0.562 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.419 0.581 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.276 0.724 43 H 0.192 0.808 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -15.123 23.630 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.011 4.011 4 N -0.313 5.313 5 C -0.021 4.021 6 C 0.000 4.000 7 N -0.351 5.351 8 C 0.322 3.678 9 O -0.448 6.448 10 C -0.258 4.258 11 S 0.046 5.954 12 C -0.673 4.673 13 H 0.082 0.918 14 C -0.160 4.160 15 N -0.555 5.555 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.185 1.185 19 H -0.162 1.162 20 C 0.390 3.610 21 O -0.448 6.448 22 C -0.154 4.154 23 N -0.164 5.164 24 C -0.207 4.207 25 C -0.135 4.135 26 N -0.123 5.123 27 H 0.278 0.722 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.209 0.791 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.208 -13.439 24.017 29.716 hybrid contribution 0.958 -0.584 0.197 1.140 sum -10.250 -14.023 24.215 29.800 Atomic orbital electron populations 1.21681 0.93936 1.02555 1.02378 1.21808 0.97104 0.95712 1.02346 1.21842 0.76702 0.98484 1.04110 1.47535 1.07442 1.70564 1.05719 1.22120 0.99502 0.95821 0.84625 1.21456 0.95138 0.98482 0.84902 1.45361 1.57299 1.08774 1.23694 1.19934 0.78448 0.84325 0.85094 1.90688 1.57881 1.28670 1.67545 1.23245 1.04026 1.00934 0.97637 1.84760 1.73158 1.10253 1.27187 1.22461 1.40511 0.96645 1.07663 0.91774 1.25545 0.93276 1.03268 0.93921 1.70017 1.36451 1.35524 1.13548 0.85884 0.81273 0.79960 0.79353 1.18771 1.18458 1.16166 1.16770 0.83836 0.76250 0.84141 1.90804 1.69501 1.53119 1.31376 1.22461 0.93625 1.15126 0.84197 1.70295 1.03265 1.15812 1.27061 1.23056 0.95100 1.08030 0.94514 1.23680 0.87708 1.04752 0.97343 1.42998 1.06976 1.51197 1.11103 0.72151 0.91519 0.91776 0.92852 0.90528 0.93221 0.90650 0.88231 0.86118 0.87092 0.93176 0.93306 0.74417 0.86700 0.86605 0.91432 0.79150 0.75635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.62 6.26 30.59 0.19 -1.43 16 3 C 0.11 1.62 5.40 86.38 0.47 2.09 16 4 N -0.58 -10.41 2.48 -825.72 -2.05 -12.46 16 5 C 0.10 1.58 5.11 86.38 0.44 2.03 16 6 C 0.13 2.81 5.42 86.38 0.47 3.28 16 7 N -0.70 -16.16 5.56 -463.06 -2.57 -18.73 16 8 C 0.54 18.34 7.85 87.66 0.69 19.03 16 9 O -0.57 -24.82 15.86 -3.02 -0.05 -24.87 16 10 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 11 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 12 C -0.53 -30.34 10.04 67.96 0.68 -29.66 16 13 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 14 C 0.05 2.64 5.50 84.86 0.47 3.11 16 15 N -0.92 -55.66 13.97 21.65 0.30 -55.35 16 16 Si 0.91 45.05 27.74 68.60 1.90 46.96 16 17 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 20 C 0.60 13.39 7.62 86.66 0.66 14.05 16 21 O -0.57 -15.05 16.65 -4.04 -0.07 -15.12 16 22 C 0.10 2.13 7.34 136.28 1.00 3.13 16 23 N -0.44 -8.85 6.22 -189.53 -1.18 -10.03 16 24 C -0.05 -0.89 11.85 83.88 0.99 0.10 16 25 C 0.01 0.06 12.00 83.52 1.00 1.06 16 26 N -0.52 -7.58 6.15 -188.02 -1.16 -8.74 16 27 H 0.44 4.64 8.96 -92.71 -0.83 3.81 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.33 7.35 -2.39 -0.02 1.31 16 34 H 0.10 1.16 8.11 -2.39 -0.02 1.14 16 35 H 0.12 1.97 5.60 -2.39 -0.01 1.96 16 36 H 0.11 1.11 8.03 -2.38 -0.02 1.09 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.37 6.59 -2.39 -0.02 1.36 16 39 H 0.42 6.67 8.47 -92.70 -0.79 5.89 16 40 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 41 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 42 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 43 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.23 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -81.80 385.29 1.68 -80.12 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.61 Total: 15.83 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 8.21 Total: 12.51 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -6.66 Total: -105.31 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.12 Total: -39.99 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -81.80 1.68 -80.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759054309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.875 kcal (2) G-P(sol) polarization free energy of solvation -81.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds