Wall clock time and date at job start Tue Mar 31 2020 23:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 N 1.46504 * 109.47273 * 185.00072 * 4 2 1 6 6 C 1.46504 * 120.00204 * 270.00527 * 5 4 2 7 7 C 1.34777 * 120.00161 * 90.00041 * 5 4 2 8 8 O 1.21287 * 119.99995 * 0.02562 * 7 5 4 9 9 C 1.50696 * 120.00222 * 180.02562 * 7 5 4 10 10 S 1.80997 * 109.47297 * 179.97438 * 9 7 5 11 11 C 1.76192 * 100.00201 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00319 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47356 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47104 * 120.00296 * 15 13 11 18 18 H 1.48500 * 109.47016 * 240.00149 * 15 13 11 19 19 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 20 20 C 1.46899 * 111.00029 * 275.00154 * 19 2 1 21 21 C 1.50703 * 109.47107 * 179.97438 * 20 19 2 22 22 C 1.38264 * 119.98454 * 269.72498 * 21 20 19 23 23 C 1.38231 * 120.05072 * 179.72379 * 22 21 20 24 24 C 1.38220 * 120.02185 * 0.54963 * 23 22 21 25 25 C 1.38441 * 119.97585 * 359.72572 * 24 23 22 26 26 F 1.35096 * 120.02644 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.99050 * 89.99730 * 21 20 19 28 28 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 31 31 H 1.08996 * 109.47740 * 304.99944 * 4 2 1 32 32 H 1.08998 * 109.47287 * 65.00497 * 4 2 1 33 33 H 1.08999 * 109.47052 * 89.99342 * 6 5 4 34 34 H 1.08992 * 109.47060 * 210.00279 * 6 5 4 35 35 H 1.08999 * 109.46555 * 329.99603 * 6 5 4 36 36 H 1.09000 * 109.47348 * 299.99927 * 9 7 5 37 37 H 1.08996 * 109.47103 * 59.99881 * 9 7 5 38 38 H 0.97000 * 120.00214 * 180.02562 * 14 13 11 39 39 H 1.00908 * 110.99583 * 38.95067 * 19 2 1 40 40 H 1.09002 * 109.47043 * 299.99792 * 20 19 2 41 41 H 1.09001 * 109.47354 * 59.99854 * 20 19 2 42 42 H 1.08006 * 119.97743 * 359.97438 * 22 21 20 43 43 H 1.07991 * 119.98959 * 180.27327 * 23 22 21 44 44 H 1.08000 * 120.01376 * 179.74163 * 24 23 22 45 45 H 1.08006 * 120.00743 * 359.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6115 8 8 3.3850 -2.7769 -0.1394 9 6 5.5776 -2.0067 -0.5507 10 16 6.0386 -3.5466 0.2811 11 6 7.7945 -3.4171 0.2134 12 1 8.2552 -2.5575 -0.2505 13 6 8.5858 -4.4200 0.7563 14 7 8.0245 -5.4680 1.3213 15 14 10.4474 -4.2830 0.6839 16 1 10.8246 -3.0192 0.0016 17 1 10.9978 -4.2838 2.0631 18 1 10.9996 -5.4370 -0.0701 19 7 2.0197 -0.6925 1.1995 20 6 2.0824 0.2226 2.3469 21 6 2.5873 -0.5218 3.5561 22 6 1.6935 -1.1472 4.4055 23 6 2.1555 -1.8352 5.5119 24 6 3.5111 -1.8890 5.7763 25 6 4.4066 -1.2584 4.9296 26 9 5.7318 -1.3108 5.1868 27 6 3.9429 -0.5743 3.8185 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 4.5400 0.9847 -0.9982 34 1 5.2733 -0.1926 -2.1137 35 1 3.8103 0.6987 -2.5963 36 1 5.9833 -2.0042 -1.5623 37 1 5.9805 -1.1596 0.0044 38 1 8.5775 -6.1687 1.7010 39 1 1.4494 -1.4979 1.4101 40 1 2.7588 1.0462 2.1182 41 1 1.0870 0.6163 2.5526 42 1 0.6337 -1.1016 4.2023 43 1 1.4568 -2.3270 6.1722 44 1 3.8716 -2.4231 6.6431 45 1 4.6407 -0.0823 3.1569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277759666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:50 Heat of formation + Delta-G solvation = -51.837257 kcal Electronic energy + Delta-G solvation = -27629.133024 eV Core-core repulsion = 23687.382405 eV Total energy + Delta-G solvation = -3941.750619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.57874 -39.49602 -38.97883 -36.92484 -34.77934 -32.61857 -32.33171 -30.48739 -29.80031 -29.01513 -27.11096 -25.56599 -25.29825 -24.82936 -22.63171 -21.32463 -21.07185 -19.03449 -17.54736 -17.21071 -16.45673 -16.26389 -16.08026 -15.84902 -15.45748 -15.34625 -15.14149 -14.72437 -14.62393 -14.00258 -13.86953 -13.70624 -13.16957 -13.05845 -12.95945 -12.91110 -12.67131 -12.49603 -12.35859 -12.17408 -11.97732 -11.89525 -11.69609 -11.66722 -11.42802 -11.02414 -10.99184 -10.90965 -10.79598 -10.67256 -9.68597 -9.04530 -8.98001 -8.88663 -8.58066 -8.45351 -8.08663 -8.04755 -6.36061 -6.12369 -3.80365 1.24630 1.34484 3.13459 3.27224 3.33214 3.37315 3.44320 3.60831 3.79147 4.28709 4.30165 4.42669 4.73576 4.76346 4.81736 4.97564 5.06630 5.10806 5.15564 5.22710 5.24362 5.24919 5.26843 5.41699 5.47045 5.52379 5.56033 5.62140 5.67808 5.73569 5.81490 5.87092 5.91690 6.03610 6.09189 6.15180 6.28081 6.29485 6.35784 6.54117 6.84274 7.00625 7.08906 7.47537 7.68702 7.83878 8.44596 8.91990 9.33282 10.95056 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.004496 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.508628 B = 6226.863241 C = 8712.574949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.075 0.925 4 C 0.130 3.870 5 N -0.616 5.616 6 C 0.084 3.916 7 C 0.546 3.454 8 O -0.505 6.505 9 C -0.147 4.147 10 S -0.058 6.058 11 C -0.532 4.532 12 H 0.070 0.930 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.915 3.085 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.661 5.661 20 C 0.103 3.897 21 C -0.053 4.053 22 C -0.129 4.129 23 C -0.093 4.093 24 C -0.156 4.156 25 C 0.108 3.892 26 F -0.136 7.136 27 C -0.123 4.123 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.266 0.734 39 H 0.349 0.651 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.828 15.328 0.927 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.093 0.907 4 C 0.006 3.994 5 N -0.352 5.352 6 C -0.060 4.060 7 C 0.334 3.666 8 O -0.378 6.378 9 C -0.298 4.298 10 S 0.168 5.832 11 C -0.681 4.681 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.741 3.259 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.293 5.293 20 C -0.026 4.026 21 C -0.053 4.053 22 C -0.148 4.148 23 C -0.111 4.111 24 C -0.175 4.175 25 C 0.088 3.912 26 F -0.114 7.114 27 C -0.142 4.142 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.169 0.831 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.096 13.926 1.548 21.340 hybrid contribution 1.435 1.259 -0.321 1.936 sum -14.661 15.185 1.227 21.143 Atomic orbital electron populations 1.22464 0.97094 1.02470 1.02041 1.22019 0.92249 0.98110 0.91971 0.90670 1.21371 0.80964 1.01577 0.95488 1.47565 1.05479 1.21758 1.60351 1.21688 0.95809 0.90800 0.97702 1.19939 0.89535 0.80652 0.76515 1.90632 1.64323 1.38864 1.43956 1.23523 0.94546 1.07060 1.04694 1.85352 1.05135 1.18539 1.74130 1.22915 0.91470 1.09564 1.44130 0.91145 1.24956 0.99311 0.94574 0.94651 1.70031 1.35616 1.08682 1.35997 0.86179 0.83579 0.78154 0.77966 1.19663 1.20615 1.20642 1.60433 1.58181 1.08588 1.02064 1.20858 0.98903 0.94585 0.88226 1.19524 0.92517 0.97859 0.95444 1.20998 0.99376 0.98999 0.95417 1.20885 0.94550 0.98297 0.97389 1.21141 0.93541 1.01896 1.00899 1.17723 0.77787 0.99534 0.96124 1.91536 1.31451 1.94682 1.93746 1.20994 0.96156 1.00771 0.96266 0.92033 0.92705 0.92040 0.90037 0.90986 0.93338 0.91003 0.91934 0.90022 0.89868 0.92396 0.83072 0.90503 0.94616 0.86055 0.85354 0.84989 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.16 37.15 0.34 -1.05 16 2 C 0.07 0.67 2.89 -67.72 -0.20 0.48 16 3 H 0.08 0.70 7.80 -51.93 -0.40 0.30 16 4 C 0.13 1.47 5.24 -4.04 -0.02 1.45 16 5 N -0.62 -8.60 2.78 -181.57 -0.50 -9.10 16 6 C 0.08 0.90 10.29 59.85 0.62 1.52 16 7 C 0.55 10.43 7.03 -10.99 -0.08 10.35 16 8 O -0.50 -11.25 14.59 5.55 0.08 -11.17 16 9 C -0.15 -3.12 4.71 36.00 0.17 -2.95 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.53 -15.60 9.50 30.94 0.29 -15.31 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 14 N -0.87 -26.83 13.22 55.49 0.73 -26.09 16 15 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 N -0.66 -8.25 4.51 -107.99 -0.49 -8.74 16 20 C 0.10 1.13 5.61 -4.98 -0.03 1.10 16 21 C -0.05 -0.68 5.39 -104.63 -0.56 -1.25 16 22 C -0.13 -1.49 9.70 -39.57 -0.38 -1.87 16 23 C -0.09 -1.08 10.04 -39.59 -0.40 -1.48 16 24 C -0.16 -2.13 10.03 -39.51 -0.40 -2.53 16 25 C 0.11 1.74 7.30 -39.42 -0.29 1.45 16 26 F -0.14 -2.47 17.27 2.25 0.04 -2.43 16 27 C -0.12 -1.88 9.68 -39.52 -0.38 -2.26 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 32 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.08 1.62 7.40 -51.92 -0.38 1.24 16 37 H 0.08 1.69 8.11 -51.92 -0.42 1.27 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.35 4.70 8.46 -39.29 -0.33 4.37 16 40 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 41 H 0.04 0.32 7.38 -51.93 -0.38 -0.06 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -35.35 392.89 -9.63 -44.98 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.77 Total: 3.73 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.41 Total: -10.28 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.26 Total: -43.94 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.35 -9.63 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277759666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.854 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds