Wall clock time and date at job start Tue Mar 31 2020 23:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 N 1.46504 * 109.47273 * 185.00072 * 4 2 1 6 6 C 1.46504 * 120.00204 * 270.00527 * 5 4 2 7 7 C 1.34777 * 120.00161 * 90.00041 * 5 4 2 8 8 O 1.21287 * 119.99995 * 0.02562 * 7 5 4 9 9 C 1.50696 * 120.00222 * 180.02562 * 7 5 4 10 10 S 1.80997 * 109.47297 * 179.97438 * 9 7 5 11 11 C 1.76192 * 100.00201 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00319 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47356 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47104 * 120.00296 * 15 13 11 18 18 H 1.48500 * 109.47016 * 240.00149 * 15 13 11 19 19 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 20 20 C 1.46899 * 111.00029 * 275.00154 * 19 2 1 21 21 C 1.50703 * 109.47107 * 179.97438 * 20 19 2 22 22 C 1.38264 * 119.98454 * 269.72498 * 21 20 19 23 23 C 1.38231 * 120.05072 * 179.72379 * 22 21 20 24 24 C 1.38220 * 120.02185 * 0.54963 * 23 22 21 25 25 C 1.38441 * 119.97585 * 359.72572 * 24 23 22 26 26 F 1.35096 * 120.02644 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.99050 * 89.99730 * 21 20 19 28 28 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 31 31 H 1.08996 * 109.47740 * 304.99944 * 4 2 1 32 32 H 1.08998 * 109.47287 * 65.00497 * 4 2 1 33 33 H 1.08999 * 109.47052 * 89.99342 * 6 5 4 34 34 H 1.08992 * 109.47060 * 210.00279 * 6 5 4 35 35 H 1.08999 * 109.46555 * 329.99603 * 6 5 4 36 36 H 1.09000 * 109.47348 * 299.99927 * 9 7 5 37 37 H 1.08996 * 109.47103 * 59.99881 * 9 7 5 38 38 H 0.97000 * 120.00214 * 180.02562 * 14 13 11 39 39 H 1.00908 * 110.99583 * 38.95067 * 19 2 1 40 40 H 1.09002 * 109.47043 * 299.99792 * 20 19 2 41 41 H 1.09001 * 109.47354 * 59.99854 * 20 19 2 42 42 H 1.08006 * 119.97743 * 359.97438 * 22 21 20 43 43 H 1.07991 * 119.98959 * 180.27327 * 23 22 21 44 44 H 1.08000 * 120.01376 * 179.74163 * 24 23 22 45 45 H 1.08006 * 120.00743 * 359.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6115 8 8 3.3850 -2.7769 -0.1394 9 6 5.5776 -2.0067 -0.5507 10 16 6.0386 -3.5466 0.2811 11 6 7.7945 -3.4171 0.2134 12 1 8.2552 -2.5575 -0.2505 13 6 8.5858 -4.4200 0.7563 14 7 8.0245 -5.4680 1.3213 15 14 10.4474 -4.2830 0.6839 16 1 10.8246 -3.0192 0.0016 17 1 10.9978 -4.2838 2.0631 18 1 10.9996 -5.4370 -0.0701 19 7 2.0197 -0.6925 1.1995 20 6 2.0824 0.2226 2.3469 21 6 2.5873 -0.5218 3.5561 22 6 1.6935 -1.1472 4.4055 23 6 2.1555 -1.8352 5.5119 24 6 3.5111 -1.8890 5.7763 25 6 4.4066 -1.2584 4.9296 26 9 5.7318 -1.3108 5.1868 27 6 3.9429 -0.5743 3.8185 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 4.5400 0.9847 -0.9982 34 1 5.2733 -0.1926 -2.1137 35 1 3.8103 0.6987 -2.5963 36 1 5.9833 -2.0042 -1.5623 37 1 5.9805 -1.1596 0.0044 38 1 8.5775 -6.1687 1.7010 39 1 1.4494 -1.4979 1.4101 40 1 2.7588 1.0462 2.1182 41 1 1.0870 0.6163 2.5526 42 1 0.6337 -1.1016 4.2023 43 1 1.4568 -2.3270 6.1722 44 1 3.8716 -2.4231 6.6431 45 1 4.6407 -0.0823 3.1569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277759666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:49 Heat of formation + Delta-G solvation = -74.132788 kcal Electronic energy + Delta-G solvation = -27630.099831 eV Core-core repulsion = 23687.382405 eV Total energy + Delta-G solvation = -3942.717426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.89176 -40.69261 -40.08278 -37.94324 -35.98114 -34.57329 -33.57192 -31.55192 -31.09835 -30.13552 -28.07753 -27.65951 -26.35492 -25.90924 -23.68357 -22.35032 -21.95518 -20.47789 -19.45063 -18.34762 -17.82152 -17.40452 -17.12652 -17.01984 -16.87733 -16.64394 -16.61157 -16.19585 -15.92486 -15.50059 -15.02329 -14.75597 -14.52242 -14.38531 -14.13134 -14.05934 -13.81514 -13.54806 -13.36467 -13.18494 -13.12536 -13.02281 -12.95323 -12.90718 -12.76129 -12.61049 -12.56305 -12.33669 -11.84388 -11.76952 -11.66342 -11.15026 -10.57264 -10.20234 -9.92470 -9.65732 -9.51983 -9.01082 -8.60460 -8.33754 -6.09028 0.19570 0.28570 1.28519 1.38750 1.47410 1.60211 1.93241 2.26601 2.38265 2.59528 3.00012 3.31408 3.33833 3.45255 3.74833 3.86645 3.92488 4.02406 4.11147 4.24517 4.28743 4.31845 4.33209 4.40301 4.47831 4.53351 4.56545 4.62527 4.64710 4.76129 4.88543 4.95953 4.98596 5.01649 5.08790 5.12428 5.21395 5.32913 5.36241 5.41541 5.53173 5.81123 5.97052 6.20143 6.25771 6.53104 6.56296 7.07656 7.49947 8.75619 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.004496 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.508628 B = 6226.863241 C = 8712.574949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.088 0.912 4 C 0.125 3.875 5 N -0.603 5.603 6 C 0.076 3.924 7 C 0.545 3.455 8 O -0.546 6.546 9 C -0.122 4.122 10 S -0.142 6.142 11 C -0.546 4.546 12 H 0.076 0.924 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.993 3.007 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.270 1.270 19 N -0.686 5.686 20 C 0.110 3.890 21 C -0.057 4.057 22 C -0.123 4.123 23 C -0.088 4.088 24 C -0.165 4.165 25 C 0.066 3.934 26 F -0.159 7.159 27 C -0.145 4.145 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.270 0.730 39 H 0.341 0.659 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.382 17.603 -0.199 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.038 4.038 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.336 5.336 6 C -0.066 4.066 7 C 0.332 3.668 8 O -0.422 6.422 9 C -0.274 4.274 10 S 0.085 5.915 11 C -0.694 4.694 12 H 0.094 0.906 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.815 3.185 16 H -0.181 1.181 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.318 5.318 20 C -0.018 4.018 21 C -0.058 4.058 22 C -0.141 4.141 23 C -0.106 4.106 24 C -0.184 4.184 25 C 0.047 3.953 26 F -0.138 7.138 27 C -0.165 4.165 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.174 0.826 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.671 16.264 0.387 24.019 hybrid contribution 1.784 0.642 -0.037 1.897 sum -15.886 16.906 0.350 23.202 Atomic orbital electron populations 1.22352 0.94996 1.02296 1.03391 1.22015 0.93822 0.97928 0.90067 0.89397 1.21676 0.78719 1.01300 0.98082 1.47512 1.07149 1.20605 1.58363 1.21958 0.95591 0.89918 0.99180 1.19572 0.88267 0.81845 0.77144 1.90616 1.64578 1.40800 1.46224 1.23353 0.96941 1.02840 1.04255 1.85462 1.05969 1.24026 1.76033 1.23226 0.91789 1.09998 1.44366 0.90570 1.26068 1.05122 0.93924 0.93847 1.70189 1.37856 1.09679 1.36985 0.84987 0.76291 0.78922 0.78274 1.18135 1.20093 1.19539 1.60396 1.58941 1.09074 1.03358 1.20835 1.00150 0.93869 0.86967 1.19846 0.91583 0.97852 0.96471 1.21441 1.00845 0.97355 0.94472 1.21351 0.94036 0.97483 0.97736 1.21420 0.94347 1.01700 1.00950 1.18203 0.77333 1.01901 0.97903 1.91459 1.33201 1.95115 1.94059 1.21061 0.97406 1.01747 0.96267 0.92974 0.91806 0.90188 0.92346 0.87091 0.92334 0.91809 0.88040 0.88644 0.89302 0.92110 0.84027 0.90623 0.91777 0.82640 0.81773 0.83829 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.16 71.98 0.66 -1.39 16 2 C 0.07 1.23 2.89 44.91 0.13 1.36 16 3 H 0.09 1.30 7.80 -2.39 -0.02 1.28 16 4 C 0.13 2.52 5.24 86.38 0.45 2.97 16 5 N -0.60 -15.79 2.78 -846.76 -2.35 -18.14 16 6 C 0.08 1.41 10.29 127.77 1.31 2.72 16 7 C 0.55 20.95 7.03 87.66 0.62 21.56 16 8 O -0.55 -25.08 14.59 -3.05 -0.04 -25.13 16 9 C -0.12 -5.28 4.71 71.23 0.34 -4.94 16 10 S -0.14 -8.28 20.57 -56.49 -1.16 -9.44 16 11 C -0.55 -32.78 9.50 67.96 0.65 -32.14 16 12 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 13 C 0.02 0.89 5.49 84.86 0.47 1.36 16 14 N -0.91 -58.06 13.22 21.65 0.29 -57.77 16 15 Si 0.99 45.72 29.55 68.60 2.03 47.75 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 N -0.69 -16.32 4.51 -495.58 -2.24 -18.55 16 20 C 0.11 2.23 5.61 85.56 0.48 2.71 16 21 C -0.06 -1.45 5.39 -19.87 -0.11 -1.56 16 22 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 23 C -0.09 -1.92 10.04 22.26 0.22 -1.70 16 24 C -0.17 -4.62 10.03 22.31 0.22 -4.39 16 25 C 0.07 2.27 7.30 22.37 0.16 2.44 16 26 F -0.16 -6.36 17.27 44.97 0.78 -5.58 16 27 C -0.15 -4.73 9.68 22.31 0.22 -4.51 16 28 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.06 0.68 7.45 -2.39 -0.02 0.66 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.49 7.42 -2.39 -0.02 1.47 16 32 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.31 6.44 -2.39 -0.02 1.29 16 35 H 0.10 1.14 7.89 -2.39 -0.02 1.13 16 36 H 0.10 3.80 7.40 -2.39 -0.02 3.78 16 37 H 0.09 3.68 8.11 -2.40 -0.02 3.66 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.34 8.94 8.46 -89.69 -0.76 8.18 16 40 H 0.08 1.54 8.00 -2.39 -0.02 1.52 16 41 H 0.06 0.94 7.38 -2.39 -0.02 0.92 16 42 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.16 2.35 8.06 -2.92 -0.02 2.32 16 44 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 45 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -82.52 392.89 3.57 -78.96 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.24 Total: 25.79 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 6.04 Total: -17.89 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -4.30 Total: -94.46 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.13 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.78 Total: -5.58 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -82.52 3.57 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277759666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.824 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds