Wall clock time and date at job start Tue Mar 31 2020 23:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 C 1.34778 * 119.99771 * 274.99826 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.34944 * 126.04071 * 124.99999 * 8 7 5 10 10 C 1.35313 * 107.74847 * 179.97438 * 9 8 7 11 11 C 1.39872 * 107.91970 * 359.97438 * 10 9 8 12 12 N 1.30836 * 108.20327 * 359.74139 * 11 10 9 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 H 1.08992 * 109.47399 * 300.00166 * 13 2 1 15 15 C 1.53002 * 109.47233 * 179.97438 * 13 2 1 16 16 N 1.46499 * 109.46840 * 60.00500 * 13 2 1 17 17 C 1.34778 * 119.99771 * 204.99940 * 16 13 2 18 18 O 1.21279 * 120.00041 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.47206 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99964 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00386 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99921 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00170 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46808 * 89.99765 * 25 23 21 27 27 H 1.48498 * 109.47134 * 210.00175 * 25 23 21 28 28 H 1.48497 * 109.46920 * 330.00260 * 25 23 21 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 0.96998 * 120.00630 * 95.00428 * 4 2 1 33 33 H 1.08999 * 109.47030 * 300.00189 * 7 5 4 34 34 H 1.08995 * 109.47091 * 59.99897 * 7 5 4 35 35 H 1.07999 * 126.12527 * 359.95751 * 9 8 7 36 36 H 1.07997 * 126.04288 * 179.97438 * 10 9 8 37 37 H 1.08000 * 125.89463 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47075 * 300.00932 * 15 13 2 39 39 H 1.09000 * 109.46986 * 60.00203 * 15 13 2 40 40 H 1.08993 * 109.47662 * 180.02562 * 15 13 2 41 41 H 0.97006 * 120.00568 * 24.99713 * 16 13 2 42 42 H 1.08995 * 109.47091 * 300.00103 * 19 17 16 43 43 H 1.08999 * 109.47030 * 59.99811 * 19 17 16 44 44 H 0.96993 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 7 2.6984 0.2127 4.7091 9 6 2.0995 0.0512 5.9076 10 6 2.3859 1.1377 6.6615 11 6 3.1878 1.9922 5.8979 12 7 3.3806 1.4360 4.7294 13 6 2.0401 -0.7213 -1.2492 14 1 1.6768 -1.7489 -1.2492 15 6 3.5701 -0.7208 -1.2495 16 7 1.5518 -0.0307 -2.4454 17 6 1.4231 -0.7031 -3.6063 18 8 1.7119 -1.8797 -3.6609 19 6 0.9203 0.0072 -4.8367 20 16 0.8603 -1.1556 -6.2224 21 6 0.2571 -0.0904 -7.4898 22 1 0.0469 0.9458 -7.2696 23 6 0.0521 -0.5830 -8.7712 24 7 0.3078 -1.8461 -9.0395 25 14 -0.5880 0.5461 -10.1146 26 1 0.5572 1.1850 -10.8115 27 1 -1.3819 -0.2446 -11.0892 28 1 -1.4480 1.5955 -9.5111 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 1.9776 -1.5508 3.8325 34 1 3.6490 -1.1203 3.3980 35 1 1.4989 -0.7937 6.2106 36 1 2.0540 1.3140 7.6740 37 1 3.5829 2.9447 6.2188 38 1 3.9330 0.3070 -1.2496 39 1 3.9338 -1.2343 -0.3595 40 1 3.9335 -1.2342 -2.1396 41 1 1.3211 0.9105 -2.4019 42 1 -0.0790 0.3990 -4.6471 43 1 1.5925 0.8295 -5.0817 44 1 0.1642 -2.1904 -9.9348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280177154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:12 Heat of formation + Delta-G solvation = 9.459012 kcal Electronic energy + Delta-G solvation = -26048.881739 eV Core-core repulsion = 22129.709087 eV Total energy + Delta-G solvation = -3919.172652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53808 -40.31381 -39.29773 -36.90112 -34.20568 -33.72028 -32.45152 -31.38644 -30.46051 -30.20016 -28.59417 -27.68172 -25.50978 -24.17040 -22.29237 -21.44251 -21.08721 -20.86134 -20.23204 -18.17725 -17.74480 -17.66603 -16.73103 -16.19873 -15.87432 -15.65266 -15.09984 -14.82957 -14.81867 -14.72457 -14.13823 -14.07687 -13.89200 -13.71826 -13.61609 -13.26423 -13.15892 -12.88248 -12.71160 -12.49628 -12.47904 -12.05196 -11.87198 -11.59107 -11.08173 -11.04831 -10.96471 -10.94841 -10.77832 -10.50283 -9.84331 -9.69875 -9.61013 -9.46076 -9.09540 -8.99860 -8.93722 -8.27379 -6.52980 -6.24135 -3.94873 1.50742 1.96672 2.12423 2.57498 2.58499 3.01125 3.07085 3.21051 3.27062 3.31680 3.68533 4.02196 4.13107 4.18303 4.29626 4.43084 4.48500 4.67143 4.73155 4.88373 5.06547 5.11310 5.20537 5.21745 5.26037 5.42046 5.42354 5.47199 5.60081 5.62324 5.67486 5.81267 5.85003 5.94155 6.03383 6.08865 6.11406 6.30727 6.53459 6.55931 6.98544 7.39162 7.57415 7.60832 7.73770 8.33008 8.52739 9.21486 10.83284 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038532 B = 0.001657 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.503655 B =16898.438861 C =17166.690434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.094 0.906 4 N -0.719 5.719 5 C 0.502 3.498 6 O -0.506 6.506 7 C 0.116 3.884 8 N -0.365 5.365 9 C 0.051 3.949 10 C -0.270 4.270 11 C 0.040 3.960 12 N -0.267 5.267 13 C 0.139 3.861 14 H 0.093 0.907 15 C -0.164 4.164 16 N -0.731 5.731 17 C 0.536 3.464 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.174 0.826 36 H 0.148 0.852 37 H 0.183 0.817 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 2.217 30.480 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.112 0.888 4 N -0.373 5.373 5 C 0.285 3.715 6 O -0.379 6.379 7 C -0.010 4.010 8 N -0.148 5.148 9 C -0.094 4.094 10 C -0.300 4.300 11 C -0.147 4.147 12 N -0.087 5.087 13 C 0.032 3.968 14 H 0.111 0.889 15 C -0.222 4.222 16 N -0.386 5.386 17 C 0.323 3.677 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.191 0.809 36 H 0.165 0.835 37 H 0.199 0.801 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.234 0.766 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.817 0.979 29.028 29.441 hybrid contribution -1.192 1.935 -0.008 2.273 sum 3.625 2.914 29.020 29.390 Atomic orbital electron populations 1.22171 0.94381 1.02743 1.02841 1.21154 0.94660 0.97643 0.83177 0.88808 1.45842 1.68075 1.14161 1.09268 1.20491 0.78687 0.87877 0.84434 1.90811 1.47667 1.15203 1.84230 1.21455 1.04964 0.90281 0.84294 1.48066 1.39949 1.16326 1.10458 1.22543 0.99581 1.01103 0.86189 1.21511 1.09354 0.96440 1.02657 1.23949 0.98998 1.00444 0.91344 1.77517 1.17081 0.93532 1.20597 1.20996 0.94421 0.97730 0.83610 0.88880 1.22194 0.94876 1.02477 1.02652 1.45950 1.69559 1.13987 1.09108 1.20304 0.76655 0.87176 0.83591 1.90697 1.48228 1.15747 1.84314 1.23539 1.03746 1.04937 0.98261 1.85370 1.86355 1.12834 0.98723 1.22871 1.51012 0.98210 0.96358 0.90899 1.24988 0.95061 0.95531 0.97947 1.70012 1.45568 1.13208 1.21505 0.86169 0.78854 0.79959 0.80533 1.20253 1.20736 1.19690 0.92054 0.92067 0.90956 0.76265 0.85637 0.86653 0.80929 0.83469 0.80055 0.92355 0.91997 0.91247 0.76631 0.89144 0.89134 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.33 37.16 0.35 -1.12 16 2 C 0.14 1.20 2.21 -67.93 -0.15 1.05 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 N -0.72 -4.75 4.38 -53.80 -0.24 -4.98 16 5 C 0.50 4.29 7.82 -10.98 -0.09 4.21 16 6 O -0.51 -6.86 15.38 5.56 0.09 -6.78 16 7 C 0.12 0.62 6.99 -5.19 -0.04 0.58 16 8 N -0.37 -3.17 3.39 -62.55 -0.21 -3.39 16 9 C 0.05 0.34 11.45 -17.23 -0.20 0.14 16 10 C -0.27 -1.99 10.80 -40.01 -0.43 -2.43 16 11 C 0.04 0.36 12.03 -17.36 -0.21 0.15 16 12 N -0.27 -3.10 11.66 30.62 0.36 -2.74 16 13 C 0.14 1.41 2.21 -67.93 -0.15 1.26 16 14 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 15 C -0.16 -1.63 9.33 37.16 0.35 -1.28 16 16 N -0.73 -8.92 4.38 -53.81 -0.24 -9.15 16 17 C 0.54 9.36 7.81 -10.98 -0.09 9.27 16 18 O -0.52 -10.95 15.52 5.56 0.09 -10.86 16 19 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 25 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 32 H 0.40 1.52 8.39 -40.82 -0.34 1.18 16 33 H 0.13 0.17 8.07 -51.93 -0.42 -0.25 16 34 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.40 3.94 8.39 -40.82 -0.34 3.60 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -39.57 392.69 -7.41 -46.98 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.44 Total: 1.48 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.23 Total: -3.76 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.41 Total: -45.44 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.57 -7.41 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280177154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.440 kcal (2) G-P(sol) polarization free energy of solvation -39.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds