Wall clock time and date at job start Tue Mar 31 2020 23:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 C 1.34778 * 119.99771 * 274.99826 * 4 2 1 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.34944 * 126.04071 * 124.99999 * 8 7 5 10 10 C 1.35313 * 107.74847 * 179.97438 * 9 8 7 11 11 C 1.39872 * 107.91970 * 359.97438 * 10 9 8 12 12 N 1.30836 * 108.20327 * 359.74139 * 11 10 9 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 H 1.08992 * 109.47399 * 300.00166 * 13 2 1 15 15 C 1.53002 * 109.47233 * 179.97438 * 13 2 1 16 16 N 1.46499 * 109.46840 * 60.00500 * 13 2 1 17 17 C 1.34778 * 119.99771 * 204.99940 * 16 13 2 18 18 O 1.21279 * 120.00041 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.47206 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99964 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00386 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99921 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00170 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46808 * 89.99765 * 25 23 21 27 27 H 1.48498 * 109.47134 * 210.00175 * 25 23 21 28 28 H 1.48497 * 109.46920 * 330.00260 * 25 23 21 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 0.96998 * 120.00630 * 95.00428 * 4 2 1 33 33 H 1.08999 * 109.47030 * 300.00189 * 7 5 4 34 34 H 1.08995 * 109.47091 * 59.99897 * 7 5 4 35 35 H 1.07999 * 126.12527 * 359.95751 * 9 8 7 36 36 H 1.07997 * 126.04288 * 179.97438 * 10 9 8 37 37 H 1.08000 * 125.89463 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47075 * 300.00932 * 15 13 2 39 39 H 1.09000 * 109.46986 * 60.00203 * 15 13 2 40 40 H 1.08993 * 109.47662 * 180.02562 * 15 13 2 41 41 H 0.97006 * 120.00568 * 24.99713 * 16 13 2 42 42 H 1.08995 * 109.47091 * 300.00103 * 19 17 16 43 43 H 1.08999 * 109.47030 * 59.99811 * 19 17 16 44 44 H 0.96993 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 7 2.6984 0.2127 4.7091 9 6 2.0995 0.0512 5.9076 10 6 2.3859 1.1377 6.6615 11 6 3.1878 1.9922 5.8979 12 7 3.3806 1.4360 4.7294 13 6 2.0401 -0.7213 -1.2492 14 1 1.6768 -1.7489 -1.2492 15 6 3.5701 -0.7208 -1.2495 16 7 1.5518 -0.0307 -2.4454 17 6 1.4231 -0.7031 -3.6063 18 8 1.7119 -1.8797 -3.6609 19 6 0.9203 0.0072 -4.8367 20 16 0.8603 -1.1556 -6.2224 21 6 0.2571 -0.0904 -7.4898 22 1 0.0469 0.9458 -7.2696 23 6 0.0521 -0.5830 -8.7712 24 7 0.3078 -1.8461 -9.0395 25 14 -0.5880 0.5461 -10.1146 26 1 0.5572 1.1850 -10.8115 27 1 -1.3819 -0.2446 -11.0892 28 1 -1.4480 1.5955 -9.5111 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 1.9776 -1.5508 3.8325 34 1 3.6490 -1.1203 3.3980 35 1 1.4989 -0.7937 6.2106 36 1 2.0540 1.3140 7.6740 37 1 3.5829 2.9447 6.2188 38 1 3.9330 0.3070 -1.2496 39 1 3.9338 -1.2343 -0.3595 40 1 3.9335 -1.2342 -2.1396 41 1 1.3211 0.9105 -2.4019 42 1 -0.0790 0.3990 -4.6471 43 1 1.5925 0.8295 -5.0817 44 1 0.1642 -2.1904 -9.9348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280177154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:11 Heat of formation + Delta-G solvation = -20.576956 kcal Electronic energy + Delta-G solvation = -26050.184196 eV Core-core repulsion = 22129.709087 eV Total energy + Delta-G solvation = -3920.475109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08749 -41.19255 -40.40419 -37.89184 -35.17753 -34.58547 -34.29512 -32.46157 -31.20247 -30.85467 -29.91464 -28.23924 -27.65267 -24.99003 -23.09592 -21.99602 -21.83710 -21.76298 -21.16078 -19.88448 -18.62111 -18.31258 -17.91552 -17.10631 -16.88137 -16.76881 -16.49425 -16.43018 -15.76932 -15.53436 -15.35805 -14.97114 -14.81230 -14.52549 -14.46701 -14.36290 -14.27058 -13.80136 -13.63730 -13.42773 -13.24839 -13.16566 -13.06357 -12.90141 -12.72683 -12.61192 -12.51674 -11.83103 -11.71124 -11.54344 -11.22278 -11.14609 -10.95939 -10.38532 -10.29602 -10.27991 -10.05962 -9.47703 -8.65859 -8.35171 -6.12479 0.97144 1.25168 1.41774 1.43333 1.50747 1.52766 1.58227 1.60890 1.97223 2.02636 2.26875 2.47160 2.99139 3.30765 3.38938 3.61274 3.78116 3.86025 3.96011 4.08002 4.09930 4.19580 4.27392 4.29996 4.38459 4.45563 4.52000 4.67334 4.69590 4.74001 4.83452 4.94482 4.95143 5.17854 5.18902 5.23417 5.30225 5.41955 5.48489 5.75557 6.12433 6.19552 6.42911 6.47971 6.82188 7.06625 7.15730 7.21484 8.73893 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038532 B = 0.001657 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.503655 B =16898.438861 C =17166.690434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.705 5.705 5 C 0.501 3.499 6 O -0.561 6.561 7 C 0.113 3.887 8 N -0.374 5.374 9 C 0.055 3.945 10 C -0.287 4.287 11 C 0.025 3.975 12 N -0.324 5.324 13 C 0.143 3.857 14 H 0.088 0.912 15 C -0.159 4.159 16 N -0.708 5.708 17 C 0.542 3.458 18 O -0.558 6.558 19 C -0.133 4.133 20 S -0.145 6.145 21 C -0.549 4.549 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.420 0.580 33 H 0.172 0.828 34 H 0.138 0.862 35 H 0.215 0.785 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.414 0.586 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 2.575 32.068 32.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.100 0.900 4 N -0.360 5.360 5 C 0.287 3.713 6 O -0.438 6.438 7 C -0.012 4.012 8 N -0.157 5.157 9 C -0.089 4.089 10 C -0.316 4.316 11 C -0.162 4.162 12 N -0.145 5.145 13 C 0.037 3.963 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.363 5.363 17 C 0.328 3.672 18 O -0.436 6.436 19 C -0.284 4.284 20 S 0.082 5.918 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.183 1.183 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.258 0.742 33 H 0.190 0.810 34 H 0.155 0.845 35 H 0.231 0.769 36 H 0.185 0.815 37 H 0.212 0.788 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.255 1.340 30.656 30.979 hybrid contribution -0.993 1.827 -0.355 2.109 sum 3.262 3.167 30.301 30.640 Atomic orbital electron populations 1.22123 0.94378 1.02864 1.02338 1.20865 0.94462 0.96960 0.83171 0.89976 1.45687 1.67240 1.14847 1.08218 1.21100 0.77508 0.87292 0.85416 1.90797 1.50198 1.17693 1.85109 1.21831 1.07186 0.90146 0.82006 1.48324 1.39729 1.15947 1.11714 1.23256 0.98587 1.01848 0.85248 1.21878 1.09445 0.96543 1.03714 1.24365 0.99249 1.01273 0.91275 1.77418 1.19411 0.95644 1.22058 1.21087 0.94723 0.97391 0.83080 0.89369 1.22150 0.94297 1.02575 1.02716 1.45699 1.67803 1.14531 1.08233 1.19920 0.76521 0.86515 0.84275 1.90689 1.50416 1.17452 1.85000 1.23394 1.05537 1.03304 0.96184 1.85496 1.86704 1.17041 1.02556 1.23217 1.50934 0.98541 0.96950 0.90044 1.26084 0.95067 0.97147 1.00662 1.70169 1.46847 1.15381 1.22239 0.84986 0.78431 0.77812 0.76963 1.19384 1.20239 1.18332 0.91562 0.92889 0.91179 0.74250 0.81032 0.84471 0.76866 0.81547 0.78843 0.92214 0.89258 0.93875 0.74923 0.87233 0.87449 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.33 71.98 0.67 -1.95 16 2 C 0.15 2.37 2.21 44.99 0.10 2.47 16 3 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 4 N -0.71 -7.68 4.38 -442.53 -1.94 -9.62 16 5 C 0.50 7.66 7.82 87.66 0.69 8.34 16 6 O -0.56 -14.98 15.38 -3.03 -0.05 -15.03 16 7 C 0.11 0.86 6.99 85.63 0.60 1.46 16 8 N -0.37 -5.81 3.39 -351.80 -1.19 -7.00 16 9 C 0.06 0.61 11.45 83.54 0.96 1.56 16 10 C -0.29 -3.83 10.80 21.99 0.24 -3.59 16 11 C 0.02 0.45 12.03 85.24 1.02 1.47 16 12 N -0.32 -7.47 11.66 -57.02 -0.66 -8.14 16 13 C 0.14 2.69 2.21 44.99 0.10 2.79 16 14 H 0.09 1.85 7.58 -2.39 -0.02 1.84 16 15 C -0.16 -2.93 9.33 71.98 0.67 -2.26 16 16 N -0.71 -16.32 4.38 -442.54 -1.94 -18.26 16 17 C 0.54 18.61 7.81 87.66 0.68 19.30 16 18 O -0.56 -23.94 15.52 -3.03 -0.05 -23.99 16 19 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 20 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 21 C -0.55 -31.05 9.50 67.96 0.65 -30.41 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.02 0.87 5.49 84.86 0.47 1.33 16 24 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 25 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 32 H 0.42 1.83 8.39 -92.71 -0.78 1.05 16 33 H 0.17 -0.35 8.07 -2.39 -0.02 -0.37 16 34 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.14 7.45 -2.39 -0.02 1.12 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.41 7.37 8.39 -92.70 -0.78 6.60 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -90.61 392.69 2.07 -88.54 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.53 Total: 16.33 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 7.28 Total: -4.13 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -5.45 Total: -98.08 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.09 Total: -39.01 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -90.61 2.07 -88.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280177154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.960 kcal (2) G-P(sol) polarization free energy of solvation -90.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds