Wall clock time and date at job start Tue Mar 31 2020 23:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47488 * 2 1 4 4 N 1.46902 * 109.47101 * 120.00061 * 2 1 3 5 5 C 1.46896 * 111.00080 * 274.99810 * 4 2 1 6 6 C 1.52995 * 109.47093 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46830 * 294.99770 * 6 5 4 8 8 C 1.53000 * 109.47187 * 175.00278 * 6 5 4 9 9 N 1.46496 * 109.47630 * 54.99918 * 6 5 4 10 10 C 1.34777 * 120.00258 * 205.00405 * 9 6 5 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 6 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 6 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46950 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47177 * 240.00017 * 18 16 14 22 22 C 1.50701 * 109.46808 * 239.99988 * 2 1 3 23 23 C 1.38271 * 119.98667 * 100.00408 * 22 2 1 24 24 C 1.38223 * 120.05104 * 180.02562 * 23 22 2 25 25 C 1.38221 * 120.02572 * 359.97438 * 24 23 22 26 26 C 1.38441 * 119.97267 * 0.02562 * 25 24 23 27 27 F 1.35108 * 120.02167 * 180.02562 * 26 25 24 28 28 C 1.38175 * 119.98911 * 279.72629 * 22 2 1 29 29 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 299.99863 * 1 2 3 31 31 H 1.08996 * 109.47389 * 59.99896 * 1 2 3 32 32 H 1.00904 * 110.99986 * 151.04347 * 4 2 1 33 33 H 1.08994 * 109.47322 * 59.99980 * 5 4 2 34 34 H 1.09001 * 109.46773 * 299.99862 * 5 4 2 35 35 H 1.09006 * 109.47229 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.46821 * 299.99498 * 8 6 5 37 37 H 1.08992 * 109.47302 * 59.99702 * 8 6 5 38 38 H 0.96999 * 119.99694 * 24.99795 * 9 6 5 39 39 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 40 40 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 41 41 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 42 42 H 1.07998 * 119.97631 * 0.02562 * 23 22 2 43 43 H 1.07998 * 119.98488 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.00843 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00955 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5329 3.5741 7 1 1.8754 -1.3003 3.8564 8 6 2.7801 0.4459 4.7355 9 7 3.8808 -1.1623 3.2579 10 6 4.2844 -2.2511 3.9420 11 8 3.5843 -2.7096 4.8198 12 6 5.6056 -2.8987 3.6162 13 16 5.8612 -4.3261 4.6996 14 6 7.4309 -4.8750 4.1171 15 1 7.9245 -4.3459 3.3154 16 6 8.0324 -5.9880 4.6880 17 7 7.4301 -6.6337 5.6641 18 14 9.6963 -6.5704 4.0700 19 1 10.1568 -5.6800 2.9744 20 1 10.6785 -6.5333 5.1833 21 1 9.5767 -7.9605 3.5616 22 6 2.0322 -0.7104 -1.2305 23 6 2.4587 0.0199 -2.3244 24 6 2.9191 -0.6304 -3.4539 25 6 2.9542 -2.0117 -3.4908 26 6 2.5275 -2.7439 -2.3961 27 9 2.5618 -4.0941 -2.4309 28 6 2.0718 -2.0912 -1.2630 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9173 -1.1206 1.0287 33 1 1.0872 0.6163 2.5525 34 1 2.7589 1.0461 2.1181 35 1 3.1466 -0.0923 5.6098 36 1 3.5009 1.2133 4.4532 37 1 1.8244 0.9141 4.9709 38 1 4.4408 -0.7954 2.5560 39 1 5.6028 -3.2270 2.5768 40 1 6.4102 -2.1792 3.7679 41 1 7.8506 -7.4113 6.0633 42 1 2.4320 1.0991 -2.2963 43 1 3.2524 -0.0589 -4.3076 44 1 3.3144 -2.5194 -4.3733 45 1 1.7424 -2.6613 -0.4069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321790447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:12 Heat of formation + Delta-G solvation = -65.164423 kcal Electronic energy + Delta-G solvation = -26473.536655 eV Core-core repulsion = 22531.208126 eV Total energy + Delta-G solvation = -3942.328529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.05166 -39.95843 -39.31638 -37.21046 -35.11022 -32.40998 -32.10405 -30.92013 -30.84031 -29.31457 -28.51532 -25.75247 -25.45727 -23.81096 -22.82323 -21.49126 -20.83987 -20.26829 -18.03117 -17.63584 -16.80948 -16.52074 -16.41752 -16.13143 -15.78623 -15.60436 -15.21159 -14.78896 -14.72759 -14.52445 -14.14582 -14.08561 -13.43435 -13.35400 -13.28340 -12.97772 -12.76691 -12.70982 -12.51580 -12.32008 -12.28346 -12.10839 -11.96154 -11.72056 -11.46489 -11.16189 -11.05428 -10.99793 -10.91940 -10.73256 -9.78266 -9.34339 -9.30904 -9.05862 -9.00109 -8.90285 -8.77044 -8.20417 -6.47119 -6.19773 -3.89776 0.79263 0.88537 3.05410 3.14048 3.21918 3.23011 3.29658 3.34308 3.66623 3.79590 3.92007 4.22327 4.23236 4.46005 4.64223 4.73187 4.79918 4.85586 4.93567 5.04096 5.10269 5.15462 5.18855 5.23879 5.30554 5.39165 5.41306 5.52575 5.58475 5.60357 5.69016 5.71454 5.83178 5.91325 5.92542 5.93973 6.06412 6.07248 6.15947 6.18890 6.56955 6.65942 6.71864 7.02512 7.61821 7.71832 8.37406 8.66040 9.25770 10.87704 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.002902 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.412411 B = 9647.009887 C =11954.377461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.125 3.875 3 H 0.056 0.944 4 N -0.682 5.682 5 C 0.054 3.946 6 C 0.145 3.855 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.735 5.735 10 C 0.535 3.465 11 O -0.514 6.514 12 C -0.154 4.154 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.065 4.065 23 C -0.126 4.126 24 C -0.092 4.092 25 C -0.156 4.156 26 C 0.101 3.899 27 F -0.136 7.136 28 C -0.134 4.134 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.348 0.652 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.392 0.608 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.268 0.732 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 19.150 -17.290 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.074 0.926 4 N -0.315 5.315 5 C -0.076 4.076 6 C 0.040 3.960 7 H 0.115 0.885 8 C -0.222 4.222 9 N -0.389 5.389 10 C 0.321 3.679 11 O -0.388 6.388 12 C -0.305 4.305 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.744 3.256 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.065 4.065 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.175 4.175 26 C 0.082 3.918 27 F -0.115 7.115 28 C -0.153 4.153 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.225 0.775 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.253 17.926 -15.508 27.658 hybrid contribution 3.015 0.588 -2.057 3.696 sum -11.238 18.514 -17.565 27.885 Atomic orbital electron populations 1.21797 0.93156 1.03019 1.01453 1.20462 0.96416 0.95097 0.86462 0.92617 1.60524 1.34402 1.32884 1.03717 1.22336 1.01400 0.93537 0.90329 1.20920 0.86227 0.95539 0.93338 0.88546 1.22163 1.01807 0.99121 0.99098 1.46053 1.21627 1.31072 1.40177 1.20249 0.87416 0.79112 0.81086 1.90699 1.55329 1.62283 1.30482 1.23537 0.96278 1.04517 1.06133 1.85394 1.25821 1.26908 1.45131 1.22909 1.05151 1.16667 1.23568 0.90944 1.24988 0.98406 0.95467 0.94724 1.70024 1.38079 1.18894 1.23279 0.86129 0.82143 0.78622 0.78673 1.19640 1.20589 1.20548 1.19782 0.98065 0.92902 0.95761 1.21080 1.00067 1.00138 0.93210 1.20963 0.98378 0.93389 0.98267 1.21209 1.02934 0.94869 0.98460 1.17778 1.01248 0.77177 0.95612 1.91543 1.94188 1.28918 1.96848 1.21135 1.01404 0.94807 0.97967 0.91544 0.92126 0.92420 0.83218 0.89470 0.94649 0.91353 0.92743 0.91829 0.77471 0.89335 0.89420 0.92254 0.85507 0.85019 0.84796 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.39 37.16 0.35 -0.60 16 2 C 0.12 0.91 2.82 -68.86 -0.19 0.72 16 3 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 4 N -0.68 -5.96 5.68 -107.96 -0.61 -6.57 16 5 C 0.05 0.43 5.10 -3.83 -0.02 0.41 16 6 C 0.15 1.61 2.88 -67.94 -0.20 1.41 16 7 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 8 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 9 N -0.73 -9.35 4.35 -53.81 -0.23 -9.58 16 10 C 0.54 9.82 7.81 -10.98 -0.09 9.73 16 11 O -0.51 -11.55 15.53 5.56 0.09 -11.46 16 12 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 13 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 14 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 15 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 18 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.06 -0.53 4.72 -104.63 -0.49 -1.02 16 23 C -0.13 -0.87 9.67 -39.57 -0.38 -1.26 16 24 C -0.09 -0.63 10.04 -39.59 -0.40 -1.03 16 25 C -0.16 -1.33 10.03 -39.51 -0.40 -1.72 16 26 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 27 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 28 C -0.13 -1.35 8.98 -39.52 -0.35 -1.70 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.39 7.45 -51.93 -0.39 0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.35 3.30 6.83 -39.29 -0.27 3.04 16 33 H 0.09 0.62 7.44 -51.93 -0.39 0.23 16 34 H 0.04 0.25 8.06 -51.93 -0.42 -0.17 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.39 3.95 8.15 -40.82 -0.33 3.61 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.13 0.61 8.04 -52.49 -0.42 0.19 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.15 1.58 7.71 -52.49 -0.40 1.18 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -34.41 395.00 -9.72 -44.13 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.76 Total: 3.63 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.69 Total: -11.55 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.11 Total: -41.79 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.41 -9.72 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321790447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.034 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds