Wall clock time and date at job start Tue Mar 31 2020 23:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47488 * 2 1 4 4 N 1.46902 * 109.47101 * 120.00061 * 2 1 3 5 5 C 1.46896 * 111.00080 * 274.99810 * 4 2 1 6 6 C 1.52995 * 109.47093 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46830 * 294.99770 * 6 5 4 8 8 C 1.53000 * 109.47187 * 175.00278 * 6 5 4 9 9 N 1.46496 * 109.47630 * 54.99918 * 6 5 4 10 10 C 1.34777 * 120.00258 * 205.00405 * 9 6 5 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 6 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 6 13 13 S 1.81003 * 109.46853 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99846 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99637 * 180.02562 * 14 13 12 17 17 N 1.31628 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99570 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47213 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46950 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47177 * 240.00017 * 18 16 14 22 22 C 1.50701 * 109.46808 * 239.99988 * 2 1 3 23 23 C 1.38271 * 119.98667 * 100.00408 * 22 2 1 24 24 C 1.38223 * 120.05104 * 180.02562 * 23 22 2 25 25 C 1.38221 * 120.02572 * 359.97438 * 24 23 22 26 26 C 1.38441 * 119.97267 * 0.02562 * 25 24 23 27 27 F 1.35108 * 120.02167 * 180.02562 * 26 25 24 28 28 C 1.38175 * 119.98911 * 279.72629 * 22 2 1 29 29 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 299.99863 * 1 2 3 31 31 H 1.08996 * 109.47389 * 59.99896 * 1 2 3 32 32 H 1.00904 * 110.99986 * 151.04347 * 4 2 1 33 33 H 1.08994 * 109.47322 * 59.99980 * 5 4 2 34 34 H 1.09001 * 109.46773 * 299.99862 * 5 4 2 35 35 H 1.09006 * 109.47229 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.46821 * 299.99498 * 8 6 5 37 37 H 1.08992 * 109.47302 * 59.99702 * 8 6 5 38 38 H 0.96999 * 119.99694 * 24.99795 * 9 6 5 39 39 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 40 40 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 41 41 H 0.96995 * 120.00407 * 180.02562 * 17 16 14 42 42 H 1.07998 * 119.97631 * 0.02562 * 23 22 2 43 43 H 1.07998 * 119.98488 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.00843 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00955 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5329 3.5741 7 1 1.8754 -1.3003 3.8564 8 6 2.7801 0.4459 4.7355 9 7 3.8808 -1.1623 3.2579 10 6 4.2844 -2.2511 3.9420 11 8 3.5843 -2.7096 4.8198 12 6 5.6056 -2.8987 3.6162 13 16 5.8612 -4.3261 4.6996 14 6 7.4309 -4.8750 4.1171 15 1 7.9245 -4.3459 3.3154 16 6 8.0324 -5.9880 4.6880 17 7 7.4301 -6.6337 5.6641 18 14 9.6963 -6.5704 4.0700 19 1 10.1568 -5.6800 2.9744 20 1 10.6785 -6.5333 5.1833 21 1 9.5767 -7.9605 3.5616 22 6 2.0322 -0.7104 -1.2305 23 6 2.4587 0.0199 -2.3244 24 6 2.9191 -0.6304 -3.4539 25 6 2.9542 -2.0117 -3.4908 26 6 2.5275 -2.7439 -2.3961 27 9 2.5618 -4.0941 -2.4309 28 6 2.0718 -2.0912 -1.2630 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9173 -1.1206 1.0287 33 1 1.0872 0.6163 2.5525 34 1 2.7589 1.0461 2.1181 35 1 3.1466 -0.0923 5.6098 36 1 3.5009 1.2133 4.4532 37 1 1.8244 0.9141 4.9709 38 1 4.4408 -0.7954 2.5560 39 1 5.6028 -3.2270 2.5768 40 1 6.4102 -2.1792 3.7679 41 1 7.8506 -7.4113 6.0633 42 1 2.4320 1.0991 -2.2963 43 1 3.2524 -0.0589 -4.3076 44 1 3.3144 -2.5194 -4.3733 45 1 1.7424 -2.6613 -0.4069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321790447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:11 Heat of formation + Delta-G solvation = -87.977356 kcal Electronic energy + Delta-G solvation = -26474.525898 eV Core-core repulsion = 22531.208126 eV Total energy + Delta-G solvation = -3943.317772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.90777 -40.88255 -40.34653 -38.08492 -36.06770 -34.59307 -33.16923 -31.78109 -31.52719 -30.01292 -29.84982 -27.66772 -26.43810 -24.45319 -23.51894 -22.54093 -21.51612 -21.42771 -19.88023 -18.56172 -17.93206 -17.43755 -17.27547 -17.06300 -16.89022 -16.63393 -16.43915 -16.41450 -15.93449 -15.73122 -15.16182 -14.78134 -14.69584 -14.59667 -14.15069 -14.11894 -13.96457 -13.59188 -13.32864 -13.20095 -13.16034 -13.05056 -12.92122 -12.89441 -12.71147 -12.60933 -12.56068 -12.14444 -11.93905 -11.70692 -11.61143 -11.16606 -10.89172 -10.27394 -10.10974 -9.93231 -9.65841 -9.38661 -8.66713 -8.35496 -6.13188 0.16073 0.25100 1.26832 1.40300 1.46640 1.57777 1.65908 2.25402 2.31417 2.60071 2.98603 3.07300 3.26069 3.32625 3.62257 3.84170 3.89737 4.03332 4.10400 4.20265 4.26213 4.28385 4.32896 4.36365 4.48466 4.49551 4.53334 4.67368 4.71597 4.79041 4.82257 4.94863 5.03755 5.10107 5.12656 5.19308 5.29442 5.35691 5.39328 5.41037 5.46924 5.56973 5.93868 6.10424 6.19136 6.33615 6.52014 7.05863 7.29188 8.74013 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.002902 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.412411 B = 9647.009887 C =11954.377461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.129 3.871 3 H 0.081 0.919 4 N -0.700 5.700 5 C 0.065 3.935 6 C 0.144 3.856 7 H 0.064 0.936 8 C -0.157 4.157 9 N -0.707 5.707 10 C 0.537 3.463 11 O -0.563 6.563 12 C -0.130 4.130 13 S -0.151 6.151 14 C -0.546 4.546 15 H 0.081 0.919 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.066 4.066 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.161 4.161 26 C 0.066 3.934 27 F -0.158 7.158 28 C -0.149 4.149 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.145 0.855 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 22.725 -19.844 32.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.021 3.979 3 H 0.098 0.902 4 N -0.333 5.333 5 C -0.064 4.064 6 C 0.039 3.961 7 H 0.082 0.918 8 C -0.216 4.216 9 N -0.361 5.361 10 C 0.323 3.677 11 O -0.441 6.441 12 C -0.281 4.281 13 S 0.076 5.924 14 C -0.694 4.694 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.067 4.067 23 C -0.136 4.136 24 C -0.105 4.105 25 C -0.180 4.180 26 C 0.047 3.953 27 F -0.137 7.137 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.246 0.754 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.176 0.824 43 H 0.181 0.819 44 H 0.163 0.837 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.320 21.559 -18.103 31.144 hybrid contribution 2.613 -0.391 -1.324 2.955 sum -10.707 21.168 -19.427 30.661 Atomic orbital electron populations 1.21792 0.93087 1.01928 1.02465 1.20510 0.96357 0.95816 0.85258 0.90163 1.60505 1.34205 1.33849 1.04717 1.22271 1.02633 0.93221 0.88305 1.21062 0.84308 0.95067 0.95637 0.91778 1.22102 1.03543 0.98846 0.97093 1.45780 1.22279 1.28983 1.39045 1.19965 0.86490 0.80203 0.81065 1.90689 1.56437 1.64090 1.32899 1.23375 0.98240 1.01688 1.04807 1.85572 1.26674 1.31540 1.48567 1.23232 1.05187 1.17152 1.23796 0.90055 1.26130 1.02903 0.95443 0.94701 1.70187 1.40231 1.19549 1.24804 0.84912 0.76408 0.78184 0.78474 1.18053 1.19778 1.19976 1.19936 0.97960 0.91981 0.96814 1.21460 0.98273 1.01632 0.92269 1.21369 0.97144 0.92652 0.99289 1.21452 1.02591 0.95865 0.98050 1.18165 1.03484 0.76551 0.97075 1.91477 1.94623 1.30579 1.97042 1.21075 1.02499 0.95903 0.97333 0.93724 0.91406 0.91088 0.83909 0.87915 0.92100 0.94933 0.90731 0.89494 0.75361 0.87717 0.87376 0.91994 0.82370 0.81870 0.83726 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.39 71.98 0.68 -0.91 16 2 C 0.13 1.52 2.82 44.17 0.12 1.64 16 3 H 0.08 0.60 7.66 -2.39 -0.02 0.58 16 4 N -0.70 -10.94 5.68 -495.47 -2.81 -13.76 16 5 C 0.06 0.84 5.10 86.30 0.44 1.28 16 6 C 0.14 3.01 2.88 44.99 0.13 3.14 16 7 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 8 C -0.16 -2.99 9.48 71.98 0.68 -2.31 16 9 N -0.71 -17.18 4.35 -442.54 -1.93 -19.11 16 10 C 0.54 19.92 7.81 87.66 0.68 20.61 16 11 O -0.56 -26.45 15.53 -3.03 -0.05 -26.50 16 12 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 13 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 14 C -0.55 -31.75 9.50 67.96 0.65 -31.10 16 15 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.75 5.49 84.86 0.47 1.21 16 17 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 18 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C -0.07 -0.95 4.72 -19.87 -0.09 -1.04 16 23 C -0.12 -1.20 9.67 22.27 0.22 -0.98 16 24 C -0.09 -0.92 10.04 22.26 0.22 -0.69 16 25 C -0.16 -2.56 10.03 22.31 0.22 -2.33 16 26 C 0.07 1.45 7.30 22.38 0.16 1.62 16 27 F -0.16 -4.29 17.27 44.97 0.78 -3.52 16 28 C -0.15 -3.04 8.98 22.31 0.20 -2.84 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.70 7.45 -2.39 -0.02 0.68 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.34 5.98 6.83 -89.69 -0.61 5.37 16 33 H 0.10 1.08 7.44 -2.39 -0.02 1.07 16 34 H 0.06 0.53 8.06 -2.39 -0.02 0.51 16 35 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 7.21 8.15 -92.71 -0.76 6.46 16 39 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.16 0.64 8.04 -2.91 -0.02 0.61 16 43 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.13 2.97 7.71 -2.91 -0.02 2.95 16 Total: -1.00 -80.31 395.00 2.00 -78.31 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.36 Total: 21.96 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.22 Total: -17.51 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -4.45 Total: -89.42 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -80.31 2.00 -78.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321790447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.666 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds