Wall clock time and date at job start Tue Mar 31 2020 23:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46503 * 109.47121 * 184.99876 * 4 2 1 6 6 C 1.46501 * 119.99916 * 270.00007 * 5 4 2 7 7 C 1.34769 * 119.99742 * 89.99671 * 5 4 2 8 8 O 1.21279 * 120.00698 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99776 * 179.97438 * 7 5 4 10 10 N 1.46500 * 109.47051 * 179.97438 * 9 7 5 11 11 C 1.36888 * 126.39363 * 90.00426 * 10 9 7 12 12 C 1.34677 * 106.81485 * 179.97438 * 11 10 9 13 13 N 1.34122 * 108.02036 * 0.02562 * 12 11 10 14 14 C 1.30508 * 109.25966 * 359.71930 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.08993 * 109.47213 * 89.99738 * 6 5 4 34 34 H 1.08999 * 109.47015 * 210.00222 * 6 5 4 35 35 H 1.09003 * 109.46840 * 329.99477 * 6 5 4 36 36 H 1.08998 * 109.47003 * 300.00553 * 9 7 5 37 37 H 1.09002 * 109.47168 * 60.00483 * 9 7 5 38 38 H 1.07995 * 126.59013 * 359.96266 * 11 10 9 39 39 H 1.07998 * 125.98598 * 180.02562 * 12 11 10 40 40 H 1.07992 * 125.65385 * 180.28852 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8262 -1.1908 6 6 4.3343 0.2343 -1.7613 7 6 4.0757 -1.8985 -0.6119 8 8 3.3852 -2.7767 -0.1399 9 6 5.5777 -2.0069 -0.5521 10 7 5.9509 -3.2534 0.1212 11 6 6.1587 -4.4679 -0.4751 12 6 6.4821 -5.3329 0.5052 13 7 6.4715 -4.6650 1.6682 14 6 6.1596 -3.4175 1.4453 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 4.5400 0.9850 -0.9983 34 1 5.2734 -0.1922 -2.1139 35 1 3.8102 0.6992 -2.5965 36 1 5.9827 -2.0047 -1.5640 37 1 5.9813 -1.1599 0.0026 38 1 6.0784 -4.6897 -1.5290 39 1 6.7100 -6.3808 0.3771 40 1 6.0794 -2.6449 2.1956 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337273175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:36 Heat of formation + Delta-G solvation = 3.231907 kcal Electronic energy + Delta-G solvation = -27703.507571 eV Core-core repulsion = 23784.064891 eV Total energy + Delta-G solvation = -3919.442680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20537 -40.53746 -39.03570 -36.60427 -34.96750 -34.06404 -32.38632 -31.55376 -29.62515 -28.88775 -28.41845 -27.71084 -25.79428 -25.43402 -22.17228 -21.44349 -21.27072 -20.23144 -19.90266 -18.04454 -17.76384 -17.64576 -16.63651 -16.43732 -16.32829 -15.44296 -14.99414 -14.76629 -14.73679 -14.51976 -14.14908 -14.02035 -13.78734 -13.73099 -13.35504 -13.31007 -13.23878 -13.10206 -12.84299 -12.68337 -12.50304 -12.28124 -12.00415 -11.83349 -11.27907 -10.99602 -10.98469 -10.71811 -10.66010 -10.02816 -9.78399 -9.68755 -9.39848 -9.21030 -9.01657 -8.82523 -8.57880 -8.21335 -6.46944 -6.17728 -3.88316 1.77476 2.00405 2.31957 2.70660 3.08008 3.12523 3.17478 3.29142 3.32112 3.37660 3.76149 3.87084 4.15846 4.25466 4.44782 4.51831 4.55066 4.66086 4.73942 4.77309 4.92224 5.03226 5.11784 5.17747 5.21249 5.26190 5.33014 5.37726 5.54179 5.57206 5.69261 5.83204 5.92214 5.94326 6.08526 6.16957 6.20216 6.61292 6.68195 6.76662 7.02671 7.55472 7.64786 7.83062 8.03288 8.40202 8.66128 9.28189 10.89594 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.003926 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.734584 B = 7130.279910 C = 9674.097739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.088 0.912 4 C 0.107 3.893 5 N -0.609 5.609 6 C 0.070 3.930 7 C 0.501 3.499 8 O -0.517 6.517 9 C 0.088 3.912 10 N -0.449 5.449 11 C -0.054 4.054 12 C -0.027 4.027 13 N -0.491 5.491 14 C 0.201 3.799 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.522 6.522 18 C -0.151 4.151 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.870 5.870 24 Si 0.917 3.083 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.205 0.795 41 H 0.405 0.595 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.625 -4.616 -26.787 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.106 0.894 4 C -0.016 4.016 5 N -0.343 5.343 6 C -0.073 4.073 7 C 0.287 3.713 8 O -0.392 6.392 9 C -0.039 4.039 10 N -0.132 5.132 11 C -0.185 4.185 12 C -0.174 4.174 13 N -0.208 5.208 14 C -0.082 4.082 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.396 6.396 18 C -0.302 4.302 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.743 3.257 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.187 0.813 39 H 0.185 0.815 40 H 0.222 0.778 41 H 0.243 0.757 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.926 -3.228 -25.621 25.988 hybrid contribution 0.553 -1.993 -0.108 2.071 sum 3.479 -5.221 -25.728 26.482 Atomic orbital electron populations 1.22138 0.94711 1.02369 1.02944 1.21277 0.94463 0.97762 0.84423 0.89352 1.21963 0.78830 1.02857 0.97946 1.47767 1.07152 1.21097 1.58266 1.21970 0.95180 0.90731 0.99372 1.20769 0.90546 0.81794 0.78223 1.90735 1.64031 1.39154 1.45324 1.21709 0.93434 0.87571 1.01149 1.45039 1.51476 1.08262 1.08441 1.22589 1.10726 0.85203 1.00003 1.22270 1.06967 0.99949 0.88234 1.70348 1.19732 1.03201 1.27502 1.25138 1.02900 0.96518 0.83626 1.46344 1.68929 1.14786 1.09090 1.20323 0.76824 0.87172 0.83883 1.90678 1.48602 1.15811 1.84554 1.23510 1.03484 1.04788 0.98383 1.85298 1.86632 1.12809 0.98536 1.22845 1.50995 0.98210 0.96237 0.90934 1.24969 0.95029 0.95512 0.97899 1.70011 1.45717 1.13264 1.21504 0.86244 0.79485 0.80063 0.79894 1.19802 1.20848 1.19897 0.92339 0.91180 0.91798 0.89120 0.88704 0.91500 0.90930 0.90198 0.86155 0.85590 0.81284 0.81486 0.77820 0.75659 0.89382 0.89732 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.13 1.40 2.88 -67.93 -0.20 1.20 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 4 C 0.11 0.80 5.19 -4.04 -0.02 0.78 16 5 N -0.61 -4.28 2.77 -181.57 -0.50 -4.78 16 6 C 0.07 0.26 10.29 59.85 0.62 0.87 16 7 C 0.50 4.57 7.04 -10.99 -0.08 4.49 16 8 O -0.52 -6.80 13.75 5.56 0.08 -6.72 16 9 C 0.09 0.59 5.18 -5.19 -0.03 0.56 16 10 N -0.45 -4.59 2.24 -119.86 -0.27 -4.85 16 11 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 12 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 13 N -0.49 -7.43 11.25 -14.67 -0.16 -7.60 16 14 C 0.20 2.61 12.56 -90.37 -1.14 1.48 16 15 N -0.73 -10.58 4.48 -53.80 -0.24 -10.82 16 16 C 0.53 10.17 7.81 -10.98 -0.09 10.09 16 17 O -0.52 -11.64 15.53 5.55 0.09 -11.56 16 18 C -0.15 -3.22 6.16 36.01 0.22 -2.99 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 21 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 22 C 0.08 2.18 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 24 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 32 H 0.09 0.43 7.89 -51.93 -0.41 0.02 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.10 6.44 -51.93 -0.33 -0.24 16 35 H 0.08 0.17 7.89 -51.93 -0.41 -0.24 16 36 H 0.12 0.38 7.40 -51.93 -0.38 0.00 16 37 H 0.13 0.64 8.11 -51.93 -0.42 0.22 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.21 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.41 5.88 5.83 -40.82 -0.24 5.64 16 42 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 43 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -39.61 387.41 -8.56 -48.17 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.33 Total: 4.28 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.56 Total: 0.67 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.44 Total: -53.80 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.61 -8.56 -48.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337273175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.403 kcal (2) G-P(sol) polarization free energy of solvation -39.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds