Wall clock time and date at job start Tue Mar 31 2020 23:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46503 * 109.47121 * 184.99876 * 4 2 1 6 6 C 1.46501 * 119.99916 * 270.00007 * 5 4 2 7 7 C 1.34769 * 119.99742 * 89.99671 * 5 4 2 8 8 O 1.21279 * 120.00698 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99776 * 179.97438 * 7 5 4 10 10 N 1.46500 * 109.47051 * 179.97438 * 9 7 5 11 11 C 1.36888 * 126.39363 * 90.00426 * 10 9 7 12 12 C 1.34677 * 106.81485 * 179.97438 * 11 10 9 13 13 N 1.34122 * 108.02036 * 0.02562 * 12 11 10 14 14 C 1.30508 * 109.25966 * 359.71930 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.08993 * 109.47213 * 89.99738 * 6 5 4 34 34 H 1.08999 * 109.47015 * 210.00222 * 6 5 4 35 35 H 1.09003 * 109.46840 * 329.99477 * 6 5 4 36 36 H 1.08998 * 109.47003 * 300.00553 * 9 7 5 37 37 H 1.09002 * 109.47168 * 60.00483 * 9 7 5 38 38 H 1.07995 * 126.59013 * 359.96266 * 11 10 9 39 39 H 1.07998 * 125.98598 * 180.02562 * 12 11 10 40 40 H 1.07992 * 125.65385 * 180.28852 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8262 -1.1908 6 6 4.3343 0.2343 -1.7613 7 6 4.0757 -1.8985 -0.6119 8 8 3.3852 -2.7767 -0.1399 9 6 5.5777 -2.0069 -0.5521 10 7 5.9509 -3.2534 0.1212 11 6 6.1587 -4.4679 -0.4751 12 6 6.4821 -5.3329 0.5052 13 7 6.4715 -4.6650 1.6682 14 6 6.1596 -3.4175 1.4453 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 4.5400 0.9850 -0.9983 34 1 5.2734 -0.1922 -2.1139 35 1 3.8102 0.6992 -2.5965 36 1 5.9827 -2.0047 -1.5640 37 1 5.9813 -1.1599 0.0026 38 1 6.0784 -4.6897 -1.5290 39 1 6.7100 -6.3808 0.3771 40 1 6.0794 -2.6449 2.1956 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337273175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:35 Heat of formation + Delta-G solvation = -24.050276 kcal Electronic energy + Delta-G solvation = -27704.690615 eV Core-core repulsion = 23784.064891 eV Total energy + Delta-G solvation = -3920.625724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.01714 -41.37731 -40.33873 -37.47874 -35.87838 -34.88432 -34.61031 -32.81198 -30.47208 -30.17039 -29.38892 -28.15626 -27.67803 -26.42943 -23.18876 -22.29329 -22.16057 -21.52200 -20.57548 -19.86563 -18.63076 -18.37674 -17.87639 -17.56493 -17.09832 -16.90103 -16.41559 -16.36932 -15.96845 -15.59552 -15.25590 -14.91269 -14.76986 -14.67854 -14.51574 -14.43546 -14.09012 -13.96752 -13.85424 -13.43580 -13.36979 -13.26339 -13.19345 -12.99223 -12.90468 -12.71902 -12.60269 -12.17156 -11.76684 -11.45782 -11.15879 -10.97235 -10.94735 -10.49527 -10.34558 -10.19829 -9.75286 -9.41859 -8.69572 -8.37383 -6.15285 1.00372 1.23588 1.34943 1.41333 1.42869 1.54366 1.55793 1.67416 2.08205 2.24428 2.25467 2.32496 2.96616 3.28451 3.34499 3.68681 3.77078 3.87171 3.93571 3.97920 4.05603 4.07079 4.16289 4.22371 4.36089 4.41475 4.47147 4.58115 4.65507 4.68329 4.74879 4.77102 4.96689 4.99708 5.19548 5.27618 5.36500 5.39220 5.55336 5.84135 6.09918 6.17197 6.27071 6.43609 6.94990 7.04315 7.15750 7.20134 8.71516 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.003926 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.734584 B = 7130.279910 C = 9674.097739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.079 0.921 4 C 0.114 3.886 5 N -0.605 5.605 6 C 0.062 3.938 7 C 0.494 3.506 8 O -0.565 6.565 9 C 0.085 3.915 10 N -0.443 5.443 11 C -0.034 4.034 12 C -0.062 4.062 13 N -0.538 5.538 14 C 0.176 3.824 15 N -0.712 5.712 16 C 0.536 3.464 17 O -0.558 6.558 18 C -0.131 4.131 19 S -0.131 6.131 20 C -0.551 4.551 21 H 0.075 0.925 22 C 0.021 3.979 23 N -0.908 5.908 24 Si 0.992 3.008 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.208 0.792 39 H 0.181 0.819 40 H 0.205 0.795 41 H 0.408 0.592 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -5.282 -29.759 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.097 0.903 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.079 4.079 7 C 0.282 3.718 8 O -0.444 6.444 9 C -0.040 4.040 10 N -0.125 5.125 11 C -0.167 4.167 12 C -0.208 4.208 13 N -0.257 5.257 14 C -0.107 4.107 15 N -0.369 5.369 16 C 0.321 3.679 17 O -0.436 6.436 18 C -0.282 4.282 19 S 0.096 5.904 20 C -0.699 4.699 21 H 0.093 0.907 22 C -0.185 4.185 23 N -0.544 5.544 24 Si 0.814 3.186 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.191 1.191 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.183 0.817 37 H 0.160 0.840 38 H 0.225 0.775 39 H 0.198 0.802 40 H 0.221 0.779 41 H 0.247 0.753 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.650 -3.869 -28.663 29.153 hybrid contribution 0.281 -1.768 0.643 1.902 sum 3.931 -5.637 -28.020 28.851 Atomic orbital electron populations 1.22097 0.94122 1.02608 1.02898 1.21619 0.95022 0.97472 0.84272 0.90282 1.21961 0.79250 1.02546 0.97187 1.47888 1.07277 1.21153 1.57337 1.22261 0.96332 0.89766 0.99575 1.21217 0.91412 0.81649 0.77546 1.90720 1.65159 1.41024 1.47510 1.22083 0.91960 0.86478 1.03471 1.45161 1.50238 1.09511 1.07602 1.23152 1.07921 0.84443 1.01191 1.22685 1.08701 1.01198 0.88219 1.70250 1.21198 1.04595 1.29640 1.25135 1.04170 0.96202 0.85153 1.46252 1.67161 1.14708 1.08744 1.19911 0.76871 0.86584 0.84505 1.90665 1.50628 1.17202 1.85140 1.23352 1.04595 1.03171 0.97072 1.85346 1.86919 1.16340 1.01753 1.23142 1.51372 0.98358 0.97033 0.90692 1.26020 0.94866 0.97150 1.00425 1.70151 1.46660 1.15276 1.22330 0.85094 0.79108 0.77856 0.76542 1.18775 1.19795 1.19060 0.91929 0.94777 0.88278 0.89846 0.84546 0.92655 0.87993 0.87956 0.81684 0.84017 0.77519 0.80208 0.77879 0.75293 0.89012 0.88423 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.48 71.98 0.68 -2.41 16 2 C 0.12 2.48 2.88 44.99 0.13 2.61 16 3 H 0.08 1.82 7.58 -2.38 -0.02 1.81 16 4 C 0.11 1.34 5.19 86.38 0.45 1.79 16 5 N -0.60 -6.47 2.77 -846.76 -2.35 -8.82 16 6 C 0.06 0.19 10.29 127.77 1.31 1.51 16 7 C 0.49 7.74 7.04 87.66 0.62 8.36 16 8 O -0.57 -14.06 13.75 -3.03 -0.04 -14.10 16 9 C 0.09 0.85 5.18 85.63 0.44 1.30 16 10 N -0.44 -8.25 2.24 -533.13 -1.19 -9.45 16 11 C -0.03 -0.62 11.58 83.09 0.96 0.35 16 12 C -0.06 -1.48 11.87 83.53 0.99 -0.49 16 13 N -0.54 -16.68 11.25 -200.31 -2.25 -18.94 16 14 C 0.18 4.62 12.56 180.26 2.26 6.88 16 15 N -0.71 -20.22 4.48 -442.52 -1.98 -22.20 16 16 C 0.54 20.84 7.81 87.66 0.68 21.52 16 17 O -0.56 -25.63 15.53 -3.04 -0.05 -25.68 16 18 C -0.13 -5.70 6.16 71.24 0.44 -5.26 16 19 S -0.13 -7.45 20.57 -56.49 -1.16 -8.61 16 20 C -0.55 -32.78 9.50 67.95 0.65 -32.13 16 21 H 0.07 4.26 7.80 -2.91 -0.02 4.24 16 22 C 0.02 1.21 5.49 84.86 0.47 1.68 16 23 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 24 Si 0.99 45.35 29.55 68.60 2.03 47.38 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.20 7.42 -2.39 -0.02 1.18 16 32 H 0.14 0.55 7.89 -2.39 -0.02 0.53 16 33 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.10 -0.27 6.44 -2.39 -0.02 -0.28 16 35 H 0.10 -0.08 7.89 -2.39 -0.02 -0.10 16 36 H 0.17 0.16 7.40 -2.39 -0.02 0.14 16 37 H 0.14 1.01 8.11 -2.39 -0.02 0.99 16 38 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.20 4.98 8.06 -2.91 -0.02 4.96 16 41 H 0.41 11.61 5.83 -92.71 -0.54 11.07 16 42 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -91.56 387.41 3.85 -87.71 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.47 Total: 23.16 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 10.09 Total: 5.69 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -7.49 Total: -115.55 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.09 Total: -39.78 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -91.56 3.85 -87.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337273175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.663 kcal (2) G-P(sol) polarization free energy of solvation -91.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds