Wall clock time and date at job start Tue Mar 31 2020 23:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 N 1.46504 * 109.47085 * 240.00081 * 2 1 3 5 5 C 1.36935 * 119.99728 * 84.99805 * 4 2 1 6 6 H 1.08000 * 120.00136 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99865 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47181 * 120.00094 * 9 7 5 12 12 H 1.48497 * 109.47024 * 240.00181 * 9 7 5 13 13 C 1.53001 * 109.47247 * 120.00127 * 2 1 3 14 14 H 1.08994 * 109.51310 * 174.89695 * 13 2 1 15 15 C 1.53290 * 109.51359 * 295.00460 * 13 2 1 16 16 N 1.47151 * 108.38704 * 172.27544 * 15 13 2 17 17 C 1.34778 * 120.98212 * 129.43820 * 16 15 13 18 18 O 1.21575 * 119.99855 * 355.07586 * 17 16 15 19 19 C 1.47702 * 120.00105 * 175.07835 * 17 16 15 20 20 C 1.39687 * 120.15009 * 316.07155 * 19 17 16 21 21 C 1.37848 * 119.91911 * 179.76808 * 20 19 17 22 22 C 1.38437 * 120.24257 * 0.49244 * 21 20 19 23 23 C 1.38379 * 120.31776 * 359.78123 * 22 21 20 24 24 F 1.35102 * 119.97066 * 179.97438 * 23 22 21 25 25 C 1.38548 * 120.07111 * 359.96076 * 23 22 21 26 26 F 1.35094 * 120.12536 * 180.02562 * 25 23 22 27 27 C 1.47148 * 118.03794 * 309.46263 * 16 15 13 28 28 C 1.53303 * 108.38275 * 50.53187 * 27 16 15 29 29 O 1.42961 * 109.55183 * 54.77347 * 13 2 1 30 30 H 1.08998 * 109.47307 * 299.99521 * 1 2 3 31 31 H 1.08997 * 109.47538 * 59.99865 * 1 2 3 32 32 H 1.09003 * 109.47215 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00348 * 264.99905 * 4 2 1 34 34 H 0.96999 * 119.99919 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.68666 * 52.54614 * 15 13 2 36 36 H 1.09007 * 109.67487 * 291.99912 * 15 13 2 37 37 H 1.07999 * 120.03788 * 359.97438 * 20 19 17 38 38 H 1.08008 * 119.87454 * 180.23239 * 21 20 19 39 39 H 1.08006 * 119.84290 * 179.77071 * 22 21 20 40 40 H 1.08998 * 109.68036 * 290.81783 * 27 16 15 41 41 H 1.08996 * 109.71747 * 170.27390 * 27 16 15 42 42 H 1.08996 * 109.50794 * 67.62304 * 28 27 16 43 43 H 1.09002 * 109.51182 * 187.77436 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3757 6 1 1.8925 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5091 8 7 2.9253 -1.9387 -3.4500 9 14 2.7912 0.2705 -5.1180 10 1 2.3773 1.6828 -4.9205 11 1 4.2083 0.2277 -5.5598 12 1 1.9310 -0.3580 -6.1525 13 6 2.0400 -0.7213 1.2492 14 1 3.1261 -0.8015 1.2054 15 6 1.6349 0.0695 2.4983 16 7 1.9708 -0.7331 3.6850 17 6 2.6783 -0.2040 4.7029 18 8 3.1255 0.9228 4.6113 19 6 2.9104 -0.9932 5.9297 20 6 1.8664 -1.7237 6.5020 21 6 2.0895 -2.4624 7.6443 22 6 3.3425 -2.4751 8.2327 23 6 4.3825 -1.7506 7.6773 24 9 5.6023 -1.7676 8.2577 25 6 4.1741 -1.0079 6.5265 26 9 5.1888 -0.3005 5.9831 27 6 1.5120 -2.1306 3.7274 28 6 1.9230 -2.8143 2.4183 29 8 1.4669 -2.0294 1.3139 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2486 -2.3959 -4.2420 35 1 0.5625 0.2639 2.4781 36 1 2.1791 1.0136 2.5275 37 1 0.8864 -1.7124 6.0483 38 1 1.2826 -3.0299 8.0841 39 1 3.5092 -3.0532 9.1297 40 1 0.4273 -2.1578 3.8308 41 1 1.9741 -2.6440 4.5705 42 1 3.0087 -2.9020 2.3788 43 1 1.4748 -3.8067 2.3695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485643705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:30 Heat of formation + Delta-G solvation = -111.906724 kcal Electronic energy + Delta-G solvation = -29922.542253 eV Core-core repulsion = 25411.973650 eV Total energy + Delta-G solvation = -4510.568603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.85661 -48.91952 -40.86241 -39.17844 -38.17076 -35.60759 -34.67062 -32.64625 -31.80019 -30.96117 -30.24377 -28.54981 -27.37494 -25.13227 -24.41025 -23.62190 -23.14215 -22.28792 -20.13933 -19.67093 -18.40164 -17.98017 -17.60526 -17.23183 -16.95613 -16.53825 -16.37607 -15.86135 -15.51595 -15.45599 -15.23406 -15.13021 -14.78122 -14.49605 -14.45664 -14.11114 -13.53009 -13.36316 -13.32361 -12.97255 -12.79949 -12.63947 -12.48108 -12.16013 -12.13612 -11.98496 -11.36987 -11.16410 -10.86881 -10.74507 -10.59957 -10.36841 -10.17512 -9.94286 -9.86654 -9.66323 -9.60605 -9.27338 -8.90098 -8.60866 -6.93447 -5.73425 -3.02209 0.10108 0.36370 2.23346 2.49265 2.91679 3.25535 3.45276 3.51027 3.53145 3.80967 3.87449 3.91404 4.14362 4.19919 4.44803 4.56689 4.68760 4.79584 4.89288 5.02119 5.12104 5.14259 5.26663 5.33043 5.36771 5.37927 5.53515 5.59054 5.61830 5.65770 5.75600 5.92876 5.96392 6.09257 6.14896 6.28138 6.44297 6.62931 6.80643 7.03380 7.14787 7.42411 7.72685 7.79540 8.44695 9.56765 10.13899 10.50439 11.49071 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002517 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.908425 B =11122.714989 C =11459.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.075 3.925 14 H 0.065 0.935 15 C 0.083 3.917 16 N -0.603 5.603 17 C 0.560 3.440 18 O -0.517 6.517 19 C -0.136 4.136 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.105 4.105 23 C 0.063 3.937 24 F -0.124 7.124 25 C 0.119 3.881 26 F -0.109 7.109 27 C 0.064 3.936 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -4.584 26.968 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.039 4.039 16 N -0.336 5.336 17 C 0.347 3.653 18 O -0.393 6.393 19 C -0.140 4.140 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.124 4.124 23 C 0.042 3.958 24 F -0.102 7.102 25 C 0.097 3.903 26 F -0.087 7.087 27 C -0.059 4.059 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.033 -3.868 26.609 27.189 hybrid contribution 0.808 0.229 -0.643 1.058 sum -3.225 -3.639 25.966 26.417 Atomic orbital electron populations 1.22416 0.98612 1.01628 0.99570 1.20196 0.92848 0.94635 0.84894 0.92230 1.42360 1.77861 1.10969 1.04883 1.19291 1.36475 0.93883 0.87306 0.91098 1.24742 1.02185 0.95977 0.98046 1.69686 1.50843 1.08653 1.28693 0.86133 0.77275 0.78812 0.84075 1.20548 1.21932 1.21907 1.22994 0.97776 0.83000 0.94630 0.91729 1.22590 1.02136 0.95898 0.83309 1.48047 1.54016 1.12953 1.18622 1.17919 0.78589 0.86277 0.82514 1.90858 1.49065 1.18809 1.80598 1.19929 0.93147 1.02395 0.98506 1.21411 0.98619 0.93674 0.95301 1.21056 0.96769 0.99324 0.95247 1.21296 0.91745 0.98404 1.00956 1.17556 0.82602 1.01981 0.93627 1.91567 1.40407 1.95182 1.83071 1.17637 0.85418 0.94449 0.92770 1.91622 1.57127 1.75408 1.84566 1.22801 1.00855 0.81657 1.00576 1.22918 0.99687 0.95264 0.85403 1.88110 1.67433 1.25835 1.46062 0.94681 0.92846 0.92411 0.77674 0.93619 0.89630 0.87935 0.83359 0.83307 0.83077 0.89892 0.88801 0.92793 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.06 37.16 0.34 -2.57 16 2 C 0.19 3.66 2.77 -67.93 -0.19 3.47 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.18 5.10 -53.42 -0.27 -18.45 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 9 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C 0.08 1.27 2.60 -26.58 -0.07 1.20 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.08 1.16 5.84 -3.54 -0.02 1.14 16 16 N -0.60 -7.45 3.02 -173.44 -0.52 -7.98 16 17 C 0.56 7.67 7.12 -12.39 -0.09 7.58 16 18 O -0.52 -9.12 15.89 5.30 0.08 -9.04 16 19 C -0.14 -1.42 5.00 -104.92 -0.53 -1.95 16 20 C -0.07 -0.45 7.47 -39.18 -0.29 -0.74 16 21 C -0.11 -0.45 10.02 -39.65 -0.40 -0.85 16 22 C -0.11 -0.58 10.01 -39.46 -0.40 -0.97 16 23 C 0.06 0.57 7.30 -39.42 -0.29 0.28 16 24 F -0.12 -1.27 17.18 2.25 0.04 -1.23 16 25 C 0.12 1.37 7.25 -38.90 -0.28 1.08 16 26 F -0.11 -1.60 16.27 2.25 0.04 -1.56 16 27 C 0.06 0.58 5.16 -3.53 -0.02 0.56 16 28 C 0.05 0.53 6.99 37.31 0.26 0.79 16 29 O -0.36 -5.79 9.25 -35.23 -0.33 -6.12 16 30 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 33 H 0.39 10.61 7.59 -40.82 -0.31 10.30 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.10 6.28 -51.93 -0.33 0.78 16 36 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 37 H 0.15 0.66 6.91 -52.49 -0.36 0.29 16 38 H 0.15 0.16 8.06 -52.48 -0.42 -0.27 16 39 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.09 0.64 5.12 -51.93 -0.27 0.37 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -34.82 360.63 -7.32 -42.14 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.28 Total: 5.13 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.21 Total: 1.76 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.07 Total: -54.06 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.24 Total: -15.16 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.82 -7.32 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.768 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds