Wall clock time and date at job start Tue Mar 31 2020 23:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 N 1.46504 * 109.47085 * 240.00081 * 2 1 3 5 5 C 1.36935 * 119.99728 * 84.99805 * 4 2 1 6 6 H 1.08000 * 120.00136 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99865 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47181 * 120.00094 * 9 7 5 12 12 H 1.48497 * 109.47024 * 240.00181 * 9 7 5 13 13 C 1.53001 * 109.47247 * 120.00127 * 2 1 3 14 14 H 1.08994 * 109.51310 * 174.89695 * 13 2 1 15 15 C 1.53290 * 109.51359 * 295.00460 * 13 2 1 16 16 N 1.47151 * 108.38704 * 172.27544 * 15 13 2 17 17 C 1.34778 * 120.98212 * 129.43820 * 16 15 13 18 18 O 1.21575 * 119.99855 * 355.07586 * 17 16 15 19 19 C 1.47702 * 120.00105 * 175.07835 * 17 16 15 20 20 C 1.39687 * 120.15009 * 316.07155 * 19 17 16 21 21 C 1.37848 * 119.91911 * 179.76808 * 20 19 17 22 22 C 1.38437 * 120.24257 * 0.49244 * 21 20 19 23 23 C 1.38379 * 120.31776 * 359.78123 * 22 21 20 24 24 F 1.35102 * 119.97066 * 179.97438 * 23 22 21 25 25 C 1.38548 * 120.07111 * 359.96076 * 23 22 21 26 26 F 1.35094 * 120.12536 * 180.02562 * 25 23 22 27 27 C 1.47148 * 118.03794 * 309.46263 * 16 15 13 28 28 C 1.53303 * 108.38275 * 50.53187 * 27 16 15 29 29 O 1.42961 * 109.55183 * 54.77347 * 13 2 1 30 30 H 1.08998 * 109.47307 * 299.99521 * 1 2 3 31 31 H 1.08997 * 109.47538 * 59.99865 * 1 2 3 32 32 H 1.09003 * 109.47215 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00348 * 264.99905 * 4 2 1 34 34 H 0.96999 * 119.99919 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.68666 * 52.54614 * 15 13 2 36 36 H 1.09007 * 109.67487 * 291.99912 * 15 13 2 37 37 H 1.07999 * 120.03788 * 359.97438 * 20 19 17 38 38 H 1.08008 * 119.87454 * 180.23239 * 21 20 19 39 39 H 1.08006 * 119.84290 * 179.77071 * 22 21 20 40 40 H 1.08998 * 109.68036 * 290.81783 * 27 16 15 41 41 H 1.08996 * 109.71747 * 170.27390 * 27 16 15 42 42 H 1.08996 * 109.50794 * 67.62304 * 28 27 16 43 43 H 1.09002 * 109.51182 * 187.77436 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3757 6 1 1.8925 1.0406 -2.4241 7 6 2.6122 -0.6616 -3.5091 8 7 2.9253 -1.9387 -3.4500 9 14 2.7912 0.2705 -5.1180 10 1 2.3773 1.6828 -4.9205 11 1 4.2083 0.2277 -5.5598 12 1 1.9310 -0.3580 -6.1525 13 6 2.0400 -0.7213 1.2492 14 1 3.1261 -0.8015 1.2054 15 6 1.6349 0.0695 2.4983 16 7 1.9708 -0.7331 3.6850 17 6 2.6783 -0.2040 4.7029 18 8 3.1255 0.9228 4.6113 19 6 2.9104 -0.9932 5.9297 20 6 1.8664 -1.7237 6.5020 21 6 2.0895 -2.4624 7.6443 22 6 3.3425 -2.4751 8.2327 23 6 4.3825 -1.7506 7.6773 24 9 5.6023 -1.7676 8.2577 25 6 4.1741 -1.0079 6.5265 26 9 5.1888 -0.3005 5.9831 27 6 1.5120 -2.1306 3.7274 28 6 1.9230 -2.8143 2.4183 29 8 1.4669 -2.0294 1.3139 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2486 -2.3959 -4.2420 35 1 0.5625 0.2639 2.4781 36 1 2.1791 1.0136 2.5275 37 1 0.8864 -1.7124 6.0483 38 1 1.2826 -3.0299 8.0841 39 1 3.5092 -3.0532 9.1297 40 1 0.4273 -2.1578 3.8308 41 1 1.9741 -2.6440 4.5705 42 1 3.0087 -2.9020 2.3788 43 1 1.4748 -3.8067 2.3695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485643705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:29 Heat of formation + Delta-G solvation = -136.340139 kcal Electronic energy + Delta-G solvation = -29923.601765 eV Core-core repulsion = 25411.973650 eV Total energy + Delta-G solvation = -4511.628115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.65204 -49.73356 -41.83028 -40.10721 -39.13273 -37.16309 -35.88396 -34.37459 -32.70708 -31.75075 -31.42583 -30.00519 -28.61717 -26.54982 -25.44748 -24.97277 -23.81615 -23.46121 -21.33582 -20.88305 -19.37854 -19.13594 -18.70495 -18.37335 -17.85860 -17.49846 -17.39287 -16.97979 -16.62952 -16.50078 -16.15617 -16.12583 -15.89015 -15.68778 -15.55895 -15.32535 -15.11307 -14.52574 -14.43199 -14.12110 -13.96431 -13.68698 -13.45234 -13.15345 -13.09908 -12.88949 -12.83853 -12.77435 -12.44695 -12.38564 -12.14393 -11.86914 -11.65641 -11.63547 -11.28977 -11.05906 -10.95268 -10.24947 -9.89198 -9.68687 -9.01415 -7.93135 -5.21701 -0.51396 -0.21522 1.31052 1.46784 1.47660 1.57545 1.61858 2.28442 2.55780 2.62316 2.75435 3.02773 3.26315 3.40711 3.53629 3.57904 3.70798 3.87569 3.91255 3.96356 4.06914 4.11311 4.27974 4.32712 4.38823 4.48672 4.58176 4.61229 4.67301 4.77793 4.81344 4.82754 4.94746 4.99900 5.07568 5.10004 5.16939 5.27117 5.51377 5.58914 5.64078 6.07247 6.21668 6.28901 6.79161 7.34938 8.10435 8.35014 9.30624 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002517 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.908425 B =11122.714989 C =11459.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.056 0.944 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.292 1.292 13 C 0.090 3.910 14 H 0.032 0.968 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.556 3.444 18 O -0.572 6.572 19 C -0.154 4.154 20 C -0.059 4.059 21 C -0.079 4.079 22 C -0.086 4.086 23 C 0.046 3.954 24 F -0.138 7.138 25 C 0.076 3.924 26 F -0.143 7.143 27 C 0.068 3.932 28 C 0.035 3.965 29 O -0.377 6.377 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.201 0.799 39 H 0.186 0.814 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.036 0.964 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -6.026 29.759 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.374 5.374 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.220 1.220 13 C 0.031 3.969 14 H 0.050 0.950 15 C -0.030 4.030 16 N -0.333 5.333 17 C 0.345 3.655 18 O -0.452 6.452 19 C -0.158 4.158 20 C -0.078 4.078 21 C -0.096 4.096 22 C -0.104 4.104 23 C 0.026 3.974 24 F -0.117 7.117 25 C 0.055 3.945 26 F -0.122 7.122 27 C -0.053 4.053 28 C -0.042 4.042 29 O -0.296 6.296 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.195 0.805 38 H 0.218 0.782 39 H 0.204 0.796 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.055 0.945 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.016 -5.308 29.444 30.731 hybrid contribution 1.683 0.592 -1.362 2.244 sum -5.333 -4.716 28.083 28.971 Atomic orbital electron populations 1.22199 0.96360 1.01425 1.00662 1.20437 0.94262 0.94320 0.84314 0.92646 1.42541 1.78361 1.10473 1.05998 1.19678 1.34773 0.94190 0.88280 0.90542 1.25556 1.03052 0.96923 1.01459 1.69843 1.52678 1.10237 1.29252 0.85091 0.76680 0.78234 0.79886 1.18997 1.22334 1.21956 1.22537 0.95673 0.84092 0.94628 0.95026 1.22329 1.02910 0.94889 0.82896 1.48125 1.53582 1.14110 1.17529 1.18497 0.77486 0.85946 0.83609 1.90818 1.51114 1.21381 1.81868 1.19789 0.94095 1.04067 0.97815 1.21810 0.98239 0.92122 0.95587 1.21640 0.97192 0.97404 0.93363 1.21808 0.90881 0.96473 1.01260 1.17897 0.83213 1.02903 0.93379 1.91526 1.41603 1.95378 1.83160 1.18148 0.85495 0.96265 0.94575 1.91520 1.58670 1.76641 1.85373 1.23060 1.02998 0.79427 0.99856 1.23258 0.99104 0.96363 0.85472 1.88059 1.67442 1.25554 1.48541 0.90779 0.94467 0.93162 0.79283 0.94143 0.87453 0.89715 0.80547 0.78238 0.79628 0.86476 0.85929 0.94542 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.06 71.98 0.65 -4.46 16 2 C 0.18 7.06 2.77 44.99 0.12 7.19 16 3 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 4 N -0.73 -38.22 5.10 -322.93 -1.65 -39.87 16 5 C -0.24 -13.48 9.93 84.03 0.83 -12.64 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 8 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 9 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 13 C 0.09 3.11 2.60 30.69 0.08 3.19 16 14 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 15 C 0.09 2.58 5.84 86.35 0.50 3.08 16 16 N -0.60 -14.20 3.02 -820.91 -2.48 -16.67 16 17 C 0.56 15.30 7.12 86.74 0.62 15.92 16 18 O -0.57 -21.40 15.89 -3.95 -0.06 -21.46 16 19 C -0.15 -3.04 5.00 -20.06 -0.10 -3.14 16 20 C -0.06 -0.47 7.47 22.53 0.17 -0.31 16 21 C -0.08 -0.18 10.02 22.22 0.22 0.04 16 22 C -0.09 -0.56 10.01 22.35 0.22 -0.33 16 23 C 0.05 0.79 7.30 22.38 0.16 0.95 16 24 F -0.14 -2.85 17.18 44.97 0.77 -2.08 16 25 C 0.08 1.80 7.25 22.71 0.16 1.96 16 26 F -0.14 -4.64 16.27 44.97 0.73 -3.90 16 27 C 0.07 1.00 5.16 86.36 0.45 1.45 16 28 C 0.04 0.76 6.99 72.08 0.50 1.26 16 29 O -0.38 -12.08 9.25 -148.98 -1.38 -13.46 16 30 H 0.07 1.98 6.42 -2.39 -0.02 1.96 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.82 7.56 -2.39 -0.02 1.81 16 33 H 0.38 21.31 7.59 -92.71 -0.70 20.61 16 34 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.11 2.51 6.28 -2.39 -0.01 2.49 16 36 H 0.08 2.68 7.06 -2.38 -0.02 2.66 16 37 H 0.18 0.44 6.91 -2.91 -0.02 0.42 16 38 H 0.20 -1.36 8.06 -2.91 -0.02 -1.39 16 39 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 40 H 0.12 1.06 8.12 -2.39 -0.02 1.04 16 41 H 0.12 1.14 5.12 -2.39 -0.01 1.13 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -83.82 360.63 3.68 -80.14 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.36 Total: 18.47 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.07 Total: 10.06 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.84 Total: -117.03 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.44 Total: -34.92 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.50 Total: -5.98 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -83.82 3.68 -80.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.198 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds