Wall clock time and date at job start Tue Mar 31 2020 23:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46917 * 2 1 4 4 N 1.46500 * 109.47321 * 120.00269 * 2 1 3 5 5 C 1.36938 * 119.99771 * 275.00279 * 4 2 1 6 6 H 1.07999 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99690 * 180.27368 * 5 4 2 8 8 N 1.31615 * 120.00379 * 359.72542 * 7 5 4 9 9 Si 1.86803 * 119.99653 * 179.72394 * 7 5 4 10 10 H 1.48492 * 109.47474 * 60.00221 * 9 7 5 11 11 H 1.48505 * 109.46687 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 299.99756 * 9 7 5 13 13 C 1.53005 * 109.47050 * 240.00309 * 2 1 3 14 14 H 1.09001 * 109.51335 * 64.90145 * 13 2 1 15 15 C 1.53301 * 109.50871 * 184.99610 * 13 2 1 16 16 N 1.47152 * 108.38099 * 172.22493 * 15 13 2 17 17 C 1.34780 * 120.98087 * 129.49145 * 16 15 13 18 18 O 1.21567 * 119.99795 * 354.47959 * 17 16 15 19 19 C 1.47698 * 119.99913 * 174.49068 * 17 16 15 20 20 C 1.39690 * 120.15368 * 313.61366 * 19 17 16 21 21 C 1.37842 * 119.92226 * 179.77268 * 20 19 17 22 22 C 1.38438 * 120.24175 * 0.48825 * 21 20 19 23 23 C 1.38383 * 120.31518 * 359.78801 * 22 21 20 24 24 F 1.35101 * 119.96144 * 179.97438 * 23 22 21 25 25 C 1.38539 * 120.06994 * 359.95832 * 23 22 21 26 26 F 1.35104 * 120.11625 * 180.02562 * 25 23 22 27 27 C 1.47155 * 118.03874 * 309.46778 * 16 15 13 28 28 C 1.53290 * 108.38288 * 50.53424 * 27 16 15 29 29 O 1.42961 * 109.51315 * 304.74121 * 13 2 1 30 30 H 1.08997 * 109.47198 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47294 * 299.99552 * 1 2 3 33 33 H 0.96995 * 119.99874 * 95.00265 * 4 2 1 34 34 H 0.96999 * 120.00653 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.68492 * 291.94792 * 15 13 2 36 36 H 1.09003 * 109.67846 * 52.46964 * 15 13 2 37 37 H 1.08002 * 120.03347 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.87573 * 180.23545 * 21 20 19 39 39 H 1.08006 * 119.84280 * 179.76215 * 22 21 20 40 40 H 1.08992 * 109.68227 * 170.26096 * 27 16 15 41 41 H 1.09000 * 109.67653 * 290.81339 * 27 16 15 42 42 H 1.08993 * 109.51419 * 67.62410 * 28 27 16 43 43 H 1.09007 * 109.51130 * 187.77924 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8925 1.0404 2.4242 7 6 2.6172 -0.6606 3.5077 8 7 2.9303 -1.9376 3.4486 9 14 2.8028 0.2732 5.1149 10 1 1.4823 0.8101 5.5309 11 1 3.3175 -0.6438 6.1634 12 1 3.7570 1.3957 4.9279 13 6 2.0399 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1376 15 6 3.5678 -0.8316 -1.1889 16 7 4.0154 -1.6874 -2.2991 17 6 4.9966 -1.2867 -3.1318 18 8 5.4563 -0.1655 -3.0346 19 6 5.5131 -2.2098 -4.1627 20 6 5.8257 -3.5299 -3.8294 21 6 6.3030 -4.3886 -4.7962 22 6 6.4834 -3.9450 -6.0951 23 6 6.1824 -2.6378 -6.4350 24 9 6.3617 -2.2124 -7.7047 25 6 5.6969 -1.7651 -5.4748 26 9 5.4022 -0.4888 -5.8057 27 6 3.3607 -2.9937 -2.4731 28 6 1.8430 -2.7778 -2.4709 29 8 1.4751 -2.0332 -1.3073 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.2578 -2.3938 4.2394 35 1 4.0117 0.1591 -1.2869 36 1 3.8664 -1.2754 -0.2391 37 1 5.6897 -3.8783 -2.8161 38 1 6.5408 -5.4101 -4.5385 39 1 6.8614 -4.6223 -6.8467 40 1 3.6674 -3.4347 -3.4214 41 1 3.6385 -3.6556 -1.6529 42 1 1.5527 -2.2246 -3.3640 43 1 1.3379 -3.7438 -2.4597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485643707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:37 Heat of formation + Delta-G solvation = -113.141597 kcal Electronic energy + Delta-G solvation = -30207.559101 eV Core-core repulsion = 25696.936950 eV Total energy + Delta-G solvation = -4510.622151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.80364 -48.86697 -40.70891 -39.09944 -38.06486 -35.55944 -34.61949 -32.38587 -31.75981 -30.86769 -30.14548 -28.40393 -27.79083 -24.88172 -24.08268 -23.56993 -23.09498 -22.29296 -20.00026 -19.66021 -18.31272 -17.87935 -17.52377 -17.32250 -16.86592 -16.48361 -16.28748 -15.75378 -15.49768 -15.35729 -15.20965 -14.81541 -14.66643 -14.58805 -14.24264 -14.03087 -13.41483 -13.41424 -13.21933 -13.04704 -12.68675 -12.49751 -12.33949 -12.08549 -11.92396 -11.80973 -11.38529 -11.22710 -10.84178 -10.78960 -10.49195 -10.36795 -10.16560 -9.90910 -9.89044 -9.58891 -9.50541 -9.20183 -8.92912 -8.45751 -6.94224 -5.75170 -3.03546 0.20363 0.44664 2.36960 2.65638 3.00810 3.34103 3.45573 3.50218 3.50735 3.89516 3.93791 3.97512 4.25339 4.30465 4.55087 4.60104 4.76959 4.91782 4.97989 5.10640 5.23178 5.27093 5.36126 5.42434 5.46024 5.48476 5.59593 5.64116 5.65536 5.73062 5.82397 5.98401 6.18058 6.21021 6.29293 6.39515 6.50497 6.66467 6.78756 7.14146 7.22910 7.43449 7.71511 7.95770 8.43168 9.55506 10.11413 10.48656 11.47077 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002807 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.277874 B = 9972.475690 C =10221.554217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.718 5.718 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.077 3.923 14 H 0.056 0.944 15 C 0.086 3.914 16 N -0.602 5.602 17 C 0.559 3.441 18 O -0.519 6.519 19 C -0.132 4.132 20 C -0.070 4.070 21 C -0.105 4.105 22 C -0.107 4.107 23 C 0.061 3.939 24 F -0.125 7.125 25 C 0.115 3.885 26 F -0.112 7.112 27 C 0.064 3.936 28 C 0.048 3.952 29 O -0.358 6.358 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -8.552 -20.889 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.018 3.982 14 H 0.074 0.926 15 C -0.035 4.035 16 N -0.335 5.335 17 C 0.345 3.655 18 O -0.396 6.396 19 C -0.137 4.137 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.126 4.126 23 C 0.041 3.959 24 F -0.104 7.104 25 C 0.094 3.906 26 F -0.090 7.090 27 C -0.059 4.059 28 C -0.030 4.030 29 O -0.276 6.276 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.331 -7.815 -20.584 22.440 hybrid contribution 0.333 0.473 0.351 0.677 sum 4.664 -7.342 -20.233 22.023 Atomic orbital electron populations 1.22322 0.98388 1.01621 0.99616 1.20264 0.92891 0.94644 0.85020 0.92159 1.42398 1.77722 1.10935 1.04965 1.19198 1.36510 0.93862 0.87475 0.91236 1.24704 1.02134 0.95934 0.97950 1.69650 1.50684 1.08637 1.28987 0.86301 0.77764 0.78643 0.83668 1.21337 1.21788 1.21295 1.22934 0.91402 0.84144 0.99703 0.92612 1.22551 0.95226 0.96712 0.89056 1.48118 1.35801 1.19286 1.30281 1.17901 0.80168 0.86450 0.80969 1.90848 1.58421 1.19549 1.70739 1.19979 1.05228 0.95994 0.92461 1.21444 0.95731 0.90506 1.01161 1.21067 0.98794 1.00906 0.91504 1.21280 0.99644 0.93200 0.98469 1.17538 1.05251 0.93584 0.79510 1.91557 1.93186 1.90296 1.35336 1.17617 1.00822 0.79989 0.92183 1.91606 1.90313 1.34455 1.92601 1.22722 0.94686 0.85235 1.03218 1.22889 0.93003 0.97624 0.89518 1.88116 1.70881 1.27123 1.41463 0.94862 0.92456 0.92771 0.77625 0.93548 0.88307 0.87843 0.83239 0.83302 0.83150 0.89127 0.89521 0.93256 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.30 37.15 0.35 -2.58 16 2 C 0.18 3.57 2.80 -67.93 -0.19 3.38 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.34 4.24 -53.43 -0.23 -17.57 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.08 1.30 2.57 -26.57 -0.07 1.23 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.48 5.84 -3.53 -0.02 1.46 16 16 N -0.60 -8.65 3.02 -173.44 -0.52 -9.18 16 17 C 0.56 8.57 7.06 -12.39 -0.09 8.48 16 18 O -0.52 -10.04 15.99 5.31 0.08 -9.96 16 19 C -0.13 -1.55 4.90 -104.92 -0.51 -2.07 16 20 C -0.07 -0.56 7.56 -39.18 -0.30 -0.85 16 21 C -0.10 -0.58 10.02 -39.65 -0.40 -0.98 16 22 C -0.11 -0.68 10.01 -39.45 -0.40 -1.07 16 23 C 0.06 0.60 7.30 -39.42 -0.29 0.31 16 24 F -0.13 -1.33 17.18 2.25 0.04 -1.29 16 25 C 0.12 1.40 7.26 -38.90 -0.28 1.12 16 26 F -0.11 -1.66 16.34 2.25 0.04 -1.62 16 27 C 0.06 0.70 5.28 -3.53 -0.02 0.68 16 28 C 0.05 0.55 6.98 37.31 0.26 0.81 16 29 O -0.36 -5.81 9.24 -35.23 -0.33 -6.13 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 10.06 7.08 -40.82 -0.29 9.77 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.10 1.82 7.06 -51.93 -0.37 1.45 16 36 H 0.10 2.06 6.94 -51.93 -0.36 1.70 16 37 H 0.15 1.02 7.16 -52.49 -0.38 0.65 16 38 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.09 0.73 5.27 -51.93 -0.27 0.46 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -33.23 362.52 -7.36 -40.59 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.41 Total: 6.35 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.20 Total: 2.90 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.03 Total: -53.49 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.24 Total: -16.09 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.23 -7.36 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.552 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds