Wall clock time and date at job start Tue Mar 31 2020 23:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46917 * 2 1 4 4 N 1.46500 * 109.47321 * 120.00269 * 2 1 3 5 5 C 1.36938 * 119.99771 * 275.00279 * 4 2 1 6 6 H 1.07999 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99690 * 180.27368 * 5 4 2 8 8 N 1.31615 * 120.00379 * 359.72542 * 7 5 4 9 9 Si 1.86803 * 119.99653 * 179.72394 * 7 5 4 10 10 H 1.48492 * 109.47474 * 60.00221 * 9 7 5 11 11 H 1.48505 * 109.46687 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 299.99756 * 9 7 5 13 13 C 1.53005 * 109.47050 * 240.00309 * 2 1 3 14 14 H 1.09001 * 109.51335 * 64.90145 * 13 2 1 15 15 C 1.53301 * 109.50871 * 184.99610 * 13 2 1 16 16 N 1.47152 * 108.38099 * 172.22493 * 15 13 2 17 17 C 1.34780 * 120.98087 * 129.49145 * 16 15 13 18 18 O 1.21567 * 119.99795 * 354.47959 * 17 16 15 19 19 C 1.47698 * 119.99913 * 174.49068 * 17 16 15 20 20 C 1.39690 * 120.15368 * 313.61366 * 19 17 16 21 21 C 1.37842 * 119.92226 * 179.77268 * 20 19 17 22 22 C 1.38438 * 120.24175 * 0.48825 * 21 20 19 23 23 C 1.38383 * 120.31518 * 359.78801 * 22 21 20 24 24 F 1.35101 * 119.96144 * 179.97438 * 23 22 21 25 25 C 1.38539 * 120.06994 * 359.95832 * 23 22 21 26 26 F 1.35104 * 120.11625 * 180.02562 * 25 23 22 27 27 C 1.47155 * 118.03874 * 309.46778 * 16 15 13 28 28 C 1.53290 * 108.38288 * 50.53424 * 27 16 15 29 29 O 1.42961 * 109.51315 * 304.74121 * 13 2 1 30 30 H 1.08997 * 109.47198 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47294 * 299.99552 * 1 2 3 33 33 H 0.96995 * 119.99874 * 95.00265 * 4 2 1 34 34 H 0.96999 * 120.00653 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.68492 * 291.94792 * 15 13 2 36 36 H 1.09003 * 109.67846 * 52.46964 * 15 13 2 37 37 H 1.08002 * 120.03347 * 0.02562 * 20 19 17 38 38 H 1.07999 * 119.87573 * 180.23545 * 21 20 19 39 39 H 1.08006 * 119.84280 * 179.76215 * 22 21 20 40 40 H 1.08992 * 109.68227 * 170.26096 * 27 16 15 41 41 H 1.09000 * 109.67653 * 290.81339 * 27 16 15 42 42 H 1.08993 * 109.51419 * 67.62410 * 28 27 16 43 43 H 1.09007 * 109.51130 * 187.77924 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8925 1.0404 2.4242 7 6 2.6172 -0.6606 3.5077 8 7 2.9303 -1.9376 3.4486 9 14 2.8028 0.2732 5.1149 10 1 1.4823 0.8101 5.5309 11 1 3.3175 -0.6438 6.1634 12 1 3.7570 1.3957 4.9279 13 6 2.0399 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1376 15 6 3.5678 -0.8316 -1.1889 16 7 4.0154 -1.6874 -2.2991 17 6 4.9966 -1.2867 -3.1318 18 8 5.4563 -0.1655 -3.0346 19 6 5.5131 -2.2098 -4.1627 20 6 5.8257 -3.5299 -3.8294 21 6 6.3030 -4.3886 -4.7962 22 6 6.4834 -3.9450 -6.0951 23 6 6.1824 -2.6378 -6.4350 24 9 6.3617 -2.2124 -7.7047 25 6 5.6969 -1.7651 -5.4748 26 9 5.4022 -0.4888 -5.8057 27 6 3.3607 -2.9937 -2.4731 28 6 1.8430 -2.7778 -2.4709 29 8 1.4751 -2.0332 -1.3073 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.2578 -2.3938 4.2394 35 1 4.0117 0.1591 -1.2869 36 1 3.8664 -1.2754 -0.2391 37 1 5.6897 -3.8783 -2.8161 38 1 6.5408 -5.4101 -4.5385 39 1 6.8614 -4.6223 -6.8467 40 1 3.6674 -3.4347 -3.4214 41 1 3.6385 -3.6556 -1.6529 42 1 1.5527 -2.2246 -3.3640 43 1 1.3379 -3.7438 -2.4597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485643707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:36 Heat of formation + Delta-G solvation = -135.246118 kcal Electronic energy + Delta-G solvation = -30208.517625 eV Core-core repulsion = 25696.936950 eV Total energy + Delta-G solvation = -4511.580675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.64874 -49.72739 -41.80185 -40.09868 -39.13114 -37.13779 -35.90855 -34.18102 -32.68610 -31.64996 -31.37762 -30.12847 -28.97411 -26.12169 -25.43609 -24.99631 -23.83020 -23.43360 -21.33235 -20.87895 -19.43857 -19.11141 -18.71088 -18.36540 -17.84864 -17.51162 -17.40186 -16.95275 -16.68943 -16.26852 -16.14803 -16.11330 -15.86267 -15.71218 -15.50177 -15.20622 -15.07734 -14.71713 -14.38311 -14.07471 -13.99086 -13.55272 -13.41108 -13.13817 -13.09288 -12.85206 -12.80122 -12.72606 -12.55205 -12.47846 -12.21698 -11.83073 -11.70179 -11.59912 -11.20284 -11.06102 -10.92812 -10.25211 -9.90737 -9.69159 -8.94760 -7.89119 -5.16123 -0.51494 -0.22536 1.33382 1.49117 1.51065 1.56608 1.60634 2.25796 2.58700 2.60672 2.76931 3.02617 3.25872 3.44672 3.56252 3.64894 3.70661 3.90834 3.92503 3.95341 4.05170 4.13809 4.23961 4.30121 4.36429 4.51172 4.61346 4.66324 4.74555 4.79462 4.81674 4.83591 4.97450 4.99014 5.08020 5.09220 5.17478 5.24579 5.54957 5.57590 5.60820 6.10630 6.23412 6.32875 6.79473 7.40235 8.14286 8.41128 9.33717 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.002807 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.277874 B = 9972.475690 C =10221.554217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.073 0.927 7 C -0.071 4.071 8 N -0.964 5.964 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.282 1.282 13 C 0.093 3.907 14 H 0.071 0.929 15 C 0.095 3.905 16 N -0.599 5.599 17 C 0.554 3.446 18 O -0.574 6.574 19 C -0.150 4.150 20 C -0.064 4.064 21 C -0.078 4.078 22 C -0.084 4.084 23 C 0.051 3.949 24 F -0.135 7.135 25 C 0.081 3.919 26 F -0.140 7.140 27 C 0.063 3.937 28 C 0.040 3.960 29 O -0.379 6.379 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.379 0.621 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.189 0.811 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -11.249 -22.525 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.065 3.935 3 H 0.074 0.926 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.091 0.909 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.209 1.209 13 C 0.034 3.966 14 H 0.089 0.911 15 C -0.028 4.028 16 N -0.331 5.331 17 C 0.343 3.657 18 O -0.455 6.455 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.095 4.095 22 C -0.102 4.102 23 C 0.031 3.969 24 F -0.114 7.114 25 C 0.060 3.940 26 F -0.119 7.119 27 C -0.058 4.058 28 C -0.037 4.037 29 O -0.298 6.298 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.212 0.788 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.206 0.794 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.378 -10.517 -22.261 25.006 hybrid contribution 0.321 1.226 0.735 1.465 sum 4.699 -9.291 -21.526 23.912 Atomic orbital electron populations 1.22142 0.96880 1.01283 1.00384 1.20471 0.93803 0.94499 0.84746 0.92555 1.42472 1.78042 1.10482 1.05621 1.19555 1.34819 0.94113 0.88496 0.90930 1.25420 1.03079 0.96836 1.00987 1.69794 1.52400 1.09967 1.29328 0.85330 0.77783 0.77359 0.79984 1.20652 1.22260 1.20869 1.22582 0.90572 0.84986 0.98506 0.91149 1.22143 0.95752 0.95951 0.88909 1.48161 1.35699 1.20158 1.29106 1.18549 0.79516 0.86385 0.81271 1.90804 1.60165 1.22150 1.72333 1.19738 1.07604 0.96941 0.91172 1.21711 0.95015 0.88956 1.02576 1.21582 0.95673 1.02203 0.90079 1.21786 0.97016 0.91696 0.99718 1.17809 1.05792 0.94562 0.78716 1.91531 1.93326 1.90646 1.35853 1.18019 1.03093 0.79519 0.93331 1.91520 1.90950 1.36535 1.92881 1.22995 0.94007 0.83504 1.05294 1.23246 0.93692 0.98546 0.88171 1.88073 1.71074 1.26733 1.43879 0.91731 0.93261 0.94284 0.78827 0.94177 0.90484 0.90962 0.81871 0.78595 0.79369 0.85692 0.88891 0.92338 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.30 71.98 0.67 -4.65 16 2 C 0.17 6.91 2.80 44.99 0.13 7.04 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.72 -35.94 4.24 -322.94 -1.37 -37.31 16 5 C -0.24 -13.10 9.93 84.03 0.83 -12.26 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.96 -58.15 13.06 21.65 0.28 -57.87 16 9 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.09 3.14 2.57 30.70 0.08 3.22 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.10 3.44 5.84 86.36 0.50 3.94 16 16 N -0.60 -17.39 3.02 -820.91 -2.48 -19.87 16 17 C 0.55 17.52 7.06 86.74 0.61 18.14 16 18 O -0.57 -23.78 15.99 -3.93 -0.06 -23.85 16 19 C -0.15 -3.42 4.90 -20.06 -0.10 -3.52 16 20 C -0.06 -0.81 7.56 22.53 0.17 -0.64 16 21 C -0.08 -0.43 10.02 22.22 0.22 -0.20 16 22 C -0.08 -0.66 10.01 22.35 0.22 -0.44 16 23 C 0.05 0.90 7.30 22.38 0.16 1.06 16 24 F -0.13 -2.73 17.18 44.97 0.77 -1.95 16 25 C 0.08 1.98 7.26 22.71 0.16 2.15 16 26 F -0.14 -4.45 16.34 44.97 0.73 -3.71 16 27 C 0.06 1.24 5.28 86.35 0.46 1.70 16 28 C 0.04 0.84 6.98 72.08 0.50 1.35 16 29 O -0.38 -11.96 9.24 -148.98 -1.38 -13.34 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.85 7.57 -2.39 -0.02 1.83 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.38 20.21 7.08 -92.71 -0.66 19.55 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.08 3.07 7.06 -2.39 -0.02 3.06 16 36 H 0.07 3.06 6.94 -2.39 -0.02 3.04 16 37 H 0.16 1.63 7.16 -2.91 -0.02 1.61 16 38 H 0.20 -0.59 8.06 -2.91 -0.02 -0.62 16 39 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.13 1.60 5.27 -2.39 -0.01 1.58 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -78.11 362.52 4.03 -74.08 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.40 Total: 22.11 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.10 Total: 13.32 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.57 Total: -115.05 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.44 Total: -37.18 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.51 Total: -5.66 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.11 4.03 -74.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.165 kcal (2) G-P(sol) polarization free energy of solvation -78.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds