Wall clock time and date at job start Tue Mar 31 2020 23:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 117.00155 * 2 1 4 4 C 1.39270 * 120.13893 * 179.97438 * 3 2 1 5 5 C 1.38636 * 117.91678 * 179.77386 * 4 3 2 6 6 C 1.38759 * 118.02307 * 0.48281 * 5 4 3 7 7 C 1.50706 * 120.01690 * 179.78495 * 6 5 4 8 8 N 1.46900 * 109.46923 * 94.71977 * 7 6 5 9 9 C 1.46904 * 110.99558 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47005 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.46736 * 65.00012 * 10 9 8 12 12 C 1.52996 * 109.47047 * 185.00346 * 10 9 8 13 13 N 1.46505 * 109.46912 * 305.00404 * 10 9 8 14 14 C 1.34773 * 119.99716 * 155.00170 * 13 10 9 15 15 O 1.21276 * 120.00090 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99800 * 179.97438 * 14 13 10 17 17 S 1.81001 * 109.47109 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99949 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99971 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00173 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00295 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99713 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47199 * 89.99726 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99731 * 22 20 18 25 25 H 1.48501 * 109.47005 * 329.99638 * 22 20 18 26 26 N 1.31815 * 119.97186 * 359.50733 * 6 5 4 27 27 N 1.28344 * 122.26367 * 0.25732 * 26 6 5 28 28 H 1.08997 * 109.46920 * 299.99630 * 1 2 3 29 29 H 1.08999 * 109.47082 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.07999 * 121.04276 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.99192 * 180.24306 * 5 4 3 33 33 H 1.09000 * 109.47292 * 214.72839 * 7 6 5 34 34 H 1.09001 * 109.46828 * 334.72435 * 7 6 5 35 35 H 1.00892 * 111.00116 * 303.95715 * 8 7 6 36 36 H 1.08999 * 109.47318 * 300.00246 * 9 8 7 37 37 H 1.08998 * 109.46993 * 60.00291 * 9 8 7 38 38 H 1.09003 * 109.47075 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.46859 * 299.99712 * 12 10 9 40 40 H 1.09001 * 109.47534 * 59.99702 * 12 10 9 41 41 H 0.96996 * 119.99960 * 334.99806 * 13 10 9 42 42 H 1.08997 * 109.47395 * 300.00083 * 16 14 13 43 43 H 1.09005 * 109.46701 * 60.00225 * 16 14 13 44 44 H 0.96991 * 120.00089 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4357 1.2852 0.0005 5 6 4.0167 2.5439 -0.0043 6 6 3.1779 3.6492 0.0009 7 6 3.7616 5.0386 0.0008 8 7 3.8406 5.5365 -1.3790 9 6 4.4068 6.8914 -1.4181 10 6 4.4724 7.3751 -2.8682 11 1 3.4618 7.4733 -3.2645 12 6 5.1755 8.7329 -2.9216 13 7 5.2204 6.4058 -3.6728 14 6 5.0028 6.3213 -5.0001 15 8 4.1875 7.0472 -5.5284 16 6 5.7727 5.3247 -5.8279 17 16 5.2589 5.4531 -7.5587 18 6 6.2859 4.2136 -8.2755 19 1 6.9660 3.6500 -7.6539 20 6 6.2200 3.9606 -9.6386 21 7 6.9868 3.0344 -10.1740 22 14 5.0431 4.9349 -10.7135 23 1 5.7288 6.1492 -11.2238 24 1 4.6071 4.0948 -11.8578 25 1 3.8579 5.3350 -9.9133 26 7 1.8702 3.4834 0.0004 27 7 1.3270 2.3206 0.0000 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0424 0.3917 0.0005 32 1 5.0904 2.6607 -0.0081 33 1 3.1260 5.6998 0.5900 34 1 4.7608 5.0129 0.4356 35 1 4.3715 4.9061 -1.9610 36 1 3.7760 7.5657 -0.8388 37 1 5.4105 6.8781 -0.9933 38 1 5.2218 9.0777 -3.9546 39 1 4.6189 9.4540 -2.3229 40 1 6.1861 8.6347 -2.5252 41 1 5.8723 5.8250 -3.2502 42 1 6.8395 5.5335 -5.7488 43 1 5.5716 4.3172 -5.4634 44 1 6.9410 2.8579 -11.1266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732946292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:41 Heat of formation + Delta-G solvation = -44.925873 kcal Electronic energy + Delta-G solvation = -26012.332921 eV Core-core repulsion = 22090.801964 eV Total energy + Delta-G solvation = -3921.530958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27390 -40.81716 -39.60460 -38.07199 -35.82135 -34.67524 -34.18257 -33.18274 -32.18587 -30.02425 -28.68555 -28.00385 -27.84734 -25.48977 -24.96383 -23.33736 -22.67862 -21.52071 -19.93314 -19.68698 -18.78138 -18.10342 -17.57962 -17.35354 -17.13044 -16.86897 -16.48864 -16.11929 -16.00431 -15.72452 -15.56867 -15.11329 -15.01956 -14.90766 -14.81552 -14.54285 -14.01573 -13.92646 -13.35302 -13.31854 -13.21898 -13.02259 -12.96854 -12.94212 -12.82143 -12.57523 -12.48270 -12.24468 -11.89347 -11.82768 -11.27114 -11.17495 -10.93308 -10.62786 -10.52072 -10.16298 -10.09902 -9.35436 -8.99101 -8.52141 -6.22105 -0.22979 -0.07644 0.99930 1.30256 1.46892 1.56298 1.62741 1.88738 2.23182 2.27853 2.41231 2.73070 2.86327 2.97833 3.21421 3.40708 3.65162 3.83907 3.90760 3.97782 4.02242 4.22516 4.26415 4.32109 4.33402 4.38685 4.46655 4.47288 4.50262 4.68532 4.71292 4.75054 4.78953 4.82920 4.98494 5.12633 5.13420 5.31970 5.56010 5.70531 5.93267 5.98754 6.10997 6.34458 6.51571 6.93669 7.26716 7.63818 8.60225 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.002565 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.026092 B =10914.873646 C =13152.146883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.242 3.758 4 C -0.136 4.136 5 C -0.068 4.068 6 C 0.034 3.966 7 C 0.124 3.876 8 N -0.704 5.704 9 C 0.067 3.933 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.157 4.157 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.110 4.110 17 S -0.181 6.181 18 C -0.526 4.526 19 H 0.064 0.936 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.239 1.239 26 N -0.225 5.225 27 N -0.333 5.333 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.199 0.801 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.343 0.657 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 0.391 29.715 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.215 6.215 3 C 0.056 3.944 4 C -0.165 4.165 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.006 4.006 8 N -0.337 5.337 9 C -0.062 4.062 10 C 0.039 3.961 11 H 0.080 0.920 12 C -0.216 4.216 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.261 4.261 17 S 0.046 5.954 18 C -0.673 4.673 19 H 0.082 0.918 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.163 1.163 26 N -0.067 5.067 27 N -0.189 5.189 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.201 0.799 32 H 0.216 0.784 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.162 0.838 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.250 0.750 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.742 2.056 28.720 29.572 hybrid contribution 2.730 -1.985 -0.196 3.381 sum -4.012 0.070 28.524 28.805 Atomic orbital electron populations 1.23172 0.75520 1.05250 1.02350 1.86227 1.24546 1.23241 1.87476 1.21924 0.92301 0.87139 0.93041 1.21986 0.91566 1.01632 1.01302 1.22692 1.04017 0.90051 0.92840 1.23054 0.91022 0.98744 0.98684 1.20721 1.00688 0.88683 0.90513 1.60234 1.59258 1.04274 1.09945 1.22229 1.00160 0.89989 0.93835 1.21072 0.95571 0.88570 0.90890 0.91963 1.22102 1.01841 0.95984 1.01669 1.45748 1.43527 1.40555 1.06101 1.19912 0.81830 0.82812 0.83232 1.90693 1.36168 1.44901 1.72377 1.23272 1.04103 1.02520 0.96203 1.84798 1.56036 1.51084 1.03524 1.22456 1.25634 1.22356 0.96895 0.91787 1.25535 0.96640 0.95361 0.98408 1.70005 1.39559 1.32353 1.13597 0.85896 0.81173 0.79528 0.79968 1.18637 1.18402 1.16301 1.72631 1.12952 1.13483 1.07674 1.72993 1.33078 0.94865 1.17927 0.92050 0.92893 0.85241 0.79909 0.78372 0.88936 0.89121 0.83766 0.88099 0.91144 0.94793 0.89660 0.90459 0.74995 0.86732 0.86989 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.40 113.37 1.18 1.65 16 2 O -0.31 -6.07 10.49 -90.04 -0.94 -7.01 16 3 C 0.24 5.09 7.57 84.86 0.64 5.73 16 4 C -0.14 -1.91 10.16 22.61 0.23 -1.68 16 5 C -0.07 -0.74 9.85 22.49 0.22 -0.51 16 6 C 0.03 0.55 6.38 42.69 0.27 0.83 16 7 C 0.12 1.31 6.02 85.56 0.51 1.82 16 8 N -0.70 -9.94 6.48 -517.91 -3.36 -13.30 16 9 C 0.07 0.72 5.30 86.30 0.46 1.18 16 10 C 0.14 2.68 2.88 44.99 0.13 2.81 16 11 H 0.06 1.65 7.58 -2.39 -0.02 1.64 16 12 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 13 N -0.71 -14.80 4.36 -442.53 -1.93 -16.72 16 14 C 0.54 17.87 7.81 87.66 0.68 18.55 16 15 O -0.56 -24.16 15.52 -3.02 -0.05 -24.20 16 16 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 17 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 18 C -0.53 -30.50 10.04 67.95 0.68 -29.82 16 19 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.70 5.50 84.86 0.47 3.17 16 21 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 22 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 26 N -0.22 -5.51 11.42 -47.59 -0.54 -6.06 16 27 N -0.33 -8.49 10.41 -170.23 -1.77 -10.26 16 28 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 29 H 0.05 0.90 8.11 -2.39 -0.02 0.88 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.20 0.32 8.06 -2.91 -0.02 0.29 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.09 0.29 8.06 -2.39 -0.02 0.27 16 35 H 0.34 4.75 7.57 -89.70 -0.68 4.07 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.41 5.55 8.15 -92.71 -0.76 4.79 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 44 H 0.28 15.59 8.31 -92.72 -0.77 14.82 16 Total: -1.00 -84.58 390.74 -1.28 -85.85 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.44 Total: 11.96 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.60 Total: -1.81 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -7.30 Total: -101.87 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.99 Total: -31.22 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.21 kcal Total: -84.58 -1.28 -85.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732946292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.926 kcal (2) G-P(sol) polarization free energy of solvation -84.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds