Wall clock time and date at job start Tue Mar 31 2020 23:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47663 * 300.00143 * 3 2 1 6 6 H 1.48500 * 109.47337 * 60.00527 * 3 2 1 7 7 C 1.38807 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00550 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00115 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.89500 * 33.93089 * 10 9 7 12 12 C 1.53701 * 110.04864 * 272.76847 * 10 9 7 13 13 C 1.56563 * 106.91953 * 241.78272 * 12 10 9 14 14 C 1.54486 * 103.64729 * 336.72142 * 13 12 10 15 15 H 1.09000 * 113.38418 * 272.19214 * 14 13 12 16 16 C 1.54116 * 108.73270 * 145.08974 * 14 13 12 17 17 N 1.47069 * 107.53281 * 271.54707 * 16 14 13 18 18 C 1.34776 * 125.70874 * 181.96558 * 17 16 14 19 19 O 1.21595 * 120.00098 * 180.02562 * 18 17 16 20 20 C 1.47435 * 119.99721 * 0.02562 * 18 17 16 21 21 C 1.41282 * 126.41679 * 0.02562 * 20 18 17 22 22 N 1.30449 * 108.02396 * 179.73762 * 21 20 18 23 23 N 1.39936 * 108.89286 * 0.26242 * 22 21 20 24 24 C 1.46508 * 125.75194 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.46818 * 120.02848 * 24 23 22 26 26 F 1.39895 * 109.47163 * 240.02842 * 24 23 22 27 27 C 1.34254 * 108.49667 * 0.02562 * 23 22 21 28 28 C 1.47385 * 108.58060 * 2.22928 * 17 16 14 29 29 C 1.53801 * 109.90446 * 154.99863 * 10 9 7 30 30 H 1.08998 * 113.27843 * 264.82608 * 29 10 9 31 31 H 0.97005 * 120.00314 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00189 * 359.97438 * 9 7 2 33 33 H 1.09004 * 110.02016 * 1.04471 * 12 10 9 34 34 H 1.08998 * 110.01802 * 122.38488 * 12 10 9 35 35 H 1.09000 * 110.58669 * 218.44820 * 13 12 10 36 36 H 1.09000 * 111.28738 * 95.33461 * 13 12 10 37 37 H 1.08993 * 109.84178 * 152.04392 * 16 14 13 38 38 H 1.09003 * 109.91996 * 31.08725 * 16 14 13 39 39 H 1.08002 * 125.99189 * 0.02562 * 21 20 18 40 40 H 1.08996 * 109.47150 * 0.02982 * 24 23 22 41 41 H 1.08004 * 126.29256 * 179.97438 * 27 23 22 42 42 H 1.08996 * 110.33145 * 93.72754 * 28 17 16 43 43 H 1.09002 * 110.32919 * 215.94680 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9801 -3.5527 0.5716 12 6 2.3820 -4.0782 -1.4427 13 6 1.6589 -5.4443 -1.6915 14 6 1.4737 -6.0227 -0.2710 15 1 2.3256 -6.6103 0.0712 16 6 0.1396 -6.7925 -0.2201 17 7 -0.9118 -5.8328 0.1494 18 6 -2.2143 -6.1256 0.3344 19 8 -2.9976 -5.2469 0.6394 20 6 -2.6894 -7.5112 0.1671 21 6 -1.9024 -8.6313 -0.1822 22 7 -2.6830 -9.6755 -0.2252 23 7 -3.9887 -9.2782 0.0842 24 6 -5.1598 -10.1566 0.1416 25 9 -5.7094 -10.1176 1.4275 26 9 -6.1132 -9.7240 -0.7863 27 6 -3.9874 -7.9563 0.3184 28 6 -0.3039 -4.4963 0.2773 29 6 1.1850 -4.7655 0.6107 30 1 1.3720 -4.9249 1.6726 31 1 -0.4851 0.8401 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 2.0105 -3.3296 -2.1426 34 1 3.4585 -4.1993 -1.5632 35 1 2.2842 -6.1053 -2.2916 36 1 0.6908 -5.2981 -2.1706 37 1 0.1974 -7.5839 0.5272 38 1 -0.0788 -7.2222 -1.1977 39 1 -0.8397 -8.6250 -0.3750 40 1 -4.8601 -11.1776 -0.0946 41 1 -4.8436 -7.3529 0.5817 42 1 -0.3912 -3.9492 -0.6614 43 1 -0.7781 -3.9404 1.0861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026387708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:03 Heat of formation + Delta-G solvation = -40.295071 kcal Electronic energy + Delta-G solvation = -29634.508026 eV Core-core repulsion = 25159.337489 eV Total energy + Delta-G solvation = -4475.170538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.42026 -48.52574 -42.63365 -41.36138 -39.44363 -36.67338 -34.95218 -33.93401 -32.69211 -31.80822 -30.42369 -29.81706 -27.74304 -26.61859 -25.45946 -24.96449 -22.90360 -22.68010 -20.90657 -20.79151 -20.24743 -19.60963 -19.05780 -18.90743 -18.66237 -17.62112 -17.15332 -16.69649 -16.66024 -16.29628 -16.09442 -15.68750 -15.53382 -15.22269 -15.06483 -14.85212 -14.68138 -14.38573 -14.29863 -14.15970 -13.88707 -13.55674 -13.41741 -13.24605 -13.22017 -13.02155 -12.61164 -12.51122 -12.33352 -12.09713 -11.68563 -11.60022 -11.51815 -11.37438 -11.28609 -11.14203 -10.96917 -10.91169 -10.22103 -9.61015 -8.96153 -7.91645 -5.20003 0.11642 0.57144 0.94609 1.46684 1.47556 1.57483 1.92666 2.27787 2.48148 2.57386 3.04426 3.35087 3.42286 3.44736 3.48144 3.52205 3.72780 3.80332 3.84807 4.11103 4.21763 4.27075 4.37080 4.37933 4.44149 4.48608 4.66375 4.71581 4.79061 4.81538 4.94564 5.08532 5.11726 5.20232 5.21254 5.29667 5.32786 5.38631 5.52638 5.59155 5.70727 6.14742 6.30987 6.53983 7.11185 7.36070 8.16000 8.35143 9.32165 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002460 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.524646 B =11377.940864 C =12340.027708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.054 0.946 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.082 4.082 15 H 0.146 0.854 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.596 3.404 19 O -0.599 6.599 20 C -0.285 4.285 21 C 0.100 3.900 22 N -0.280 5.280 23 N -0.426 5.426 24 C 0.501 3.499 25 F -0.185 7.185 26 F -0.186 7.186 27 C 0.139 3.861 28 C 0.127 3.873 29 C -0.100 4.100 30 H 0.098 0.902 31 H 0.248 0.752 32 H 0.373 0.627 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.240 0.760 40 H 0.214 0.786 41 H 0.195 0.805 42 H 0.051 0.949 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -29.277 -1.590 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.225 1.225 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.146 4.146 14 C -0.101 4.101 15 H 0.164 0.836 16 C -0.031 4.031 17 N -0.338 5.338 18 C 0.387 3.613 19 O -0.481 6.481 20 C -0.299 4.299 21 C -0.089 4.089 22 N -0.098 5.098 23 N -0.215 5.215 24 C 0.368 3.632 25 F -0.167 7.167 26 F -0.167 7.167 27 C -0.009 4.009 28 C 0.004 3.996 29 C -0.120 4.120 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.207 0.793 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.255 0.745 40 H 0.230 0.770 41 H 0.212 0.788 42 H 0.069 0.931 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.055 -30.100 -1.616 30.298 hybrid contribution -0.694 3.092 0.273 3.180 sum -3.749 -27.008 -1.344 27.301 Atomic orbital electron populations 1.69856 1.06777 1.25723 1.60202 1.25573 0.96251 1.01199 1.04415 0.85102 0.78439 0.80090 0.76338 1.18579 1.22506 1.22501 1.19716 0.91523 0.85284 1.39855 0.90247 1.42984 1.05663 1.01154 1.88522 1.20976 0.93949 0.84326 0.94525 0.92748 1.23175 1.00289 0.96912 0.97593 1.22731 1.00056 0.95581 0.96223 1.23158 0.97576 0.94407 0.94919 0.83650 1.22759 0.85993 0.92111 1.02241 1.48332 1.06985 1.10465 1.68044 1.17309 0.80633 0.87177 0.76220 1.90795 1.55375 1.50402 1.51544 1.20162 0.94377 0.94230 1.21152 1.25369 1.01963 0.87410 0.94184 1.77202 0.85890 1.23412 1.23266 1.49952 1.09215 1.06576 1.55711 1.21713 0.73473 0.95249 0.72742 1.93145 1.85899 1.97023 1.40620 1.93144 1.65442 1.92077 1.66074 1.23261 0.99438 0.85519 0.92702 1.21915 0.93763 0.84073 0.99822 1.23255 0.91894 0.96340 1.00482 0.88347 0.94343 0.79287 0.94788 0.90978 0.88335 0.93327 0.87688 0.88415 0.74451 0.77000 0.78783 0.93128 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 2 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 3 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.23 -12.86 9.95 84.03 0.84 -12.03 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -37.20 4.81 -320.54 -1.54 -38.74 16 10 C 0.17 6.24 3.23 45.50 0.15 6.38 16 11 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 12 C -0.14 -4.34 6.62 32.07 0.21 -4.13 16 13 C -0.11 -2.35 5.77 32.34 0.19 -2.16 16 14 C -0.08 -1.48 4.07 -8.78 -0.04 -1.52 16 15 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 16 C 0.09 1.49 4.27 86.65 0.37 1.86 16 17 N -0.61 -17.42 3.32 -816.02 -2.71 -20.13 16 18 C 0.60 19.36 7.85 86.67 0.68 20.04 16 19 O -0.60 -25.79 17.14 -4.02 -0.07 -25.85 16 20 C -0.29 -6.75 6.09 -20.15 -0.12 -6.87 16 21 C 0.10 1.63 10.45 85.65 0.89 2.53 16 22 N -0.28 -4.65 12.50 -56.28 -0.70 -5.36 16 23 N -0.43 -7.13 3.84 -363.01 -1.40 -8.53 16 24 C 0.50 5.18 6.37 127.77 0.81 5.99 16 25 F -0.19 -2.46 17.47 44.97 0.79 -1.68 16 26 F -0.19 -2.51 17.47 44.97 0.79 -1.73 16 27 C 0.14 2.98 11.19 84.28 0.94 3.92 16 28 C 0.13 4.65 4.43 86.87 0.39 5.04 16 29 C -0.10 -2.93 4.08 -8.74 -0.04 -2.96 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 32 H 0.37 20.62 5.36 -92.71 -0.50 20.13 16 33 H 0.03 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.24 7.40 -2.39 -0.02 1.22 16 37 H 0.11 1.07 6.75 -2.39 -0.02 1.06 16 38 H 0.10 1.19 6.74 -2.39 -0.02 1.17 16 39 H 0.24 2.09 4.47 -2.91 -0.01 2.08 16 40 H 0.21 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.05 2.16 6.45 -2.39 -0.02 2.15 16 43 H 0.04 1.72 7.99 -2.39 -0.02 1.70 16 Total: -1.00 -82.16 356.43 3.77 -78.38 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.57 Total: 24.62 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.74 Total: 11.69 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -6.07 Total: -134.67 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.07 Total: -25.85 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 1.57 Total: -3.40 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -82.16 3.77 -78.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026387708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.089 kcal (2) G-P(sol) polarization free energy of solvation -82.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds