Wall clock time and date at job start Tue Mar 31 2020 23:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46838 * 270.00122 * 3 2 1 5 5 H 1.48497 * 109.47313 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47163 * 150.00187 * 3 2 1 7 7 C 1.38816 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00181 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.48155 * 126.40756 * 0.02562 * 9 7 2 11 11 C 1.55289 * 107.04391 * 184.93083 * 10 9 7 12 12 C 1.53741 * 101.84026 * 22.48026 * 11 10 9 13 13 H 1.08992 * 111.31240 * 79.85286 * 12 11 10 14 14 C 1.52250 * 114.73590 * 207.25142 * 12 11 10 15 15 N 1.47719 * 106.36373 * 169.56922 * 14 12 11 16 16 C 1.34779 * 119.68155 * 127.92280 * 15 14 12 17 17 O 1.21606 * 120.00280 * 353.57973 * 16 15 14 18 18 C 1.47432 * 119.99940 * 173.58690 * 16 15 14 19 19 C 1.41284 * 126.41349 * 332.76073 * 18 16 15 20 20 N 1.30450 * 108.02459 * 179.85380 * 19 18 16 21 21 N 1.39935 * 108.89234 * 0.40787 * 20 19 18 22 22 C 1.46503 * 125.75250 * 179.73045 * 21 20 19 23 23 F 1.39900 * 109.47018 * 30.00530 * 22 21 20 24 24 F 1.39901 * 109.47056 * 150.00210 * 22 21 20 25 25 C 1.34260 * 108.49512 * 359.74015 * 21 20 19 26 26 C 1.46592 * 120.63750 * 307.93992 * 15 14 12 27 27 C 1.53956 * 110.57279 * 47.82447 * 26 15 14 28 28 C 1.45468 * 126.40314 * 179.71380 * 9 7 2 29 29 H 1.09001 * 109.26092 * 266.19140 * 28 9 7 30 30 H 0.96998 * 119.99582 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.91849 * 304.27969 * 10 9 7 32 32 H 1.08998 * 109.92149 * 65.57912 * 10 9 7 33 33 H 1.09003 * 110.95739 * 140.61651 * 11 10 9 34 34 H 1.08997 * 110.95189 * 264.33937 * 11 10 9 35 35 H 1.09002 * 110.06782 * 288.77762 * 14 12 11 36 36 H 1.08998 * 110.07446 * 50.24662 * 14 12 11 37 37 H 1.08004 * 125.98949 * 359.97438 * 19 18 16 38 38 H 1.09001 * 109.47378 * 270.00045 * 22 21 20 39 39 H 1.07998 * 126.29293 * 180.02562 * 25 21 20 40 40 H 1.08996 * 109.26124 * 168.11272 * 26 15 14 41 41 H 1.09004 * 109.25454 * 287.58071 * 26 15 14 42 42 H 1.09001 * 109.87831 * 68.41123 * 27 26 15 43 43 H 1.09004 * 109.87846 * 189.41504 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5533 -0.0005 11 6 -0.4342 -4.0740 0.1275 12 6 0.8677 -4.5887 0.7629 13 1 0.8836 -4.4054 1.8372 14 6 1.2004 -6.0404 0.4468 15 7 2.5816 -6.2635 0.9205 16 6 2.8474 -7.3019 1.7376 17 8 1.9375 -7.9798 2.1750 18 6 4.2413 -7.6159 2.1011 19 6 5.3924 -7.3347 1.3317 20 7 6.4333 -7.7619 1.9916 21 7 6.0035 -8.3370 3.1928 22 6 6.8679 -8.9382 4.2115 23 9 8.1145 -8.3033 4.1990 24 9 6.2795 -8.7855 5.4715 25 6 4.6655 -8.2452 3.2542 26 6 3.6660 -5.3661 0.5110 27 6 3.2471 -3.8953 0.6883 28 6 1.9077 -3.7211 -0.0048 29 1 1.9849 -4.0757 -1.0326 30 1 -0.4849 0.8401 0.0004 31 1 -0.5809 -2.0207 0.8458 32 1 -0.5624 -2.1741 -0.9341 33 1 -1.2862 -4.2559 0.7827 34 1 -0.5946 -4.5242 -0.8521 35 1 0.5132 -6.7044 0.9712 36 1 1.1394 -6.2127 -0.6278 37 1 5.4080 -6.8490 0.3671 38 1 6.9982 -9.9990 3.9975 39 1 4.0367 -8.5983 4.0581 40 1 4.5471 -5.5650 1.1210 41 1 3.9060 -5.5471 -0.5368 42 1 3.1533 -3.6619 1.7489 43 1 3.9881 -3.2409 0.2291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:52 Heat of formation + Delta-G solvation = -0.809401 kcal Electronic energy + Delta-G solvation = -29933.084281 eV Core-core repulsion = 25459.625971 eV Total energy + Delta-G solvation = -4473.458310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.85627 -47.96861 -41.84321 -39.90007 -38.08044 -35.44669 -33.44593 -32.58059 -31.55809 -30.87909 -29.52896 -28.27938 -26.58683 -25.08883 -23.95226 -22.64067 -22.10429 -21.65711 -20.11370 -19.91691 -19.41156 -18.65720 -18.51720 -17.88455 -16.77046 -16.12615 -15.94959 -15.59396 -15.36930 -14.95824 -14.73564 -14.72123 -14.39419 -14.27966 -14.06356 -13.88612 -13.64021 -13.31566 -13.09796 -12.96135 -12.84814 -12.49671 -12.34951 -11.64140 -11.55448 -11.47763 -11.37204 -10.85890 -10.79071 -10.73407 -10.23844 -10.15996 -10.07983 -9.90774 -9.75486 -9.62231 -9.45521 -9.19099 -8.62507 -8.49311 -6.83823 -5.71763 -3.04894 0.99660 1.29643 1.82414 2.91996 2.94598 3.26723 3.39489 3.44549 3.46148 3.46477 3.88330 4.20815 4.38395 4.49062 4.63825 4.91626 5.02476 5.08290 5.15463 5.30231 5.35016 5.53921 5.56159 5.61487 5.80712 5.85631 5.90207 6.02834 6.03505 6.15357 6.18539 6.23196 6.36591 6.50542 6.62353 6.64631 6.83470 6.96842 7.07359 7.48050 7.55503 7.61948 7.81212 8.22311 8.24454 9.19282 9.82967 10.50989 11.40761 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002777 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.844247 B =10079.488326 C =11258.779340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.128 3.872 15 N -0.599 5.599 16 C 0.591 3.409 17 O -0.550 6.550 18 C -0.269 4.269 19 C 0.092 3.908 20 N -0.275 5.275 21 N -0.433 5.433 22 C 0.512 3.488 23 F -0.170 7.170 24 F -0.179 7.179 25 C 0.137 3.863 26 C 0.100 3.900 27 C -0.130 4.130 28 C 0.168 3.832 29 H 0.022 0.978 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.206 0.794 38 H 0.160 0.840 39 H 0.195 0.805 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -20.120 5.142 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.006 3.994 15 N -0.331 5.331 16 C 0.379 3.621 17 O -0.429 6.429 18 C -0.284 4.284 19 C -0.097 4.097 20 N -0.093 5.093 21 N -0.222 5.222 22 C 0.379 3.621 23 F -0.151 7.151 24 F -0.160 7.160 25 C -0.010 4.010 26 C -0.023 4.023 27 C -0.169 4.169 28 C 0.059 3.941 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.222 0.778 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.963 -20.376 5.533 24.267 hybrid contribution -0.320 1.309 0.135 1.355 sum 11.643 -19.066 5.668 23.048 Atomic orbital electron populations 1.69941 1.04887 1.25019 1.57028 1.24792 0.95673 0.97626 1.02356 0.86159 0.78603 0.83703 0.77541 1.21643 1.21740 1.20726 1.18991 0.90346 0.82328 1.43707 0.90383 1.44207 1.01672 0.99481 1.86603 1.21530 0.83924 0.88336 1.00932 1.22719 0.95825 0.99661 0.99309 1.22694 0.97823 0.93285 1.00640 0.90182 1.21648 0.81310 0.97304 0.99119 1.48067 1.09982 1.27042 1.48020 1.17216 0.86501 0.80225 0.78117 1.90762 1.46535 1.51306 1.54287 1.20434 0.95154 1.14200 0.98564 1.24615 0.88683 0.96208 1.00194 1.77349 1.22894 1.16249 0.92802 1.49769 1.05963 1.49118 1.17391 1.21341 0.72900 0.94781 0.73122 1.93146 1.41195 1.84960 1.95786 1.93155 1.84404 1.96943 1.41491 1.22918 0.83731 0.95215 0.99101 1.22221 0.89457 0.90649 0.99995 1.21950 0.99496 0.93361 1.02064 1.20759 0.91070 0.87202 0.95030 0.96071 0.93771 0.92732 0.94408 0.92067 0.92323 0.89111 0.91176 0.77813 0.82374 0.78858 0.89495 0.91425 0.91382 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.44 55.49 0.58 -26.20 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 8 H 0.08 2.00 7.21 -52.49 -0.38 1.63 16 9 N -0.60 -14.58 3.35 -162.73 -0.54 -15.12 16 10 C 0.18 4.20 5.45 -1.92 -0.01 4.19 16 11 C -0.14 -2.47 6.53 -25.13 -0.16 -2.64 16 12 C -0.12 -2.15 2.86 -89.19 -0.26 -2.41 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.87 5.97 -3.76 -0.02 1.85 16 15 N -0.60 -8.29 3.00 -173.75 -0.52 -8.81 16 16 C 0.59 8.40 7.60 -12.52 -0.10 8.30 16 17 O -0.55 -9.35 16.36 5.27 0.09 -9.26 16 18 C -0.27 -3.12 5.53 -105.07 -0.58 -3.70 16 19 C 0.09 0.94 9.55 -16.98 -0.16 0.78 16 20 N -0.28 -3.00 12.32 30.86 0.38 -2.62 16 21 N -0.43 -4.01 3.94 -66.09 -0.26 -4.27 16 22 C 0.51 3.16 6.62 59.85 0.40 3.56 16 23 F -0.17 -1.44 17.35 2.25 0.04 -1.40 16 24 F -0.18 -1.23 17.00 2.25 0.04 -1.19 16 25 C 0.14 1.34 10.94 -16.56 -0.18 1.16 16 26 C 0.10 1.24 4.89 -3.49 -0.02 1.22 16 27 C -0.13 -2.12 5.48 -26.84 -0.15 -2.26 16 28 C 0.17 3.23 2.59 -67.66 -0.18 3.06 16 29 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 1.45 7.21 -51.92 -0.37 1.07 16 32 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.09 1.37 6.98 -51.93 -0.36 1.01 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.21 1.60 6.24 -52.48 -0.33 1.27 16 38 H 0.16 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.09 0.95 4.34 -51.93 -0.23 0.72 16 41 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 42 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -33.85 352.46 -6.96 -40.81 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.39 Total: -0.65 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.66 Total: 6.58 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.37 Total: -57.02 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.85 -6.96 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.005 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds