Wall clock time and date at job start Tue Mar 31 2020 23:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46838 * 270.00122 * 3 2 1 5 5 H 1.48497 * 109.47313 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47163 * 150.00187 * 3 2 1 7 7 C 1.38816 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00181 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.48155 * 126.40756 * 0.02562 * 9 7 2 11 11 C 1.55289 * 107.04391 * 184.93083 * 10 9 7 12 12 C 1.53741 * 101.84026 * 22.48026 * 11 10 9 13 13 H 1.08992 * 111.31240 * 79.85286 * 12 11 10 14 14 C 1.52250 * 114.73590 * 207.25142 * 12 11 10 15 15 N 1.47719 * 106.36373 * 169.56922 * 14 12 11 16 16 C 1.34779 * 119.68155 * 127.92280 * 15 14 12 17 17 O 1.21606 * 120.00280 * 353.57973 * 16 15 14 18 18 C 1.47432 * 119.99940 * 173.58690 * 16 15 14 19 19 C 1.41284 * 126.41349 * 332.76073 * 18 16 15 20 20 N 1.30450 * 108.02459 * 179.85380 * 19 18 16 21 21 N 1.39935 * 108.89234 * 0.40787 * 20 19 18 22 22 C 1.46503 * 125.75250 * 179.73045 * 21 20 19 23 23 F 1.39900 * 109.47018 * 30.00530 * 22 21 20 24 24 F 1.39901 * 109.47056 * 150.00210 * 22 21 20 25 25 C 1.34260 * 108.49512 * 359.74015 * 21 20 19 26 26 C 1.46592 * 120.63750 * 307.93992 * 15 14 12 27 27 C 1.53956 * 110.57279 * 47.82447 * 26 15 14 28 28 C 1.45468 * 126.40314 * 179.71380 * 9 7 2 29 29 H 1.09001 * 109.26092 * 266.19140 * 28 9 7 30 30 H 0.96998 * 119.99582 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.91849 * 304.27969 * 10 9 7 32 32 H 1.08998 * 109.92149 * 65.57912 * 10 9 7 33 33 H 1.09003 * 110.95739 * 140.61651 * 11 10 9 34 34 H 1.08997 * 110.95189 * 264.33937 * 11 10 9 35 35 H 1.09002 * 110.06782 * 288.77762 * 14 12 11 36 36 H 1.08998 * 110.07446 * 50.24662 * 14 12 11 37 37 H 1.08004 * 125.98949 * 359.97438 * 19 18 16 38 38 H 1.09001 * 109.47378 * 270.00045 * 22 21 20 39 39 H 1.07998 * 126.29293 * 180.02562 * 25 21 20 40 40 H 1.08996 * 109.26124 * 168.11272 * 26 15 14 41 41 H 1.09004 * 109.25454 * 287.58071 * 26 15 14 42 42 H 1.09001 * 109.87831 * 68.41123 * 27 26 15 43 43 H 1.09004 * 109.87846 * 189.41504 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5533 -0.0005 11 6 -0.4342 -4.0740 0.1275 12 6 0.8677 -4.5887 0.7629 13 1 0.8836 -4.4054 1.8372 14 6 1.2004 -6.0404 0.4468 15 7 2.5816 -6.2635 0.9205 16 6 2.8474 -7.3019 1.7376 17 8 1.9375 -7.9798 2.1750 18 6 4.2413 -7.6159 2.1011 19 6 5.3924 -7.3347 1.3317 20 7 6.4333 -7.7619 1.9916 21 7 6.0035 -8.3370 3.1928 22 6 6.8679 -8.9382 4.2115 23 9 8.1145 -8.3033 4.1990 24 9 6.2795 -8.7855 5.4715 25 6 4.6655 -8.2452 3.2542 26 6 3.6660 -5.3661 0.5110 27 6 3.2471 -3.8953 0.6883 28 6 1.9077 -3.7211 -0.0048 29 1 1.9849 -4.0757 -1.0326 30 1 -0.4849 0.8401 0.0004 31 1 -0.5809 -2.0207 0.8458 32 1 -0.5624 -2.1741 -0.9341 33 1 -1.2862 -4.2559 0.7827 34 1 -0.5946 -4.5242 -0.8521 35 1 0.5132 -6.7044 0.9712 36 1 1.1394 -6.2127 -0.6278 37 1 5.4080 -6.8490 0.3671 38 1 6.9982 -9.9990 3.9975 39 1 4.0367 -8.5983 4.0581 40 1 4.5471 -5.5650 1.1210 41 1 3.9060 -5.5471 -0.5368 42 1 3.1533 -3.6619 1.7489 43 1 3.9881 -3.2409 0.2291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036855188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:51 Heat of formation + Delta-G solvation = -23.194517 kcal Electronic energy + Delta-G solvation = -29934.054973 eV Core-core repulsion = 25459.625971 eV Total energy + Delta-G solvation = -4474.429002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.37429 -48.50342 -42.63740 -41.11048 -39.45372 -36.81693 -34.68826 -33.88533 -32.99018 -31.86651 -31.03167 -29.71392 -27.32754 -26.72995 -25.35178 -23.89811 -23.10176 -22.46358 -21.80947 -21.19507 -20.48132 -19.43219 -19.12177 -18.61943 -18.29925 -17.35175 -17.01575 -16.88768 -16.45637 -16.21560 -15.87434 -15.73210 -15.45885 -15.27790 -15.09673 -14.84019 -14.73791 -14.47556 -14.29070 -14.15386 -13.88376 -13.78716 -13.36266 -13.25922 -13.05050 -12.97612 -12.68400 -12.43243 -12.32939 -12.09225 -11.98189 -11.72999 -11.58753 -11.48627 -11.01876 -10.98843 -10.78538 -10.68412 -10.04856 -9.61309 -8.84316 -7.81354 -5.15239 0.24502 0.69215 1.00213 1.46983 1.48337 1.56481 1.90512 2.27100 2.52302 2.54371 2.83745 3.37748 3.45366 3.51701 3.56239 3.66725 3.80774 3.90178 3.94522 4.05697 4.20078 4.24569 4.26752 4.38885 4.49121 4.55182 4.69667 4.76222 4.83934 4.87838 4.94715 5.08390 5.12072 5.17656 5.25569 5.32914 5.49726 5.58421 5.59236 5.70152 5.79851 6.22855 6.23588 6.41427 7.11999 7.15217 7.82705 8.51349 9.30611 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002777 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.844247 B =10079.488326 C =11258.779340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.227 4.227 8 H 0.088 0.912 9 N -0.617 5.617 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.110 4.110 13 H 0.058 0.942 14 C 0.137 3.863 15 N -0.602 5.602 16 C 0.594 3.406 17 O -0.583 6.583 18 C -0.294 4.294 19 C 0.098 3.902 20 N -0.296 5.296 21 N -0.432 5.432 22 C 0.506 3.494 23 F -0.184 7.184 24 F -0.183 7.183 25 C 0.147 3.853 26 C 0.110 3.890 27 C -0.124 4.124 28 C 0.157 3.843 29 H 0.031 0.969 30 H 0.244 0.756 31 H 0.014 0.986 32 H 0.004 0.996 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.212 0.788 39 H 0.211 0.789 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.046 0.954 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.295 -22.342 4.993 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.356 4.356 8 H 0.106 0.894 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.130 4.130 13 H 0.077 0.923 14 C 0.015 3.985 15 N -0.333 5.333 16 C 0.383 3.617 17 O -0.465 6.465 18 C -0.308 4.308 19 C -0.091 4.091 20 N -0.114 5.114 21 N -0.221 5.221 22 C 0.374 3.626 23 F -0.166 7.166 24 F -0.165 7.165 25 C -0.001 4.001 26 C -0.013 4.013 27 C -0.163 4.163 28 C 0.050 3.950 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.022 0.978 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.242 0.758 38 H 0.228 0.772 39 H 0.228 0.772 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.232 -22.633 5.388 27.274 hybrid contribution -0.980 1.957 0.240 2.202 sum 13.252 -20.677 5.627 25.195 Atomic orbital electron populations 1.70171 1.06342 1.24985 1.58965 1.25615 0.96504 1.00946 1.03350 0.85149 0.77709 0.79561 0.77392 1.21372 1.22682 1.19236 1.19416 0.91051 0.83431 1.41712 0.89429 1.44505 1.02248 1.00956 1.86411 1.21299 0.83792 0.91764 0.97472 1.22586 0.96912 0.95405 1.01098 1.22520 0.96522 0.95060 0.98932 0.92348 1.21517 0.82037 0.94649 1.00327 1.48091 1.09834 1.27282 1.48056 1.17503 0.87236 0.79680 0.77245 1.90743 1.47812 1.52453 1.55446 1.20295 0.94121 1.16372 1.00020 1.24896 0.87790 0.95707 1.00700 1.77317 1.23445 1.16972 0.93637 1.50060 1.06117 1.48455 1.17433 1.22235 0.71635 0.96432 0.72252 1.93117 1.42148 1.85514 1.95794 1.93147 1.84435 1.97030 1.41867 1.23206 0.84222 0.93769 0.98873 1.22270 0.89342 0.87412 1.02255 1.21878 0.97795 0.96446 1.00210 1.21024 0.93082 0.84891 0.95960 0.95129 0.94692 0.96785 0.97763 0.90626 0.90005 0.89300 0.89118 0.75794 0.77244 0.77202 0.87561 0.88429 0.93488 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 10.44 21.65 0.23 -57.72 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.23 -12.35 9.88 84.03 0.83 -11.52 16 8 H 0.09 4.47 7.21 -2.91 -0.02 4.45 16 9 N -0.62 -30.70 3.35 -668.75 -2.24 -32.94 16 10 C 0.18 8.95 5.45 86.85 0.47 9.42 16 11 C -0.12 -4.35 6.53 31.63 0.21 -4.14 16 12 C -0.11 -3.72 2.86 -9.87 -0.03 -3.75 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C 0.14 3.70 5.97 85.90 0.51 4.21 16 15 N -0.60 -15.16 3.00 -821.88 -2.47 -17.63 16 16 C 0.59 15.63 7.60 86.66 0.66 16.28 16 17 O -0.58 -18.98 16.36 -4.05 -0.07 -19.05 16 18 C -0.29 -6.08 5.53 -20.15 -0.11 -6.19 16 19 C 0.10 1.71 9.55 85.65 0.82 2.52 16 20 N -0.30 -5.65 12.32 -56.28 -0.69 -6.34 16 21 N -0.43 -6.81 3.94 -363.01 -1.43 -8.24 16 22 C 0.51 4.79 6.62 127.77 0.85 5.63 16 23 F -0.18 -2.73 17.35 44.97 0.78 -1.95 16 24 F -0.18 -2.09 17.00 44.97 0.76 -1.32 16 25 C 0.15 2.52 10.94 84.28 0.92 3.44 16 26 C 0.11 2.39 4.89 86.68 0.42 2.81 16 27 C -0.12 -3.87 5.48 30.53 0.17 -3.71 16 28 C 0.16 5.91 2.59 45.72 0.12 6.03 16 29 H 0.03 1.14 7.94 -2.39 -0.02 1.12 16 30 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.01 0.78 7.21 -2.38 -0.02 0.77 16 32 H 0.00 0.23 7.77 -2.39 -0.02 0.21 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 35 H 0.09 2.51 6.98 -2.39 -0.02 2.49 16 36 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 37 H 0.23 2.66 6.24 -2.91 -0.02 2.64 16 38 H 0.21 -0.17 8.14 -2.39 -0.02 -0.18 16 39 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.11 1.97 4.34 -2.39 -0.01 1.96 16 41 H 0.10 1.63 8.02 -2.39 -0.02 1.61 16 42 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 43 H 0.08 2.39 7.62 -2.39 -0.02 2.37 16 Total: -1.00 -76.71 352.46 4.26 -72.45 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.05 Total: 7.54 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 6.30 Total: 17.44 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.60 Total: -122.86 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.07 Total: -19.05 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 1.54 Total: -3.27 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -76.71 4.26 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.257 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds