Wall clock time and date at job start Tue Mar 31 2020 23:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47256 * 2 1 4 4 N 1.34239 * 126.28252 * 265.16837 * 3 2 1 5 5 H 0.97003 * 125.74087 * 359.96865 * 4 3 2 6 6 N 1.39933 * 108.52426 * 180.22903 * 4 3 2 7 7 C 1.30525 * 108.89388 * 359.77099 * 6 4 3 8 8 Cl 1.73598 * 126.00716 * 179.97438 * 7 6 4 9 9 C 1.38067 * 126.28418 * 85.00468 * 3 2 1 10 10 C 1.47393 * 126.41983 * 0.03597 * 9 3 2 11 11 O 1.21602 * 119.99787 * 269.71254 * 10 9 3 12 12 N 1.34775 * 119.99787 * 89.70931 * 10 9 3 13 13 C 1.46496 * 119.99903 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.26082 * 35.32181 * 13 12 10 15 15 C 1.50880 * 109.36854 * 154.99961 * 13 12 10 16 16 C 1.52571 * 109.36241 * 212.07846 * 15 13 12 17 17 C 1.47092 * 114.32859 * 274.99307 * 16 15 13 18 18 C 1.54863 * 110.32415 * 62.79486 * 17 16 15 19 19 N 1.44572 * 109.60277 * 288.73768 * 18 17 16 20 20 C 1.36933 * 118.64485 * 270.70398 * 19 18 17 21 21 H 1.07999 * 120.00300 * 31.94500 * 20 19 18 22 22 C 1.38816 * 120.00476 * 211.94986 * 20 19 18 23 23 N 1.31613 * 120.00210 * 199.77428 * 22 20 19 24 24 Si 1.86805 * 119.99611 * 19.76800 * 22 20 19 25 25 H 1.48498 * 109.47209 * 275.16671 * 24 22 20 26 26 H 1.48495 * 109.46934 * 155.16621 * 24 22 20 27 27 H 1.48504 * 109.46983 * 35.16878 * 24 22 20 28 28 C 1.47609 * 122.71367 * 90.98465 * 19 18 17 29 29 H 1.08993 * 109.47164 * 59.99369 * 1 2 3 30 30 H 1.08997 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46428 * 299.99850 * 1 2 3 32 32 H 1.09009 * 109.46428 * 240.00150 * 2 1 3 33 33 H 1.08993 * 109.47164 * 120.00631 * 2 1 3 34 34 H 0.97005 * 120.00231 * 0.02562 * 12 10 9 35 35 H 1.09007 * 109.48760 * 92.11468 * 15 13 12 36 36 H 1.08997 * 109.48835 * 332.04617 * 15 13 12 37 37 H 1.08997 * 108.51372 * 153.73362 * 16 15 13 38 38 H 1.09002 * 108.50993 * 36.24344 * 16 15 13 39 39 H 1.09000 * 109.32673 * 302.53622 * 17 16 15 40 40 H 1.08994 * 109.18876 * 182.97622 * 17 16 15 41 41 H 1.08997 * 109.45174 * 168.69421 * 18 17 16 42 42 H 1.09009 * 109.42394 * 48.76388 * 18 17 16 43 43 H 0.97006 * 119.99805 * 179.97438 * 23 22 20 44 44 H 1.08996 * 108.94750 * 78.29379 * 28 19 18 45 45 H 1.08998 * 108.94823 * 196.92378 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3831 2.1393 -1.0783 5 1 2.3570 1.8310 -1.9976 6 7 2.7984 3.4059 -0.6525 7 6 2.7018 3.4676 0.6477 8 17 3.1029 4.8364 1.6371 9 6 2.2134 2.2234 1.1087 10 6 1.9525 1.8508 2.5107 11 8 0.8571 2.0512 2.9993 12 7 2.9279 1.2881 3.2511 13 6 2.6688 0.9183 4.6448 14 1 1.6402 0.5702 4.7391 15 6 3.6106 -0.1878 5.0524 16 6 2.9202 -1.0905 6.0703 17 6 3.0162 -0.6202 7.4607 18 6 2.3056 0.7469 7.6165 19 7 3.0817 1.7746 6.9595 20 6 4.0470 2.4283 7.6778 21 1 4.5804 1.9107 8.4613 22 6 4.3399 3.7562 7.3989 23 7 5.4874 4.2722 7.7854 24 14 3.1055 4.8108 6.4750 25 1 3.2788 4.6103 5.0138 26 1 3.3285 6.2406 6.8083 27 1 1.7280 4.4198 6.8684 28 6 2.8723 2.1525 5.5480 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8018 1.1285 2.8615 35 1 4.5070 0.2436 5.4979 36 1 3.8856 -0.7730 4.1749 37 1 3.3645 -2.0839 6.0095 38 1 1.8662 -1.1697 5.8039 39 1 4.0661 -0.5142 7.7340 40 1 2.5441 -1.3494 8.1190 41 1 2.2081 0.9868 8.6753 42 1 1.3154 0.6944 7.1636 43 1 5.6922 5.2000 7.5902 44 1 1.9938 2.7940 5.4800 45 1 3.7422 2.7081 5.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034239607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:39 Heat of formation + Delta-G solvation = 46.485724 kcal Electronic energy + Delta-G solvation = -28719.240889 eV Core-core repulsion = 24799.630130 eV Total energy + Delta-G solvation = -3919.610760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79625 -39.44807 -37.72518 -36.89745 -34.50846 -34.48898 -33.57539 -31.80659 -31.21351 -30.49065 -29.32039 -26.18387 -24.93044 -24.50240 -23.26417 -22.11864 -21.89047 -20.32189 -19.72902 -19.40810 -18.09117 -16.71690 -16.57097 -16.15456 -15.57736 -15.42977 -15.19097 -14.97705 -14.55786 -14.30707 -14.03826 -13.84780 -13.39617 -13.11035 -13.04269 -12.95829 -12.75912 -12.26571 -12.06039 -12.03147 -11.72899 -11.66895 -11.55878 -11.46785 -11.35119 -10.89258 -10.57895 -10.52421 -10.28993 -10.07303 -9.94530 -9.85762 -9.77961 -9.67237 -9.40990 -8.99892 -8.73813 -8.46616 -6.80751 -5.93462 -3.33536 1.25283 1.33769 1.97768 2.60507 2.71726 3.42893 3.47956 3.56291 3.64024 4.10106 4.39948 4.59684 4.69533 4.78959 4.91990 5.05239 5.10916 5.21016 5.23547 5.29427 5.45054 5.47183 5.54978 5.58540 5.65675 5.77461 5.81525 5.89502 6.00417 6.22853 6.28717 6.41669 6.47712 6.55743 6.60472 6.66996 6.69184 6.80977 6.85730 6.95992 7.01066 7.08329 7.73747 8.08501 8.41188 8.42490 9.05660 9.78483 10.12455 11.22138 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.004825 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.797605 B = 5801.621373 C = 7570.135949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 C 0.143 3.857 4 N -0.448 5.448 5 H 0.447 0.553 6 N -0.277 5.277 7 C 0.158 3.842 8 Cl 0.030 6.970 9 C -0.263 4.263 10 C 0.594 3.406 11 O -0.526 6.526 12 N -0.710 5.710 13 C 0.131 3.869 14 H 0.081 0.919 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.146 4.146 18 C 0.155 3.845 19 N -0.598 5.598 20 C -0.269 4.269 21 H 0.084 0.916 22 C 0.033 3.967 23 N -0.906 5.906 24 Si 0.877 3.123 25 H -0.281 1.281 26 H -0.305 1.305 27 H -0.274 1.274 28 C 0.124 3.876 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 -11.579 -18.401 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C 0.011 3.989 4 N -0.157 5.157 5 H 0.293 0.707 6 N -0.102 5.102 7 C -0.034 4.034 8 Cl 0.057 6.943 9 C -0.279 4.279 10 C 0.377 3.623 11 O -0.402 6.402 12 N -0.361 5.361 13 C 0.026 3.974 14 H 0.099 0.901 15 C -0.155 4.155 16 C -0.137 4.137 17 C -0.187 4.187 18 C 0.027 3.973 19 N -0.321 5.321 20 C -0.397 4.397 21 H 0.101 0.899 22 C -0.166 4.166 23 N -0.548 5.548 24 Si 0.707 3.293 25 H -0.207 1.207 26 H -0.234 1.234 27 H -0.200 1.200 28 C -0.002 4.002 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.233 0.767 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.491 -10.502 -18.943 22.611 hybrid contribution -0.260 0.423 -0.519 0.719 sum -6.751 -10.079 -19.462 22.934 Atomic orbital electron populations 1.21784 0.92886 1.02862 1.03375 1.20388 0.97521 0.87858 1.04750 1.21423 0.96302 0.95145 0.86077 1.45825 1.51583 1.09412 1.08877 0.70732 1.77173 1.23354 0.98861 1.10839 1.22693 0.99482 0.90662 0.90595 1.98477 1.91795 1.39574 1.64405 1.19883 1.18530 0.94528 0.94938 1.17097 0.84427 0.77107 0.83644 1.90795 1.23828 1.52997 1.72572 1.46204 1.14705 1.62295 1.12884 1.21630 0.99994 0.96580 0.79213 0.90054 1.21285 1.00173 0.95726 0.98303 1.20230 0.99733 0.97772 0.95930 1.21448 1.02590 0.99176 0.95445 1.20807 0.92237 0.87369 0.96854 1.43836 1.41158 1.41990 1.05071 1.18881 1.11468 0.92610 1.16741 0.89887 1.25366 0.96515 0.96651 0.98101 1.69840 1.20998 1.14661 1.49279 0.87106 0.83322 0.79148 0.79737 1.20732 1.23355 1.19969 1.22077 0.99974 0.94005 0.84162 0.92517 0.91198 0.90944 0.89687 0.88379 0.76696 0.89537 0.92592 0.93394 0.93189 0.91589 0.93124 0.92653 0.94718 0.92807 0.95661 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.07 -0.46 6.27 -27.88 -0.17 -0.63 16 3 C 0.14 1.45 6.55 -81.61 -0.53 0.92 16 4 N -0.45 -4.12 7.28 33.86 0.25 -3.87 16 5 H 0.45 2.25 8.96 -182.72 -1.64 0.61 16 6 N -0.28 -3.65 12.64 33.17 0.42 -3.24 16 7 C 0.16 2.39 7.89 -16.91 -0.13 2.25 16 8 Cl 0.03 0.49 29.19 -51.86 -1.51 -1.02 16 9 C -0.26 -3.74 5.88 -105.03 -0.62 -4.36 16 10 C 0.59 9.88 7.22 -12.53 -0.09 9.79 16 11 O -0.53 -10.66 16.77 5.28 0.09 -10.57 16 12 N -0.71 -10.97 4.98 -55.27 -0.28 -11.25 16 13 C 0.13 2.29 2.27 -68.32 -0.15 2.13 16 14 H 0.08 1.47 6.75 -51.93 -0.35 1.12 16 15 C -0.12 -1.79 5.07 -28.01 -0.14 -1.93 16 16 C -0.10 -1.43 5.15 -29.79 -0.15 -1.58 16 17 C -0.15 -2.40 5.74 -28.58 -0.16 -2.57 16 18 C 0.15 3.04 5.65 -4.09 -0.02 3.02 16 19 N -0.60 -14.01 1.97 -171.88 -0.34 -14.34 16 20 C -0.27 -7.39 9.81 -15.06 -0.15 -7.54 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.97 5.13 -17.43 -0.09 0.88 16 23 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 24 Si 0.88 23.43 24.11 -169.99 -4.10 19.33 16 25 H -0.28 -7.26 6.47 56.52 0.37 -6.89 16 26 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 27 H -0.27 -7.47 7.01 56.52 0.40 -7.07 16 28 C 0.12 2.78 3.58 -2.76 -0.01 2.77 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 33 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.40 5.19 8.53 -40.82 -0.35 4.84 16 35 H 0.09 1.57 7.49 -51.93 -0.39 1.18 16 36 H 0.06 0.70 7.94 -51.93 -0.41 0.28 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.11 7.99 -51.93 -0.41 0.70 16 42 H 0.03 0.65 8.06 -51.92 -0.42 0.23 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.03 0.64 6.11 -51.93 -0.32 0.32 16 45 H 0.07 1.76 5.65 -51.93 -0.29 1.47 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -34.53 373.88 -9.07 -43.60 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.94 Total: 0.28 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.07 Total: 2.41 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.83 Total: -59.67 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.10 Total: 19.33 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.51 Total: -1.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.53 -9.07 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034239607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.091 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds