Wall clock time and date at job start Tue Mar 31 2020 23:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47256 * 2 1 4 4 N 1.34239 * 126.28252 * 265.16837 * 3 2 1 5 5 H 0.97003 * 125.74087 * 359.96865 * 4 3 2 6 6 N 1.39933 * 108.52426 * 180.22903 * 4 3 2 7 7 C 1.30525 * 108.89388 * 359.77099 * 6 4 3 8 8 Cl 1.73598 * 126.00716 * 179.97438 * 7 6 4 9 9 C 1.38067 * 126.28418 * 85.00468 * 3 2 1 10 10 C 1.47393 * 126.41983 * 0.03597 * 9 3 2 11 11 O 1.21602 * 119.99787 * 269.71254 * 10 9 3 12 12 N 1.34775 * 119.99787 * 89.70931 * 10 9 3 13 13 C 1.46496 * 119.99903 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.26082 * 35.32181 * 13 12 10 15 15 C 1.50880 * 109.36854 * 154.99961 * 13 12 10 16 16 C 1.52571 * 109.36241 * 212.07846 * 15 13 12 17 17 C 1.47092 * 114.32859 * 274.99307 * 16 15 13 18 18 C 1.54863 * 110.32415 * 62.79486 * 17 16 15 19 19 N 1.44572 * 109.60277 * 288.73768 * 18 17 16 20 20 C 1.36933 * 118.64485 * 270.70398 * 19 18 17 21 21 H 1.07999 * 120.00300 * 31.94500 * 20 19 18 22 22 C 1.38816 * 120.00476 * 211.94986 * 20 19 18 23 23 N 1.31613 * 120.00210 * 199.77428 * 22 20 19 24 24 Si 1.86805 * 119.99611 * 19.76800 * 22 20 19 25 25 H 1.48498 * 109.47209 * 275.16671 * 24 22 20 26 26 H 1.48495 * 109.46934 * 155.16621 * 24 22 20 27 27 H 1.48504 * 109.46983 * 35.16878 * 24 22 20 28 28 C 1.47609 * 122.71367 * 90.98465 * 19 18 17 29 29 H 1.08993 * 109.47164 * 59.99369 * 1 2 3 30 30 H 1.08997 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46428 * 299.99850 * 1 2 3 32 32 H 1.09009 * 109.46428 * 240.00150 * 2 1 3 33 33 H 1.08993 * 109.47164 * 120.00631 * 2 1 3 34 34 H 0.97005 * 120.00231 * 0.02562 * 12 10 9 35 35 H 1.09007 * 109.48760 * 92.11468 * 15 13 12 36 36 H 1.08997 * 109.48835 * 332.04617 * 15 13 12 37 37 H 1.08997 * 108.51372 * 153.73362 * 16 15 13 38 38 H 1.09002 * 108.50993 * 36.24344 * 16 15 13 39 39 H 1.09000 * 109.32673 * 302.53622 * 17 16 15 40 40 H 1.08994 * 109.18876 * 182.97622 * 17 16 15 41 41 H 1.08997 * 109.45174 * 168.69421 * 18 17 16 42 42 H 1.09009 * 109.42394 * 48.76388 * 18 17 16 43 43 H 0.97006 * 119.99805 * 179.97438 * 23 22 20 44 44 H 1.08996 * 108.94750 * 78.29379 * 28 19 18 45 45 H 1.08998 * 108.94823 * 196.92378 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3831 2.1393 -1.0783 5 1 2.3570 1.8310 -1.9976 6 7 2.7984 3.4059 -0.6525 7 6 2.7018 3.4676 0.6477 8 17 3.1029 4.8364 1.6371 9 6 2.2134 2.2234 1.1087 10 6 1.9525 1.8508 2.5107 11 8 0.8571 2.0512 2.9993 12 7 2.9279 1.2881 3.2511 13 6 2.6688 0.9183 4.6448 14 1 1.6402 0.5702 4.7391 15 6 3.6106 -0.1878 5.0524 16 6 2.9202 -1.0905 6.0703 17 6 3.0162 -0.6202 7.4607 18 6 2.3056 0.7469 7.6165 19 7 3.0817 1.7746 6.9595 20 6 4.0470 2.4283 7.6778 21 1 4.5804 1.9107 8.4613 22 6 4.3399 3.7562 7.3989 23 7 5.4874 4.2722 7.7854 24 14 3.1055 4.8108 6.4750 25 1 3.2788 4.6103 5.0138 26 1 3.3285 6.2406 6.8083 27 1 1.7280 4.4198 6.8684 28 6 2.8723 2.1525 5.5480 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8018 1.1285 2.8615 35 1 4.5070 0.2436 5.4979 36 1 3.8856 -0.7730 4.1749 37 1 3.3645 -2.0839 6.0095 38 1 1.8662 -1.1697 5.8039 39 1 4.0661 -0.5142 7.7340 40 1 2.5441 -1.3494 8.1190 41 1 2.2081 0.9868 8.6753 42 1 1.3154 0.6944 7.1636 43 1 5.6922 5.2000 7.5902 44 1 1.9938 2.7940 5.4800 45 1 3.7422 2.7081 5.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034239607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:38 Heat of formation + Delta-G solvation = 21.350876 kcal Electronic energy + Delta-G solvation = -28720.330818 eV Core-core repulsion = 24799.630130 eV Total energy + Delta-G solvation = -3920.700688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.76644 -40.82767 -39.23109 -38.07740 -36.10057 -35.20175 -35.16679 -33.27252 -32.87571 -31.67923 -30.35373 -28.00295 -26.43815 -25.48709 -24.63197 -23.31950 -22.98081 -21.65642 -21.33011 -20.63240 -19.06252 -18.69222 -17.70410 -17.67441 -16.97951 -16.54749 -16.43330 -16.26193 -15.93997 -15.75253 -15.26112 -14.99071 -14.81441 -14.57102 -14.44613 -14.43970 -13.81324 -13.73759 -13.48720 -13.26582 -13.14881 -13.05129 -12.97964 -12.44455 -12.38798 -12.29522 -12.21481 -11.99624 -11.87095 -11.75499 -11.59432 -11.39870 -11.15235 -11.11078 -10.71348 -10.66347 -10.12955 -9.99612 -8.79792 -8.22171 -5.55231 0.27585 0.36443 0.89078 1.25028 1.33213 1.39816 1.42727 1.77922 2.24361 2.36137 3.04982 3.34261 3.40742 3.62456 3.80636 3.83616 3.95909 4.07125 4.21920 4.25030 4.32391 4.38399 4.38575 4.49968 4.52536 4.73326 4.78233 4.81244 4.92869 4.97038 4.99279 5.03978 5.06762 5.31266 5.32523 5.34045 5.39278 5.43833 5.56568 5.70260 5.89814 5.91891 6.16057 6.16906 6.49817 6.97874 7.16440 7.65742 8.01667 8.97682 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.004825 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.797605 B = 5801.621373 C = 7570.135949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C 0.175 3.825 4 N -0.421 5.421 5 H 0.468 0.532 6 N -0.290 5.290 7 C 0.142 3.858 8 Cl 0.001 6.999 9 C -0.298 4.298 10 C 0.599 3.401 11 O -0.568 6.568 12 N -0.701 5.701 13 C 0.146 3.854 14 H 0.082 0.918 15 C -0.110 4.110 16 C -0.100 4.100 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.606 5.606 20 C -0.244 4.244 21 H 0.061 0.939 22 C -0.011 4.011 23 N -0.946 5.946 24 Si 0.924 3.076 25 H -0.275 1.275 26 H -0.312 1.312 27 H -0.284 1.284 28 C 0.128 3.872 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.412 0.588 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.260 0.740 44 H -0.004 1.004 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 -15.233 -21.235 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 C 0.041 3.959 4 N -0.133 5.133 5 H 0.319 0.681 6 N -0.116 5.116 7 C -0.050 4.050 8 Cl 0.029 6.971 9 C -0.314 4.314 10 C 0.384 3.616 11 O -0.447 6.447 12 N -0.352 5.352 13 C 0.040 3.960 14 H 0.100 0.900 15 C -0.148 4.148 16 C -0.138 4.138 17 C -0.173 4.173 18 C 0.018 3.982 19 N -0.330 5.330 20 C -0.374 4.374 21 H 0.079 0.921 22 C -0.207 4.207 23 N -0.592 5.592 24 Si 0.755 3.245 25 H -0.202 1.202 26 H -0.240 1.240 27 H -0.211 1.211 28 C 0.002 3.998 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.014 0.986 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.372 -14.193 -21.837 27.067 hybrid contribution -0.057 1.441 0.317 1.477 sum -7.429 -12.752 -21.520 26.094 Atomic orbital electron populations 1.21767 0.93090 1.03887 1.01989 1.20636 0.97070 0.85566 1.07120 1.21844 0.93399 0.95977 0.84724 1.45835 1.49628 1.07893 1.09904 0.68103 1.77102 1.23749 1.00846 1.09865 1.22650 1.00967 0.90236 0.91128 1.98457 1.92120 1.41143 1.65383 1.19763 1.21604 0.95313 0.94672 1.17396 0.83709 0.75919 0.84533 1.90768 1.25606 1.54568 1.73710 1.46111 1.15315 1.61874 1.11946 1.21320 1.00771 0.94682 0.79228 0.90013 1.21249 0.98176 0.95280 1.00046 1.20242 1.00796 0.98807 0.93936 1.21298 1.00785 0.97392 0.97840 1.21075 0.92931 0.88178 0.96026 1.43944 1.40870 1.42431 1.05724 1.18865 1.10815 0.92227 1.15456 0.92095 1.25748 0.97530 0.97719 0.99750 1.69915 1.22466 1.14858 1.51949 0.86349 0.81179 0.77696 0.79323 1.20160 1.24036 1.21057 1.21920 0.97305 0.95998 0.84546 0.91637 0.89004 0.94613 0.85206 0.88116 0.75093 0.92565 0.88668 0.90189 0.91813 0.93837 0.90118 0.93702 0.93342 0.93025 0.98623 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.90 71.98 0.71 -0.98 16 2 C -0.07 -0.60 6.27 29.85 0.19 -0.42 16 3 C 0.18 3.00 6.55 42.15 0.28 3.28 16 4 N -0.42 -6.35 7.28 -46.80 -0.34 -6.69 16 5 H 0.47 2.66 8.96 -213.42 -1.91 0.75 16 6 N -0.29 -7.18 12.64 -48.96 -0.62 -7.80 16 7 C 0.14 4.21 7.89 85.66 0.68 4.89 16 8 Cl 0.00 0.04 29.19 -2.72 -0.08 -0.04 16 9 C -0.30 -8.08 5.88 -20.13 -0.12 -8.20 16 10 C 0.60 19.54 7.22 86.65 0.63 20.17 16 11 O -0.57 -23.15 16.77 -4.04 -0.07 -23.22 16 12 N -0.70 -20.81 4.98 -447.04 -2.22 -23.03 16 13 C 0.15 4.91 2.27 44.74 0.10 5.01 16 14 H 0.08 2.81 6.75 -2.39 -0.02 2.80 16 15 C -0.11 -3.06 5.07 29.76 0.15 -2.91 16 16 C -0.10 -2.51 5.15 28.62 0.15 -2.36 16 17 C -0.13 -4.06 5.74 29.39 0.17 -3.89 16 18 C 0.14 5.54 5.65 87.38 0.49 6.04 16 19 N -0.61 -28.75 1.97 -697.69 -1.37 -30.12 16 20 C -0.24 -13.79 9.81 84.04 0.82 -12.97 16 21 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 22 C -0.01 -0.69 5.13 84.86 0.44 -0.25 16 23 N -0.95 -60.03 13.97 21.65 0.30 -59.72 16 24 Si 0.92 50.60 24.11 68.60 1.65 52.25 16 25 H -0.28 -14.63 6.47 99.48 0.64 -13.99 16 26 H -0.31 -17.22 7.11 99.48 0.71 -16.51 16 27 H -0.28 -15.84 7.01 99.48 0.70 -15.14 16 28 C 0.13 5.83 3.58 86.61 0.31 6.14 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.41 9.99 8.53 -92.70 -0.79 9.20 16 35 H 0.06 1.96 7.49 -2.38 -0.02 1.94 16 36 H 0.09 1.94 7.94 -2.39 -0.02 1.93 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.49 7.36 -2.39 -0.02 1.47 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.80 7.99 -2.39 -0.02 1.78 16 42 H 0.05 1.75 8.06 -2.38 -0.02 1.73 16 43 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 44 H 0.00 -0.20 6.11 -2.39 -0.01 -0.22 16 45 H 0.05 2.32 5.65 -2.39 -0.01 2.31 16 Total: -1.00 -80.41 373.88 0.50 -79.90 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -1.74 Total: 4.92 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.99 Total: 13.54 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -4.25 Total: -127.37 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.07 Total: -23.22 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 1.65 Total: 52.25 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.04 kcal Total: -80.41 0.50 -79.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034239607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.255 kcal (2) G-P(sol) polarization free energy of solvation -80.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds