Wall clock time and date at job start Tue Mar 31 2020 23:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21622 * 119.99520 * 359.97438 * 7 6 5 9 9 C 1.47365 * 120.00418 * 180.02562 * 7 6 5 10 10 C 1.35913 * 126.41498 * 179.97438 * 9 7 6 11 11 O 1.34490 * 107.08358 * 179.97438 * 10 9 7 12 12 C 1.34200 * 108.25536 * 359.97438 * 11 10 9 13 13 O 1.35344 * 125.44822 * 179.97438 * 12 11 10 14 14 C 1.42892 * 117.00588 * 0.02931 * 13 12 11 15 15 N 1.30557 * 109.09868 * 359.74682 * 12 11 10 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46838 * 60.00518 * 25 23 21 27 27 H 1.48502 * 109.47196 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47366 * 300.00596 * 25 23 21 29 29 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 30 30 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 31 31 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.07996 * 126.45690 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47429 * 59.99437 * 14 13 12 39 39 H 1.08994 * 109.47548 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.46796 * 300.00273 * 14 13 12 41 41 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 42 42 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 43 43 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 44 44 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1461 0.2830 9 6 5.8872 4.4433 -0.0161 10 6 7.1859 4.8384 0.0525 11 8 7.2015 6.1738 -0.1060 12 6 5.9370 6.5926 -0.2695 13 8 5.5535 7.8769 -0.4571 14 6 6.5854 8.8650 -0.4830 15 7 5.1365 5.5622 -0.2235 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 2.7722 4.2185 -8.7053 27 1 2.7316 2.1478 -9.9672 28 1 0.6921 3.0006 -8.9711 29 1 -0.3633 -1.0274 -0.0205 30 1 -0.3633 0.4961 0.8999 31 1 -0.3632 0.5314 -0.8797 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 8.0436 4.2002 0.2054 38 1 7.2791 8.6449 -1.2945 39 1 6.1428 9.8486 -0.6395 40 1 7.1217 8.8551 0.4660 41 1 0.6569 2.1788 -1.3353 42 1 1.7652 0.3910 -2.4816 43 1 3.2964 1.2785 -2.2916 44 1 2.8442 0.8531 -4.9109 45 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698608708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:39 Heat of formation + Delta-G solvation = -75.998202 kcal Electronic energy + Delta-G solvation = -29637.499415 eV Core-core repulsion = 25271.868189 eV Total energy + Delta-G solvation = -4365.631226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.58553 -39.70637 -39.00764 -38.48496 -37.21529 -35.06859 -34.05807 -33.79378 -31.74512 -31.10862 -30.36685 -28.72924 -27.71223 -26.60563 -24.71927 -24.08449 -23.01850 -22.33961 -20.62825 -20.31430 -19.25028 -18.80659 -17.85772 -17.68353 -17.28922 -16.77543 -16.57898 -15.86745 -15.61768 -15.48177 -15.36671 -14.96275 -14.73111 -14.21317 -14.19588 -13.99044 -13.75011 -13.58286 -13.40607 -13.14491 -12.60591 -12.54781 -12.27100 -12.20947 -11.89697 -11.73075 -11.46088 -11.34315 -11.15956 -11.02498 -10.87437 -10.81180 -10.73673 -10.40687 -10.20562 -10.16124 -9.44185 -9.03013 -8.76635 -8.43896 -8.00436 -7.89914 -6.36282 -3.76762 0.98493 1.73885 1.95542 2.56050 3.15313 3.23446 3.28459 3.32974 3.33235 3.97699 4.13708 4.32353 4.45441 4.55926 4.65677 4.66185 4.74089 4.88827 4.96434 5.02269 5.11929 5.21252 5.29601 5.32164 5.34830 5.45063 5.56579 5.62870 5.68534 5.78789 5.85671 5.90619 6.03085 6.12165 6.23733 6.32991 6.43120 6.50013 7.20658 7.32534 7.60024 7.64171 7.70934 8.11866 8.23863 8.67637 9.23709 9.60761 10.12865 10.81582 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007020 B = 0.003535 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3987.766642 B = 7918.844028 C =10617.305291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.091 0.909 5 C 0.125 3.875 6 N -0.691 5.691 7 C 0.601 3.399 8 O -0.545 6.545 9 C -0.042 4.042 10 C -0.002 4.002 11 O -0.227 6.227 12 C 0.380 3.620 13 O -0.242 6.242 14 C 0.024 3.976 15 N -0.447 5.447 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.422 0.578 37 H 0.236 0.764 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.353 0.647 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 5.926 18.349 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.001 3.999 6 N -0.342 5.342 7 C 0.386 3.614 8 O -0.423 6.423 9 C -0.161 4.161 10 C -0.074 4.074 11 O -0.118 6.118 12 C 0.134 3.866 13 O -0.150 6.150 14 C -0.071 4.071 15 N -0.192 5.192 16 N -0.290 5.290 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.260 0.740 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.173 0.827 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.224 0.776 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.216 6.576 18.245 20.366 hybrid contribution 0.302 -0.435 -1.043 1.170 sum 6.518 6.142 17.202 19.393 Atomic orbital electron populations 1.21756 0.95260 1.01939 1.02065 1.22213 0.96793 0.97909 1.03080 1.21926 0.94138 0.93591 0.94121 0.89099 1.21492 0.93200 0.83245 1.01974 1.45639 1.06914 1.10773 1.70886 1.16634 0.82868 0.84883 0.76999 1.90817 1.56448 1.43977 1.51094 1.21676 0.90849 0.93975 1.09622 1.24920 1.00130 0.78842 1.03495 1.84375 1.32333 1.24386 1.70734 1.23391 0.77472 0.88031 0.97726 1.86411 1.32577 1.08401 1.87592 1.23294 0.90802 0.90083 1.02904 1.71180 1.30126 0.95390 1.22510 1.60184 1.18102 1.51226 0.99513 1.21763 1.00913 0.95385 0.90806 1.19805 0.85207 0.87835 0.84307 1.90527 1.44868 1.24591 1.86398 1.41850 1.49855 1.23351 1.05185 1.19646 1.33474 1.06160 0.83487 0.88032 1.25240 0.96816 0.96491 0.99398 1.69609 1.37872 1.20118 1.26846 0.85937 0.78769 0.79301 0.80318 1.19949 1.21014 1.19938 0.92521 0.92547 0.92415 0.90994 0.91291 0.90942 0.91026 0.74014 0.74837 0.91358 0.86311 0.91534 0.82656 0.93460 0.89578 0.77573 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.71 37.16 0.36 -1.13 16 2 C -0.16 -1.61 5.17 -26.73 -0.14 -1.75 16 3 C 0.07 0.84 2.70 -67.71 -0.18 0.66 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.12 1.57 4.70 -4.05 -0.02 1.55 16 6 N -0.69 -9.97 5.38 -61.40 -0.33 -10.30 16 7 C 0.60 9.27 7.81 -12.54 -0.10 9.18 16 8 O -0.54 -9.23 16.89 5.26 0.09 -9.15 16 9 C -0.04 -0.61 6.99 -82.99 -0.58 -1.19 16 10 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 11 O -0.23 -2.54 10.20 -17.75 -0.18 -2.73 16 12 C 0.38 5.00 8.98 52.22 0.47 5.47 16 13 O -0.24 -2.75 10.55 -40.95 -0.43 -3.18 16 14 C 0.02 0.15 10.73 101.05 1.08 1.23 16 15 N -0.45 -6.91 11.10 -11.72 -0.13 -7.04 16 16 N -0.66 -10.03 5.36 -107.99 -0.58 -10.60 16 17 C 0.04 0.77 5.34 -4.98 -0.03 0.75 16 18 C 0.44 10.62 7.83 -10.99 -0.09 10.53 16 19 O -0.58 -15.91 15.90 5.54 0.09 -15.82 16 20 N -0.57 -14.68 5.29 -10.97 -0.06 -14.74 16 21 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.09 13.05 55.50 0.72 -24.37 16 25 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 6.85 -51.93 -0.36 0.28 16 32 H 0.07 0.80 6.23 -51.93 -0.32 0.47 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.99 6.57 -51.92 -0.34 0.65 16 36 H 0.42 6.41 7.87 -40.82 -0.32 6.09 16 37 H 0.24 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.35 5.47 7.23 -39.29 -0.28 5.18 16 42 H 0.05 0.75 6.49 -51.93 -0.34 0.42 16 43 H 0.09 1.51 6.15 -51.93 -0.32 1.19 16 44 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -35.18 385.61 -5.04 -40.22 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -5.92 Total: 17.89 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 0.90 Total: 17.50 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.37 Total: -67.04 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.44 Total: -30.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.18 -5.04 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698608708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds