Wall clock time and date at job start Tue Mar 31 2020 23:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21622 * 119.99520 * 359.97438 * 7 6 5 9 9 C 1.47365 * 120.00418 * 180.02562 * 7 6 5 10 10 C 1.35913 * 126.41498 * 179.97438 * 9 7 6 11 11 O 1.34490 * 107.08358 * 179.97438 * 10 9 7 12 12 C 1.34200 * 108.25536 * 359.97438 * 11 10 9 13 13 O 1.35344 * 125.44822 * 179.97438 * 12 11 10 14 14 C 1.42892 * 117.00588 * 0.02931 * 13 12 11 15 15 N 1.30557 * 109.09868 * 359.74682 * 12 11 10 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46838 * 60.00518 * 25 23 21 27 27 H 1.48502 * 109.47196 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47366 * 300.00596 * 25 23 21 29 29 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 30 30 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 31 31 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.07996 * 126.45690 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47429 * 59.99437 * 14 13 12 39 39 H 1.08994 * 109.47548 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.46796 * 300.00273 * 14 13 12 41 41 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 42 42 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 43 43 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 44 44 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 45 45 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1461 0.2830 9 6 5.8872 4.4433 -0.0161 10 6 7.1859 4.8384 0.0525 11 8 7.2015 6.1738 -0.1060 12 6 5.9370 6.5926 -0.2695 13 8 5.5535 7.8769 -0.4571 14 6 6.5854 8.8650 -0.4830 15 7 5.1365 5.5622 -0.2235 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 2.7722 4.2185 -8.7053 27 1 2.7316 2.1478 -9.9672 28 1 0.6921 3.0006 -8.9711 29 1 -0.3633 -1.0274 -0.0205 30 1 -0.3633 0.4961 0.8999 31 1 -0.3632 0.5314 -0.8797 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 8.0436 4.2002 0.2054 38 1 7.2791 8.6449 -1.2945 39 1 6.1428 9.8486 -0.6395 40 1 7.1217 8.8551 0.4660 41 1 0.6569 2.1788 -1.3353 42 1 1.7652 0.3910 -2.4816 43 1 3.2964 1.2785 -2.2916 44 1 2.8442 0.8531 -4.9109 45 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698608708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:39 Heat of formation + Delta-G solvation = -108.341060 kcal Electronic energy + Delta-G solvation = -29638.901907 eV Core-core repulsion = 25271.868189 eV Total energy + Delta-G solvation = -4367.033718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53928 -40.86905 -40.17208 -39.76034 -38.62031 -36.08321 -35.95354 -35.07732 -33.30753 -32.76873 -31.30930 -29.79599 -28.31949 -28.16930 -26.18500 -25.47118 -23.95104 -23.23663 -21.81179 -21.52397 -20.71490 -20.00899 -19.73835 -18.59561 -18.32079 -18.30088 -17.43848 -17.11487 -16.92356 -16.51448 -16.36533 -16.27649 -15.98024 -15.88772 -15.61493 -15.28085 -14.98526 -14.79954 -14.45397 -14.35301 -14.03824 -13.55170 -13.52428 -13.16262 -13.10888 -12.96942 -12.89507 -12.71906 -12.43254 -12.30696 -12.13376 -12.08314 -11.89879 -11.81251 -11.65535 -11.49072 -11.36151 -10.33946 -10.12584 -10.00620 -9.73267 -9.30144 -8.46088 -5.94846 0.02181 0.85737 0.92447 1.38997 1.39997 1.51403 1.72892 2.06940 2.11500 2.22930 2.29198 2.94883 3.20919 3.39022 3.56776 3.72464 3.75956 4.03489 4.13285 4.17859 4.21143 4.23854 4.29062 4.36886 4.41832 4.48219 4.53451 4.59121 4.63080 4.67227 4.78242 4.82162 4.95010 5.13626 5.27364 5.38979 5.40211 5.40630 5.59748 5.89268 6.10306 6.31574 6.43059 6.60096 6.60810 7.08731 7.13262 7.57130 8.12994 8.71337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007020 B = 0.003535 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3987.766642 B = 7918.844028 C =10617.305291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.109 0.891 5 C 0.123 3.877 6 N -0.692 5.692 7 C 0.598 3.402 8 O -0.567 6.567 9 C -0.079 4.079 10 C 0.026 3.974 11 O -0.215 6.215 12 C 0.379 3.621 13 O -0.259 6.259 14 C 0.014 3.986 15 N -0.486 5.486 16 N -0.669 5.669 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.270 0.730 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.352 0.648 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.394 0.606 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 5.903 19.091 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C -0.028 4.028 4 H 0.127 0.873 5 C -0.001 4.001 6 N -0.341 5.341 7 C 0.384 3.616 8 O -0.447 6.447 9 C -0.197 4.197 10 C -0.046 4.046 11 O -0.106 6.106 12 C 0.132 3.868 13 O -0.167 6.167 14 C -0.080 4.080 15 N -0.232 5.232 16 N -0.302 5.302 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.195 1.195 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.286 0.714 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.172 0.828 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.227 0.773 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.945 6.538 19.008 21.267 hybrid contribution 0.108 -0.351 -1.203 1.258 sum 7.054 6.188 17.805 20.126 Atomic orbital electron populations 1.21748 0.94888 1.02368 1.01875 1.22160 0.96984 0.96530 1.03696 1.21983 0.93512 0.94762 0.92554 0.87266 1.21629 0.93660 0.82269 1.02504 1.45728 1.06691 1.11298 1.70430 1.16822 0.82969 0.85245 0.76587 1.90787 1.56821 1.44680 1.52459 1.21682 0.92088 0.93509 1.12470 1.25598 1.00047 0.78846 1.00157 1.84411 1.31480 1.24324 1.70339 1.23452 0.77712 0.88502 0.97114 1.86424 1.34727 1.08192 1.87347 1.23702 0.90479 0.89742 1.04036 1.71060 1.31631 0.96438 1.24066 1.60132 1.17985 1.52038 1.00043 1.21510 1.01390 0.95320 0.88602 1.20895 0.83378 0.87514 0.85531 1.90493 1.46216 1.26462 1.87221 1.41934 1.50469 1.23456 1.05468 1.19631 1.35094 1.06363 0.85262 0.90371 1.26036 0.96060 0.97313 1.01874 1.69675 1.37833 1.20856 1.27913 0.85006 0.78751 0.77950 0.76731 1.19904 1.19393 1.19483 0.91726 0.91252 0.94177 0.91999 0.89027 0.89080 0.92280 0.74579 0.71449 0.90834 0.83758 0.89978 0.82781 0.91262 0.89183 0.77257 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.71 71.98 0.70 -1.95 16 2 C -0.15 -2.76 5.17 30.60 0.16 -2.61 16 3 C 0.08 1.76 2.70 44.91 0.12 1.88 16 4 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 5 C 0.12 2.96 4.70 86.38 0.41 3.36 16 6 N -0.69 -19.92 5.38 -466.43 -2.51 -22.43 16 7 C 0.60 18.46 7.81 86.65 0.68 19.13 16 8 O -0.57 -19.00 16.89 -4.10 -0.07 -19.07 16 9 C -0.08 -2.28 6.99 40.31 0.28 -2.00 16 10 C 0.03 0.56 11.93 67.28 0.80 1.36 16 11 O -0.21 -4.54 10.20 18.90 0.19 -4.35 16 12 C 0.38 9.87 8.98 130.43 1.17 11.04 16 13 O -0.26 -5.75 10.55 -64.12 -0.68 -6.43 16 14 C 0.01 0.15 10.73 113.37 1.22 1.36 16 15 N -0.49 -15.25 11.10 -419.40 -4.65 -19.91 16 16 N -0.67 -20.17 5.36 -495.58 -2.65 -22.82 16 17 C 0.06 2.26 5.34 85.55 0.46 2.72 16 18 C 0.44 21.57 7.83 87.65 0.69 22.25 16 19 O -0.62 -34.97 15.90 -3.08 -0.05 -35.02 16 20 N -0.58 -30.68 5.29 -306.99 -1.62 -32.30 16 21 C -0.33 -19.56 9.68 84.04 0.81 -18.74 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -51.14 13.05 21.66 0.28 -50.86 16 25 Si 0.99 44.02 29.55 68.60 2.03 46.05 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.84 6.85 -2.38 -0.02 0.83 16 32 H 0.06 1.25 6.23 -2.39 -0.01 1.24 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.59 6.57 -2.38 -0.02 1.57 16 36 H 0.42 12.87 7.87 -92.70 -0.73 12.14 16 37 H 0.27 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.35 10.84 7.23 -89.70 -0.65 10.19 16 42 H 0.07 2.16 6.49 -2.39 -0.02 2.14 16 43 H 0.09 3.15 6.15 -2.38 -0.01 3.13 16 44 H 0.39 20.14 7.90 -92.70 -0.73 19.41 16 45 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -77.89 385.61 -2.81 -80.70 By element: Atomic # 1 Polarization: 49.92 SS G_CDS: -1.04 Total: 48.89 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: 7.96 Total: 37.54 kcal Atomic # 7 Polarization: -137.16 SS G_CDS: -11.16 Total: -148.32 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.60 Total: -64.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -77.89 -2.81 -80.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698608708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -77.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds