Wall clock time and date at job start Tue Mar 31 2020 23:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.30365 * 2 1 4 4 C 1.54393 * 110.34421 * 122.28632 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.74101 * 4 2 1 6 6 C 1.34777 * 127.83866 * 140.41856 * 5 4 2 7 7 O 1.21477 * 119.99645 * 180.02562 * 6 5 4 8 8 C 1.48451 * 120.00190 * 0.02688 * 6 5 4 9 9 C 1.39535 * 120.55173 * 179.97438 * 8 6 5 10 10 C 1.38757 * 118.26599 * 179.97438 * 9 8 6 11 11 C 1.50696 * 120.43142 * 180.02562 * 10 9 8 12 12 F 1.39902 * 109.47219 * 300.00662 * 11 10 9 13 13 F 1.39908 * 109.46807 * 59.99772 * 11 10 9 14 14 N 1.32211 * 119.14736 * 0.02562 * 10 9 8 15 15 C 1.31885 * 121.03232 * 359.97438 * 14 10 9 16 16 N 1.31576 * 121.92023 * 359.74362 * 15 14 10 17 17 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 18 18 C 1.54283 * 110.34759 * 237.82267 * 2 1 3 19 19 H 1.08997 * 110.34370 * 122.15005 * 18 2 1 20 20 C 1.53004 * 110.34155 * 0.02562 * 18 2 1 21 21 N 1.46499 * 109.47198 * 176.47418 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 H 1.08998 * 109.46692 * 182.17389 * 1 2 3 31 31 H 1.08996 * 109.47452 * 302.18042 * 1 2 3 32 32 H 1.09000 * 109.46682 * 62.17536 * 1 2 3 33 33 H 1.09004 * 110.40591 * 261.52516 * 4 2 1 34 34 H 1.09000 * 110.40490 * 23.83061 * 4 2 1 35 35 H 1.07998 * 120.86675 * 359.97438 * 9 8 6 36 36 H 1.08995 * 109.47717 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.03523 * 180.02562 * 15 14 10 38 38 H 1.08998 * 110.38541 * 280.73226 * 17 5 4 39 39 H 1.09004 * 110.50344 * 158.25046 * 17 5 4 40 40 H 1.09009 * 109.46730 * 56.47206 * 20 18 2 41 41 H 1.08998 * 109.46846 * 296.47750 * 20 18 2 42 42 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 43 43 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2238 5 7 3.2665 -1.4823 0.7213 6 6 4.4425 -1.6676 1.3532 7 8 5.3383 -2.2760 0.8027 8 6 4.6429 -1.1284 2.7217 9 6 5.8555 -1.3140 3.3866 10 6 5.9915 -0.7895 4.6640 11 6 7.2801 -0.9608 5.4263 12 9 7.5433 -2.3242 5.5969 13 9 8.3272 -0.3698 4.7109 14 7 4.9760 -0.1374 5.2038 15 6 3.8430 0.0201 4.5473 16 7 3.6710 -0.4551 3.3325 17 6 2.8819 -1.9415 -0.6355 18 6 2.0665 -0.7703 -1.2244 19 1 2.7081 -0.1265 -1.8258 20 6 0.9063 -1.3010 -2.0690 21 7 1.4348 -1.9554 -3.2685 22 6 0.5765 -2.5052 -4.1830 23 1 -0.4898 -2.4603 -4.0177 24 6 1.0771 -3.1201 -5.3224 25 7 0.2522 -3.6490 -6.2010 26 14 2.9215 -3.1981 -5.6078 27 1 3.4643 -4.4398 -5.0007 28 1 3.1968 -3.1992 -7.0671 29 1 3.5695 -2.0172 -4.9828 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8697 32 1 -0.3633 0.4797 -0.9089 33 1 2.3401 -0.0814 2.0206 34 1 1.3227 -1.4861 1.5792 35 1 6.6670 -1.8519 2.9192 36 1 7.1916 -0.4826 6.4017 37 1 3.0344 0.5588 5.0190 38 1 2.2668 -2.8392 -0.5723 39 1 3.7689 -2.1293 -1.2407 40 1 0.2611 -0.4725 -2.3614 41 1 0.3317 -2.0206 -1.4858 42 1 2.3926 -1.9953 -3.4170 43 1 0.6019 -4.0790 -6.9970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271630554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:47 Heat of formation + Delta-G solvation = -49.988860 kcal Electronic energy + Delta-G solvation = -29220.862085 eV Core-core repulsion = 24745.271193 eV Total energy + Delta-G solvation = -4475.590892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.67728 -47.66322 -41.93060 -40.08018 -38.26651 -35.23818 -34.66750 -33.09789 -32.96534 -31.37780 -29.52157 -28.36589 -27.09737 -25.88511 -24.92547 -24.19330 -23.02863 -21.81389 -20.54224 -19.23497 -18.94326 -18.37086 -17.93061 -17.58972 -17.29689 -16.60038 -16.16070 -16.12057 -16.02797 -15.50499 -15.34427 -14.96310 -14.59200 -14.50135 -14.01293 -14.00872 -13.91833 -13.53871 -13.33820 -13.01060 -12.61353 -12.39678 -12.18667 -12.11675 -12.05974 -11.99481 -11.58638 -11.47890 -11.24014 -10.93834 -10.81439 -10.61184 -10.48378 -10.41131 -10.28452 -10.02661 -9.75460 -9.59465 -8.91055 -8.86641 -7.24181 -5.77596 -3.13438 -0.22617 0.02234 2.27165 2.36648 2.50907 3.12386 3.25857 3.38841 3.42291 3.45634 3.47047 3.51922 3.88713 4.14399 4.27021 4.28575 4.53682 4.58558 4.59508 4.74789 4.86484 4.87219 5.19318 5.33460 5.40726 5.50371 5.53194 5.57366 5.65225 5.74970 5.85472 5.88658 5.97890 6.02214 6.04620 6.19375 6.22630 6.37623 6.63512 6.71645 7.11210 7.28853 7.74143 7.97836 8.41254 9.20021 9.92673 10.11666 11.40697 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002510 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.211072 B =11151.096055 C =12394.303127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.090 3.910 5 N -0.596 5.596 6 C 0.581 3.419 7 O -0.522 6.522 8 C 0.152 3.848 9 C -0.133 4.133 10 C 0.101 3.899 11 C 0.328 3.672 12 F -0.186 7.186 13 F -0.186 7.186 14 N -0.482 5.482 15 C 0.299 3.701 16 N -0.474 5.474 17 C 0.111 3.889 18 C -0.111 4.111 19 H 0.080 0.920 20 C 0.166 3.834 21 N -0.758 5.758 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.214 0.786 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.360 0.640 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 10.463 28.331 31.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.032 4.032 5 N -0.327 5.327 6 C 0.366 3.634 7 O -0.397 6.397 8 C 0.004 3.996 9 C -0.156 4.156 10 C -0.049 4.049 11 C 0.273 3.727 12 F -0.167 7.167 13 F -0.167 7.167 14 N -0.197 5.197 15 C 0.011 3.989 16 N -0.191 5.191 17 C -0.010 4.010 18 C -0.130 4.130 19 H 0.099 0.901 20 C 0.039 3.961 21 N -0.404 5.404 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.186 0.814 36 H 0.158 0.842 37 H 0.231 0.769 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.193 0.807 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.658 10.496 28.343 31.440 hybrid contribution 1.952 -0.599 -0.841 2.208 sum 10.610 9.897 27.502 31.095 Atomic orbital electron populations 1.21899 0.93660 1.02768 1.02042 1.22081 0.96760 0.99148 0.93797 0.90375 1.23126 0.85690 0.96598 0.97807 1.48863 1.12330 1.53553 1.17942 1.17196 0.81899 0.80760 0.83499 1.90853 1.41453 1.41666 1.65773 1.21757 0.89876 0.92859 0.95156 1.22764 0.99678 0.98376 0.94771 1.22077 0.95678 0.94502 0.92599 1.20103 0.80078 0.76915 0.95573 1.93079 1.94267 1.33240 1.96090 1.93080 1.59082 1.83504 1.81032 1.67968 1.00670 1.13462 1.37592 1.25201 0.93502 0.93304 0.86856 1.68562 1.31412 1.08403 1.10674 1.22664 0.99709 0.97744 0.80931 1.22413 0.98216 0.96220 0.96191 0.90115 1.20841 0.92830 0.95291 0.87104 1.42791 1.05053 1.69541 1.23000 1.19030 0.91110 1.28702 0.98602 0.89177 1.24667 0.97030 1.00385 0.96966 1.69695 1.33097 1.43005 1.12361 0.86583 0.86970 0.77945 0.77248 1.20954 1.21707 1.20342 0.91666 0.92902 0.91336 0.86590 0.90768 0.81411 0.84158 0.76947 0.89570 0.89802 0.94612 0.94940 0.80745 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.94 37.16 0.29 -1.18 16 2 C -0.10 -1.07 3.66 -89.22 -0.33 -1.40 16 3 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 4 C 0.09 0.94 6.11 -2.41 -0.01 0.93 16 5 N -0.60 -7.92 3.32 -170.05 -0.56 -8.49 16 6 C 0.58 8.16 7.92 -12.05 -0.10 8.06 16 7 O -0.52 -8.93 16.69 5.39 0.09 -8.84 16 8 C 0.15 1.68 6.77 -82.63 -0.56 1.12 16 9 C -0.13 -1.32 9.32 -38.91 -0.36 -1.68 16 10 C 0.10 0.82 6.31 -82.24 -0.52 0.30 16 11 C 0.33 2.10 5.58 36.00 0.20 2.30 16 12 F -0.19 -1.48 17.27 2.25 0.04 -1.44 16 13 F -0.19 -1.48 17.27 2.25 0.04 -1.44 16 14 N -0.48 -3.61 10.35 -10.81 -0.11 -3.72 16 15 C 0.30 1.99 12.27 -92.26 -1.13 0.85 16 16 N -0.47 -4.23 6.81 -11.14 -0.08 -4.31 16 17 C 0.11 1.67 6.35 -2.32 -0.01 1.65 16 18 C -0.11 -1.60 3.11 -89.22 -0.28 -1.87 16 19 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.17 2.97 4.39 -4.04 -0.02 2.95 16 21 N -0.76 -17.52 5.26 -59.90 -0.32 -17.84 16 22 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 26 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 30 H 0.06 0.70 6.85 -51.93 -0.36 0.35 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 33 H 0.12 1.07 5.18 -51.93 -0.27 0.80 16 34 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 35 H 0.17 1.66 7.74 -52.49 -0.41 1.25 16 36 H 0.14 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.09 1.35 7.78 -51.93 -0.40 0.94 16 39 H 0.08 1.39 7.89 -51.93 -0.41 0.99 16 40 H 0.04 0.64 6.58 -51.92 -0.34 0.30 16 41 H 0.03 0.58 6.89 -51.93 -0.36 0.22 16 42 H 0.36 8.26 5.42 -40.82 -0.22 8.04 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -34.18 360.93 -7.70 -41.88 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.22 Total: 4.58 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -3.08 Total: 5.11 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.29 Total: -62.90 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.18 -7.70 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271630554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.109 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds