Wall clock time and date at job start Tue Mar 31 2020 23:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.30365 * 2 1 4 4 C 1.54393 * 110.34421 * 122.28632 * 2 1 3 5 5 N 1.48139 * 104.62068 * 142.74101 * 4 2 1 6 6 C 1.34777 * 127.83866 * 140.41856 * 5 4 2 7 7 O 1.21477 * 119.99645 * 180.02562 * 6 5 4 8 8 C 1.48451 * 120.00190 * 0.02688 * 6 5 4 9 9 C 1.39535 * 120.55173 * 179.97438 * 8 6 5 10 10 C 1.38757 * 118.26599 * 179.97438 * 9 8 6 11 11 C 1.50696 * 120.43142 * 180.02562 * 10 9 8 12 12 F 1.39902 * 109.47219 * 300.00662 * 11 10 9 13 13 F 1.39908 * 109.46807 * 59.99772 * 11 10 9 14 14 N 1.32211 * 119.14736 * 0.02562 * 10 9 8 15 15 C 1.31885 * 121.03232 * 359.97438 * 14 10 9 16 16 N 1.31576 * 121.92023 * 359.74362 * 15 14 10 17 17 C 1.48315 * 104.38933 * 320.47276 * 5 4 2 18 18 C 1.54283 * 110.34759 * 237.82267 * 2 1 3 19 19 H 1.08997 * 110.34370 * 122.15005 * 18 2 1 20 20 C 1.53004 * 110.34155 * 0.02562 * 18 2 1 21 21 N 1.46499 * 109.47198 * 176.47418 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 H 1.08998 * 109.46692 * 182.17389 * 1 2 3 31 31 H 1.08996 * 109.47452 * 302.18042 * 1 2 3 32 32 H 1.09000 * 109.46682 * 62.17536 * 1 2 3 33 33 H 1.09004 * 110.40591 * 261.52516 * 4 2 1 34 34 H 1.09000 * 110.40490 * 23.83061 * 4 2 1 35 35 H 1.07998 * 120.86675 * 359.97438 * 9 8 6 36 36 H 1.08995 * 109.47717 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.03523 * 180.02562 * 15 14 10 38 38 H 1.08998 * 110.38541 * 280.73226 * 17 5 4 39 39 H 1.09004 * 110.50344 * 158.25046 * 17 5 4 40 40 H 1.09009 * 109.46730 * 56.47206 * 20 18 2 41 41 H 1.08998 * 109.46846 * 296.47750 * 20 18 2 42 42 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 43 43 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2238 5 7 3.2665 -1.4823 0.7213 6 6 4.4425 -1.6676 1.3532 7 8 5.3383 -2.2760 0.8027 8 6 4.6429 -1.1284 2.7217 9 6 5.8555 -1.3140 3.3866 10 6 5.9915 -0.7895 4.6640 11 6 7.2801 -0.9608 5.4263 12 9 7.5433 -2.3242 5.5969 13 9 8.3272 -0.3698 4.7109 14 7 4.9760 -0.1374 5.2038 15 6 3.8430 0.0201 4.5473 16 7 3.6710 -0.4551 3.3325 17 6 2.8819 -1.9415 -0.6355 18 6 2.0665 -0.7703 -1.2244 19 1 2.7081 -0.1265 -1.8258 20 6 0.9063 -1.3010 -2.0690 21 7 1.4348 -1.9554 -3.2685 22 6 0.5765 -2.5052 -4.1830 23 1 -0.4898 -2.4603 -4.0177 24 6 1.0771 -3.1201 -5.3224 25 7 0.2522 -3.6490 -6.2010 26 14 2.9215 -3.1981 -5.6078 27 1 3.4643 -4.4398 -5.0007 28 1 3.1968 -3.1992 -7.0671 29 1 3.5695 -2.0172 -4.9828 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8697 32 1 -0.3633 0.4797 -0.9089 33 1 2.3401 -0.0814 2.0206 34 1 1.3227 -1.4861 1.5792 35 1 6.6670 -1.8519 2.9192 36 1 7.1916 -0.4826 6.4017 37 1 3.0344 0.5588 5.0190 38 1 2.2668 -2.8392 -0.5723 39 1 3.7689 -2.1293 -1.2407 40 1 0.2611 -0.4725 -2.3614 41 1 0.3317 -2.0206 -1.4858 42 1 2.3926 -1.9953 -3.4170 43 1 0.6019 -4.0790 -6.9970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271630554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:46 Heat of formation + Delta-G solvation = -72.190589 kcal Electronic energy + Delta-G solvation = -29221.824824 eV Core-core repulsion = 24745.271193 eV Total energy + Delta-G solvation = -4476.553631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.22619 -48.22569 -42.63605 -41.10392 -39.40495 -36.64422 -35.68973 -34.32737 -33.73821 -33.16936 -30.88403 -29.01544 -28.19294 -26.90315 -26.08509 -24.94624 -24.26171 -23.37372 -21.42001 -20.54542 -19.65403 -19.48658 -18.89265 -18.48324 -18.19238 -17.52035 -17.12230 -16.89219 -16.87052 -16.65874 -16.37159 -15.99519 -15.86674 -15.57143 -15.08327 -14.98568 -14.85284 -14.58068 -14.51058 -14.25757 -14.10962 -13.65329 -13.30321 -13.12205 -12.95098 -12.92670 -12.87648 -12.64700 -12.36397 -12.23903 -12.10758 -11.84129 -11.83410 -11.67975 -11.53383 -11.29931 -11.17691 -10.93400 -10.51822 -9.95754 -9.28122 -8.03831 -5.36060 -0.97941 -0.60711 1.35767 1.36345 1.37887 1.44046 1.44566 1.91143 2.38605 2.45984 2.54293 2.85082 3.03547 3.20936 3.28238 3.40058 3.50003 3.57571 3.73851 3.76743 3.78977 3.92855 4.03810 4.17237 4.25377 4.38198 4.47421 4.53737 4.69576 4.73722 4.80071 4.84085 4.93245 5.05345 5.15958 5.20211 5.30245 5.34083 5.41988 5.57888 5.76813 6.20535 6.25163 6.47973 6.70760 7.07351 7.84581 8.01048 9.17686 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002510 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.211072 B =11151.096055 C =12394.303127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.095 0.905 4 C 0.094 3.906 5 N -0.596 5.596 6 C 0.576 3.424 7 O -0.565 6.565 8 C 0.141 3.859 9 C -0.148 4.148 10 C 0.106 3.894 11 C 0.328 3.672 12 F -0.196 7.196 13 F -0.196 7.196 14 N -0.476 5.476 15 C 0.306 3.694 16 N -0.477 5.477 17 C 0.110 3.890 18 C -0.102 4.102 19 H 0.076 0.924 20 C 0.166 3.834 21 N -0.763 5.763 22 C -0.228 4.228 23 H 0.063 0.937 24 C -0.062 4.062 25 N -0.982 5.982 26 Si 0.946 3.054 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.256 1.256 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.362 0.638 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 12.651 31.662 35.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.113 0.887 4 C -0.027 4.027 5 N -0.326 5.326 6 C 0.363 3.637 7 O -0.444 6.444 8 C -0.007 4.007 9 C -0.171 4.171 10 C -0.044 4.044 11 C 0.274 3.726 12 F -0.177 7.177 13 F -0.177 7.177 14 N -0.190 5.190 15 C 0.020 3.980 16 N -0.193 5.193 17 C -0.012 4.012 18 C -0.122 4.122 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.408 5.408 22 C -0.359 4.359 23 H 0.081 0.919 24 C -0.253 4.253 25 N -0.633 5.633 26 Si 0.774 3.226 27 H -0.209 1.209 28 H -0.221 1.221 29 H -0.180 1.180 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.176 0.824 36 H 0.198 0.802 37 H 0.274 0.726 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.194 0.806 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.046 12.732 31.737 35.372 hybrid contribution 1.716 -1.236 -1.751 2.745 sum 10.762 11.496 29.986 33.870 Atomic orbital electron populations 1.21876 0.92733 1.02567 1.02961 1.22086 0.97390 0.99430 0.91838 0.88686 1.23309 0.84634 0.96859 0.97918 1.48931 1.13040 1.53409 1.17197 1.17685 0.81368 0.80129 0.84555 1.90817 1.42799 1.43579 1.67160 1.21271 0.91023 0.94405 0.93986 1.22757 0.99260 0.99260 0.95780 1.22342 0.96585 0.93631 0.91836 1.20511 0.78851 0.76527 0.96694 1.93058 1.94255 1.34312 1.96119 1.93060 1.59542 1.83613 1.81530 1.68096 1.00690 1.12911 1.37307 1.26132 0.94095 0.91975 0.85798 1.68496 1.30673 1.08441 1.11700 1.22493 0.98743 0.97863 0.82103 1.22278 0.96753 0.96118 0.97066 0.90580 1.21017 0.94252 0.95038 0.85667 1.42869 1.04637 1.69579 1.23734 1.19051 0.90627 1.27222 0.98971 0.91887 1.25415 1.01564 1.01136 0.97197 1.69858 1.35228 1.45015 1.13217 0.85536 0.81627 0.78613 0.76794 1.20876 1.22142 1.18046 0.92595 0.89947 0.92319 0.84598 0.89912 0.82434 0.80231 0.72567 0.90509 0.91944 0.94087 0.94617 0.80559 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.94 71.98 0.57 -1.93 16 2 C -0.09 -1.69 3.66 -9.89 -0.04 -1.72 16 3 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 4 C 0.09 1.72 6.11 86.54 0.53 2.25 16 5 N -0.60 -15.34 3.32 -810.23 -2.69 -18.03 16 6 C 0.58 16.13 7.92 86.97 0.69 16.82 16 7 O -0.57 -20.04 16.69 -3.64 -0.06 -20.10 16 8 C 0.14 2.95 6.77 41.99 0.28 3.24 16 9 C -0.15 -2.82 9.32 22.71 0.21 -2.61 16 10 C 0.11 1.50 6.31 42.62 0.27 1.77 16 11 C 0.33 3.50 5.58 71.23 0.40 3.90 16 12 F -0.20 -2.87 17.27 44.97 0.78 -2.10 16 13 F -0.20 -2.86 17.27 44.97 0.78 -2.08 16 14 N -0.48 -5.45 10.35 -188.12 -1.95 -7.39 16 15 C 0.31 2.82 12.27 180.92 2.22 5.04 16 16 N -0.48 -7.09 6.81 -189.15 -1.29 -8.38 16 17 C 0.11 3.31 6.35 86.50 0.55 3.86 16 18 C -0.10 -2.83 3.11 -9.89 -0.03 -2.86 16 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 20 C 0.17 5.81 4.39 86.38 0.38 6.19 16 21 N -0.76 -35.13 5.26 -343.44 -1.81 -36.94 16 22 C -0.23 -12.90 10.47 84.03 0.88 -12.02 16 23 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 24 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 25 N -0.98 -63.36 13.97 21.65 0.30 -63.06 16 26 Si 0.95 46.76 27.74 68.60 1.90 48.66 16 27 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 29 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 30 H 0.05 1.08 6.85 -2.39 -0.02 1.07 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.15 6.71 -2.39 -0.02 1.14 16 33 H 0.14 1.99 5.18 -2.38 -0.01 1.98 16 34 H 0.08 1.41 7.83 -2.39 -0.02 1.39 16 35 H 0.16 3.25 7.74 -2.91 -0.02 3.23 16 36 H 0.18 0.51 8.12 -2.39 -0.02 0.49 16 37 H 0.26 -0.14 8.06 -2.91 -0.02 -0.16 16 38 H 0.08 2.43 7.78 -2.39 -0.02 2.41 16 39 H 0.06 2.13 7.89 -2.38 -0.02 2.11 16 40 H 0.04 1.43 6.58 -2.38 -0.02 1.42 16 41 H 0.04 1.26 6.89 -2.39 -0.02 1.24 16 42 H 0.36 16.38 5.42 -92.71 -0.50 15.88 16 43 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -76.73 360.93 3.86 -72.88 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.51 Total: 17.83 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.38 Total: 18.72 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.43 Total: -133.80 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.55 Total: -4.18 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -76.73 3.86 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271630554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.686 kcal (2) G-P(sol) polarization free energy of solvation -76.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds