Wall clock time and date at job start Tue Mar 31 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47374 * 2 1 4 4 N 1.28440 * 125.19007 * 275.44212 * 3 2 1 5 5 C 1.30835 * 110.97959 * 180.25453 * 4 3 2 6 6 C 1.39811 * 107.87780 * 359.73831 * 5 4 3 7 7 Cl 1.73596 * 127.33531 * 179.97438 * 6 5 4 8 8 C 1.36746 * 125.18682 * 95.24594 * 3 2 1 9 9 C 1.47035 * 126.90399 * 0.02562 * 8 3 2 10 10 O 1.21643 * 120.00112 * 263.19592 * 9 8 3 11 11 N 1.34775 * 119.99743 * 83.19206 * 9 8 3 12 12 C 1.46501 * 119.99828 * 184.65316 * 11 9 8 13 13 C 1.53003 * 109.47283 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47066 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46749 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00094 * 269.99762 * 15 14 13 17 17 H 1.08005 * 119.99673 * 140.79057 * 16 15 14 18 18 C 1.38806 * 120.00266 * 320.78794 * 16 15 14 19 19 N 1.31618 * 120.00213 * 339.27037 * 18 16 15 20 20 Si 1.86802 * 119.99993 * 159.27038 * 18 16 15 21 21 H 1.48496 * 109.47169 * 60.00264 * 20 18 16 22 22 H 1.48503 * 109.46906 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47058 * 299.99967 * 20 18 16 24 24 C 1.46504 * 119.99840 * 90.00233 * 15 14 13 25 25 C 1.53002 * 117.49698 * 183.13399 * 24 15 14 26 26 C 1.52995 * 117.50008 * 114.47423 * 24 15 14 27 27 H 1.09002 * 109.47419 * 59.99733 * 1 2 3 28 28 H 1.09000 * 109.47706 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46934 * 300.00106 * 1 2 3 30 30 H 1.08999 * 109.46654 * 240.00276 * 2 1 3 31 31 H 1.09001 * 109.47004 * 120.00603 * 2 1 3 32 32 H 1.08001 * 126.06005 * 179.75789 * 5 4 3 33 33 H 0.97000 * 120.00209 * 4.65011 * 11 9 8 34 34 H 1.09005 * 109.47472 * 59.99760 * 12 11 9 35 35 H 1.08994 * 109.47301 * 300.00059 * 12 11 9 36 36 H 1.08995 * 109.47142 * 59.99313 * 13 12 11 37 37 H 1.08999 * 109.46575 * 299.99802 * 13 12 11 38 38 H 1.08994 * 109.47463 * 299.99880 * 14 13 12 39 39 H 1.09003 * 109.47162 * 60.00100 * 14 13 12 40 40 H 0.97001 * 120.00251 * 175.00783 * 19 18 16 41 41 H 1.08995 * 115.55000 * 328.80278 * 24 15 14 42 42 H 1.09003 * 117.50282 * 359.97438 * 25 24 15 43 43 H 1.08999 * 117.49632 * 145.01958 * 25 24 15 44 44 H 1.09002 * 117.50375 * 214.98173 * 26 24 15 45 45 H 1.09004 * 117.50158 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1713 2.1122 -1.0449 5 6 2.6279 3.2960 -0.7257 6 6 2.7804 3.3369 0.6634 7 17 3.3535 4.6667 1.6209 8 6 2.3774 2.0900 1.1129 9 6 2.3478 1.6209 2.5061 10 8 1.3962 1.8846 3.2166 11 7 3.3749 0.8987 2.9959 12 6 3.3007 0.3449 4.3502 13 6 4.5867 -0.4251 4.6575 14 6 4.5095 -1.0029 6.0720 15 7 5.7406 -1.7406 6.3659 16 6 5.8257 -3.0754 6.0722 17 1 6.7438 -3.4837 5.6761 18 6 4.7320 -3.9037 6.2835 19 7 3.7808 -3.5381 7.1165 20 14 4.6102 -5.5372 5.3856 21 1 5.7764 -6.3853 5.7405 22 1 3.3566 -6.2276 5.7819 23 1 4.6005 -5.2970 3.9201 24 6 6.8807 -1.0503 6.9742 25 6 8.1625 -1.8576 7.1891 26 6 7.2904 -1.4723 8.3866 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.8477 4.0992 -1.4134 33 1 4.1632 0.7457 2.4518 34 1 2.4473 -0.3296 4.4208 35 1 3.1830 1.1561 5.0686 36 1 5.4398 0.2497 4.5870 37 1 4.7048 -1.2363 3.9391 38 1 4.3916 -0.1915 6.7901 39 1 3.6563 -1.6776 6.1428 40 1 2.9827 -4.0814 7.2099 41 1 6.9868 0.0025 6.7128 42 1 8.1575 -2.9023 6.8783 43 1 9.1119 -1.3357 7.0695 44 1 7.6663 -0.6971 9.0544 45 1 6.7114 -2.2632 8.8635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265163032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:33 Heat of formation + Delta-G solvation = 78.640071 kcal Electronic energy + Delta-G solvation = -27068.915003 eV Core-core repulsion = 23150.698561 eV Total energy + Delta-G solvation = -3918.216443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.89665 -39.47587 -37.16634 -36.81607 -35.43085 -34.87446 -33.63503 -31.93770 -30.97601 -30.10915 -29.34785 -25.70920 -24.54890 -23.92989 -22.62395 -21.83563 -21.46261 -21.10288 -20.10014 -19.64884 -18.30575 -16.71142 -16.41312 -16.28443 -15.79042 -15.59432 -15.40799 -14.92823 -14.76192 -14.56809 -14.19092 -14.08637 -13.68891 -13.34218 -13.22065 -12.70350 -12.51264 -12.29891 -12.09857 -11.97972 -11.91312 -11.72371 -11.61895 -11.09299 -10.89591 -10.83922 -10.75149 -10.72161 -10.40235 -10.26555 -10.04414 -9.70307 -9.61675 -9.58371 -9.29018 -9.09847 -9.01983 -8.53311 -6.60020 -5.85770 -3.51935 1.20872 1.51307 2.10853 2.20400 2.58646 3.05153 3.28247 3.35467 3.36179 4.12071 4.34615 4.38394 4.51729 4.61706 4.78527 4.90639 4.92512 5.05766 5.10768 5.22790 5.25807 5.37525 5.52001 5.63322 5.71157 5.87192 5.88986 5.90150 6.07282 6.17692 6.23272 6.28157 6.29661 6.47672 6.56141 6.59391 6.65852 6.98647 7.03684 7.21892 7.33241 7.53199 7.61290 7.72790 7.95664 8.42589 9.08330 9.69367 10.28402 11.09164 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.002893 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.392249 B = 9677.701029 C =11182.093965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.261 5.261 4 N -0.271 5.271 5 C 0.022 3.978 6 C -0.117 4.117 7 Cl -0.020 7.020 8 C -0.007 4.007 9 C 0.585 3.415 10 O -0.513 6.513 11 N -0.709 5.709 12 C 0.120 3.880 13 C -0.147 4.147 14 C 0.156 3.844 15 N -0.551 5.551 16 C -0.263 4.263 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.120 3.880 25 C -0.196 4.196 26 C -0.221 4.221 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.094 0.906 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 10.855 -14.448 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 N -0.049 5.049 4 N -0.101 5.101 5 C -0.156 4.156 6 C -0.155 4.155 7 Cl 0.009 6.991 8 C -0.138 4.138 9 C 0.366 3.634 10 O -0.387 6.387 11 N -0.360 5.360 12 C -0.003 4.003 13 C -0.187 4.187 14 C 0.029 3.971 15 N -0.268 5.268 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.184 4.184 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.011 3.989 25 C -0.234 4.234 26 C -0.262 4.262 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.211 0.789 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.634 10.166 -14.623 18.177 hybrid contribution 0.639 -0.301 0.075 0.711 sum -2.994 9.865 -14.548 17.830 Atomic orbital electron populations 1.22186 0.92850 1.04052 1.03866 1.22176 0.96711 0.75836 1.05864 1.45789 1.45150 1.12305 1.01704 1.73225 1.19181 1.04165 1.13518 1.23512 1.03622 0.95738 0.92735 1.21249 1.11044 0.90534 0.92700 1.98362 1.87079 1.43051 1.70633 1.21370 1.08786 0.93571 0.90043 1.16881 0.83558 0.78769 0.84166 1.90878 1.34118 1.55104 1.58567 1.46194 1.19221 1.52373 1.18191 1.21612 1.00405 0.97569 0.80751 1.22491 0.94171 0.98882 1.03164 1.20733 0.92200 0.94800 0.89397 1.43331 1.10328 1.05841 1.67262 1.18979 1.00132 0.83532 1.36639 0.91939 1.25222 0.99388 0.97313 0.96503 1.70071 1.09308 1.39972 1.32820 0.86523 0.77268 0.83999 0.79906 1.20594 1.21532 1.20873 1.21236 0.89840 0.93870 0.93935 1.23023 0.93843 1.01996 1.04524 1.23352 1.05584 1.04088 0.93143 0.91185 0.89564 0.91232 0.87259 0.87827 0.78861 0.76275 0.91042 0.91252 0.92852 0.91444 0.95133 0.88782 0.93415 0.89679 0.88526 0.90864 0.91303 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 0.98 6.91 -4.04 -0.03 0.95 16 3 N -0.26 -2.92 3.35 -57.11 -0.19 -3.11 16 4 N -0.27 -3.06 11.89 30.61 0.36 -2.70 16 5 C 0.02 0.23 12.04 -17.39 -0.21 0.02 16 6 C -0.12 -1.40 6.89 -38.88 -0.27 -1.67 16 7 Cl -0.02 -0.23 29.24 -51.86 -1.52 -1.74 16 8 C -0.01 -0.09 6.71 -82.00 -0.55 -0.64 16 9 C 0.59 8.39 6.91 -12.70 -0.09 8.31 16 10 O -0.51 -9.14 17.11 5.24 0.09 -9.05 16 11 N -0.71 -9.22 5.55 -61.51 -0.34 -9.56 16 12 C 0.12 1.79 5.68 -4.04 -0.02 1.77 16 13 C -0.15 -2.45 5.65 -26.73 -0.15 -2.60 16 14 C 0.16 3.28 5.34 -4.04 -0.02 3.25 16 15 N -0.55 -12.75 2.75 -165.67 -0.46 -13.20 16 16 C -0.26 -6.68 8.47 -15.06 -0.13 -6.81 16 17 H 0.06 1.60 6.75 -52.48 -0.35 1.25 16 18 C 0.02 0.44 4.95 -17.43 -0.09 0.35 16 19 N -0.88 -23.92 11.54 55.49 0.64 -23.28 16 20 Si 0.89 20.33 29.61 -169.99 -5.03 15.29 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16 25 C -0.20 -3.76 9.80 -26.69 -0.26 -4.02 16 26 C -0.22 -4.43 10.36 -26.70 -0.28 -4.71 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 32 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.40 4.47 8.46 -40.82 -0.35 4.13 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.09 2.26 5.61 -51.93 -0.29 1.97 16 40 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.10 2.03 6.46 -51.93 -0.34 1.70 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -30.03 395.96 -9.41 -39.44 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.77 Total: 6.75 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.16 Total: -4.80 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.02 Total: -51.86 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.03 -9.41 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265163032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.079 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds