Wall clock time and date at job start Tue Mar 31 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47374 * 2 1 4 4 N 1.28440 * 125.19007 * 275.44212 * 3 2 1 5 5 C 1.30835 * 110.97959 * 180.25453 * 4 3 2 6 6 C 1.39811 * 107.87780 * 359.73831 * 5 4 3 7 7 Cl 1.73596 * 127.33531 * 179.97438 * 6 5 4 8 8 C 1.36746 * 125.18682 * 95.24594 * 3 2 1 9 9 C 1.47035 * 126.90399 * 0.02562 * 8 3 2 10 10 O 1.21643 * 120.00112 * 263.19592 * 9 8 3 11 11 N 1.34775 * 119.99743 * 83.19206 * 9 8 3 12 12 C 1.46501 * 119.99828 * 184.65316 * 11 9 8 13 13 C 1.53003 * 109.47283 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47066 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46749 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00094 * 269.99762 * 15 14 13 17 17 H 1.08005 * 119.99673 * 140.79057 * 16 15 14 18 18 C 1.38806 * 120.00266 * 320.78794 * 16 15 14 19 19 N 1.31618 * 120.00213 * 339.27037 * 18 16 15 20 20 Si 1.86802 * 119.99993 * 159.27038 * 18 16 15 21 21 H 1.48496 * 109.47169 * 60.00264 * 20 18 16 22 22 H 1.48503 * 109.46906 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47058 * 299.99967 * 20 18 16 24 24 C 1.46504 * 119.99840 * 90.00233 * 15 14 13 25 25 C 1.53002 * 117.49698 * 183.13399 * 24 15 14 26 26 C 1.52995 * 117.50008 * 114.47423 * 24 15 14 27 27 H 1.09002 * 109.47419 * 59.99733 * 1 2 3 28 28 H 1.09000 * 109.47706 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46934 * 300.00106 * 1 2 3 30 30 H 1.08999 * 109.46654 * 240.00276 * 2 1 3 31 31 H 1.09001 * 109.47004 * 120.00603 * 2 1 3 32 32 H 1.08001 * 126.06005 * 179.75789 * 5 4 3 33 33 H 0.97000 * 120.00209 * 4.65011 * 11 9 8 34 34 H 1.09005 * 109.47472 * 59.99760 * 12 11 9 35 35 H 1.08994 * 109.47301 * 300.00059 * 12 11 9 36 36 H 1.08995 * 109.47142 * 59.99313 * 13 12 11 37 37 H 1.08999 * 109.46575 * 299.99802 * 13 12 11 38 38 H 1.08994 * 109.47463 * 299.99880 * 14 13 12 39 39 H 1.09003 * 109.47162 * 60.00100 * 14 13 12 40 40 H 0.97001 * 120.00251 * 175.00783 * 19 18 16 41 41 H 1.08995 * 115.55000 * 328.80278 * 24 15 14 42 42 H 1.09003 * 117.50282 * 359.97438 * 25 24 15 43 43 H 1.08999 * 117.49632 * 145.01958 * 25 24 15 44 44 H 1.09002 * 117.50375 * 214.98173 * 26 24 15 45 45 H 1.09004 * 117.50158 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1713 2.1122 -1.0449 5 6 2.6279 3.2960 -0.7257 6 6 2.7804 3.3369 0.6634 7 17 3.3535 4.6667 1.6209 8 6 2.3774 2.0900 1.1129 9 6 2.3478 1.6209 2.5061 10 8 1.3962 1.8846 3.2166 11 7 3.3749 0.8987 2.9959 12 6 3.3007 0.3449 4.3502 13 6 4.5867 -0.4251 4.6575 14 6 4.5095 -1.0029 6.0720 15 7 5.7406 -1.7406 6.3659 16 6 5.8257 -3.0754 6.0722 17 1 6.7438 -3.4837 5.6761 18 6 4.7320 -3.9037 6.2835 19 7 3.7808 -3.5381 7.1165 20 14 4.6102 -5.5372 5.3856 21 1 5.7764 -6.3853 5.7405 22 1 3.3566 -6.2276 5.7819 23 1 4.6005 -5.2970 3.9201 24 6 6.8807 -1.0503 6.9742 25 6 8.1625 -1.8576 7.1891 26 6 7.2904 -1.4723 8.3866 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.8477 4.0992 -1.4134 33 1 4.1632 0.7457 2.4518 34 1 2.4473 -0.3296 4.4208 35 1 3.1830 1.1561 5.0686 36 1 5.4398 0.2497 4.5870 37 1 4.7048 -1.2363 3.9391 38 1 4.3916 -0.1915 6.7901 39 1 3.6563 -1.6776 6.1428 40 1 2.9827 -4.0814 7.2099 41 1 6.9868 0.0025 6.7128 42 1 8.1575 -2.9023 6.8783 43 1 9.1119 -1.3357 7.0695 44 1 7.6663 -0.6971 9.0544 45 1 6.7114 -2.2632 8.8635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265163032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:32 Heat of formation + Delta-G solvation = 61.397387 kcal Electronic energy + Delta-G solvation = -27069.662702 eV Core-core repulsion = 23150.698561 eV Total energy + Delta-G solvation = -3918.964141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75941 -40.66648 -38.82999 -37.70891 -36.77266 -35.61778 -35.27512 -33.50378 -32.18223 -30.93327 -30.79831 -27.31941 -25.72113 -25.08695 -23.79973 -23.02653 -22.71813 -22.52802 -21.52810 -20.96959 -19.29588 -18.28579 -17.56808 -17.32627 -17.23109 -16.78516 -16.65322 -16.38748 -16.04909 -15.70575 -15.45685 -15.03792 -15.00128 -14.53294 -14.33251 -13.97839 -13.91486 -13.63840 -13.25368 -13.17141 -12.92423 -12.81762 -12.75765 -12.59934 -12.47234 -12.40197 -12.31682 -12.04846 -11.88897 -11.63148 -11.51405 -11.37354 -11.26621 -10.87345 -10.45613 -10.44974 -10.30645 -9.90696 -8.48181 -7.77331 -5.48619 0.27697 0.62780 1.09225 1.37250 1.46407 1.48614 1.54900 1.62111 2.00881 2.50473 3.16988 3.32763 3.39623 3.42391 3.52289 3.84234 3.85280 4.08574 4.15940 4.17267 4.19611 4.28960 4.34157 4.46813 4.55437 4.60868 4.61337 4.69555 4.75796 4.86515 4.96408 5.05330 5.08332 5.09684 5.10442 5.25130 5.37810 5.47069 5.49652 5.57335 5.70018 5.83036 6.22762 6.48471 6.76661 6.85055 7.18264 7.86233 8.38900 9.12114 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.002893 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.392249 B = 9677.701029 C =11182.093965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.258 5.258 4 N -0.276 5.276 5 C 0.027 3.973 6 C -0.124 4.124 7 Cl -0.020 7.020 8 C -0.026 4.026 9 C 0.592 3.408 10 O -0.553 6.553 11 N -0.696 5.696 12 C 0.133 3.867 13 C -0.123 4.123 14 C 0.155 3.845 15 N -0.568 5.568 16 C -0.263 4.263 17 H 0.058 0.942 18 C -0.029 4.029 19 N -0.913 5.913 20 Si 0.949 3.051 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.273 1.273 24 C 0.104 3.896 25 C -0.180 4.180 26 C -0.222 4.222 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.044 0.956 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.226 0.774 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.251 0.749 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 11.674 -16.384 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.047 5.047 4 N -0.106 5.106 5 C -0.150 4.150 6 C -0.162 4.162 7 Cl 0.009 6.991 8 C -0.157 4.157 9 C 0.375 3.625 10 O -0.429 6.429 11 N -0.347 5.347 12 C 0.009 3.991 13 C -0.163 4.163 14 C 0.029 3.971 15 N -0.286 5.286 16 C -0.393 4.393 17 H 0.076 0.924 18 C -0.227 4.227 19 N -0.556 5.556 20 Si 0.777 3.223 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.198 1.198 24 C -0.005 4.005 25 C -0.218 4.218 26 C -0.263 4.263 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.242 0.758 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.279 10.983 -16.590 20.027 hybrid contribution 0.275 -0.516 0.706 0.917 sum -2.004 10.467 -15.884 19.128 Atomic orbital electron populations 1.22149 0.92557 1.05045 1.02608 1.22448 0.96962 0.74947 1.06985 1.46032 1.44670 1.12891 1.01113 1.73240 1.19344 1.04615 1.13441 1.24030 1.02412 0.96083 0.92462 1.21450 1.11087 0.90233 0.93477 1.98360 1.87045 1.42944 1.70771 1.21163 1.10496 0.94441 0.89566 1.17014 0.82843 0.77992 0.84653 1.90858 1.35548 1.56694 1.59807 1.45979 1.19538 1.51701 1.17469 1.21306 0.99013 0.97046 0.81755 1.22120 0.95462 0.98768 0.99977 1.20646 0.90558 0.93996 0.91919 1.43551 1.11418 1.05556 1.68028 1.19140 0.99797 0.84737 1.35643 0.92439 1.25832 0.99433 1.00018 0.97391 1.70197 1.09731 1.41167 1.34463 0.85646 0.76640 0.80689 0.79305 1.20569 1.22200 1.19816 1.21561 0.89599 0.95275 0.94022 1.23020 0.94900 1.00926 1.02991 1.23263 1.05749 1.03785 0.93503 0.91064 0.87494 0.93703 0.84863 0.87977 0.75788 0.74842 0.92289 0.91507 0.91218 0.92280 0.95089 0.91988 0.94021 0.86902 0.90827 0.87155 0.88282 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 71.98 0.74 -1.79 16 2 C 0.10 1.66 6.91 86.38 0.60 2.25 16 3 N -0.26 -5.42 3.35 -334.60 -1.12 -6.54 16 4 N -0.28 -5.67 11.89 -57.06 -0.68 -6.35 16 5 C 0.03 0.51 12.04 85.22 1.03 1.53 16 6 C -0.12 -2.79 6.89 22.72 0.16 -2.63 16 7 Cl -0.02 -0.43 29.24 -2.72 -0.08 -0.51 16 8 C -0.03 -0.63 6.71 40.76 0.27 -0.36 16 9 C 0.59 16.77 6.91 86.55 0.60 17.36 16 10 O -0.55 -19.91 17.11 -4.17 -0.07 -19.98 16 11 N -0.70 -17.49 5.55 -466.75 -2.59 -20.08 16 12 C 0.13 3.92 5.68 86.38 0.49 4.41 16 13 C -0.12 -4.01 5.65 30.59 0.17 -3.84 16 14 C 0.16 6.58 5.34 86.38 0.46 7.04 16 15 N -0.57 -26.20 2.75 -678.05 -1.86 -28.06 16 16 C -0.26 -13.43 8.47 84.03 0.71 -12.71 16 17 H 0.06 2.96 6.75 -2.91 -0.02 2.94 16 18 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 19 N -0.91 -51.04 11.54 21.65 0.25 -50.79 16 20 Si 0.95 42.20 29.61 68.60 2.03 44.23 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C 0.10 4.09 6.56 44.99 0.30 4.39 16 25 C -0.18 -6.58 9.80 30.62 0.30 -6.28 16 26 C -0.22 -8.68 10.36 30.62 0.32 -8.36 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.63 7.65 -2.39 -0.02 1.61 16 32 H 0.23 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.41 8.55 8.46 -92.71 -0.78 7.76 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 39 H 0.06 3.08 5.61 -2.39 -0.01 3.06 16 40 H 0.25 13.69 8.32 -92.71 -0.77 12.92 16 41 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.07 3.04 6.46 -2.39 -0.02 3.03 16 43 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -65.77 395.96 2.66 -63.12 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.22 Total: 25.03 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.56 Total: -0.07 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -6.00 Total: -111.82 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -65.77 2.66 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265163032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.513 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds