Wall clock time and date at job start Tue Mar 31 2020 22:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34234 * 125.73970 * 2 1 4 4 C 1.38065 * 107.43988 * 179.84500 * 3 2 1 5 5 C 1.47386 * 126.42559 * 180.15814 * 4 3 2 6 6 O 1.21611 * 120.00094 * 180.27626 * 5 4 3 7 7 N 1.34776 * 119.99972 * 0.27490 * 5 4 3 8 8 C 1.46492 * 119.99973 * 174.76181 * 7 5 4 9 9 H 1.09006 * 109.47498 * 4.70921 * 8 7 5 10 10 C 1.52998 * 109.47225 * 124.70884 * 8 7 5 11 11 N 1.46502 * 109.47159 * 304.99961 * 10 8 7 12 12 C 1.36937 * 120.00557 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99482 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00386 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47294 * 60.00116 * 16 14 12 18 18 H 1.48504 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47058 * 299.99716 * 16 14 12 20 20 C 1.53006 * 109.47195 * 244.70890 * 8 7 5 21 21 C 1.54268 * 110.02896 * 181.53929 * 20 8 7 22 22 C 1.54891 * 104.19390 * 217.10356 * 21 20 8 23 23 C 1.54888 * 102.74790 * 37.93935 * 22 21 20 24 24 C 1.53869 * 110.03198 * 64.37133 * 20 8 7 25 25 C 1.41393 * 107.15225 * 0.41149 * 4 3 2 26 26 Cl 1.73599 * 126.00628 * 179.76863 * 25 4 3 27 27 N 1.30533 * 107.99158 * 359.74486 * 25 4 3 28 28 H 1.08998 * 109.47358 * 269.71863 * 1 2 3 29 29 H 1.09007 * 109.47061 * 29.71909 * 1 2 3 30 30 H 1.09003 * 109.46946 * 149.71884 * 1 2 3 31 31 H 1.08001 * 126.27879 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99630 * 354.76372 * 7 5 4 33 33 H 1.09001 * 109.47450 * 65.00069 * 10 8 7 34 34 H 1.08998 * 109.47662 * 185.00199 * 10 8 7 35 35 H 0.97003 * 119.99656 * 359.97438 * 11 10 8 36 36 H 0.97002 * 120.00313 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.01197 * 302.97987 * 20 8 7 38 38 H 1.08991 * 110.49022 * 335.78062 * 21 20 8 39 39 H 1.09000 * 110.48472 * 98.43029 * 21 20 8 40 40 H 1.09000 * 110.75594 * 279.63162 * 22 21 20 41 41 H 1.08996 * 110.76061 * 156.26064 * 22 21 20 42 42 H 1.09004 * 110.48970 * 203.37732 * 23 22 21 43 43 H 1.09011 * 110.59630 * 80.79562 * 23 22 21 44 44 H 1.09004 * 110.03132 * 238.56892 * 24 20 8 45 45 H 1.08993 * 110.03337 * 359.95108 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5599 0.6560 0.0036 5 6 4.7631 1.5072 0.0081 6 8 5.8678 0.9986 0.0059 7 7 4.6392 2.8492 0.0148 8 6 5.8298 3.6941 0.1351 9 1 6.7223 3.0683 0.1237 10 6 5.8799 4.6750 -1.0380 11 7 5.8160 3.9319 -2.2990 12 6 5.8451 4.6036 -3.4919 13 1 5.9155 5.6813 -3.5032 14 6 5.7840 3.8995 -4.6866 15 7 5.6977 2.5862 -4.6728 16 14 5.8244 4.8158 -6.3139 17 1 7.0891 5.5872 -6.4164 18 1 5.7471 3.8419 -7.4324 19 1 4.6695 5.7465 -6.3866 20 6 5.7708 4.4743 1.4500 21 6 7.0005 5.3978 1.5721 22 6 7.3632 5.3504 3.0772 23 6 7.0938 3.8707 3.4472 24 6 5.8302 3.5033 2.6421 25 6 3.5316 -0.7576 -0.0040 26 17 4.9152 -1.8060 -0.0090 27 7 2.2823 -1.1358 -0.0060 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3633 0.8926 -0.5095 30 1 -0.3633 -0.8875 -0.5182 31 1 1.9157 2.1168 -0.0004 32 1 3.7616 3.2556 -0.0602 33 1 5.0335 5.3590 -0.9762 34 1 6.8095 5.2427 -0.9977 35 1 5.7532 2.9639 -2.2888 36 1 5.6554 2.0941 -5.5077 37 1 4.8547 5.0633 1.4934 38 1 7.8247 5.0174 0.9689 39 1 6.7452 6.4145 1.2731 40 1 6.7180 6.0156 3.6511 41 1 8.4127 5.6020 3.2298 42 1 6.9068 3.7727 4.5166 43 1 7.9327 3.2419 3.1484 44 1 4.9434 3.6217 3.2647 45 1 5.9002 2.4763 2.2840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484013263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:42 Heat of formation + Delta-G solvation = 38.716937 kcal Electronic energy + Delta-G solvation = -28009.098759 eV Core-core repulsion = 24089.151119 eV Total energy + Delta-G solvation = -3919.947640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44635 -39.47876 -37.74678 -36.56536 -35.18145 -33.45227 -33.31464 -31.52089 -30.36841 -29.36114 -28.50692 -27.16657 -26.09654 -23.59431 -22.60776 -21.46396 -20.95555 -20.37555 -19.97658 -19.54728 -17.75161 -17.06258 -16.19748 -15.93388 -15.84823 -15.28817 -15.11327 -14.94374 -14.44603 -14.10217 -13.86597 -13.47592 -13.39175 -13.21653 -13.11216 -12.95259 -12.82877 -12.48279 -12.01985 -11.60870 -11.51064 -11.32031 -11.19124 -10.97810 -10.91802 -10.83624 -10.76096 -10.66497 -10.56746 -10.42913 -10.21127 -10.01434 -9.64982 -9.42854 -9.39674 -8.81736 -8.76275 -8.42009 -6.83950 -5.67377 -2.97039 1.41363 1.48367 2.02980 2.68277 3.46391 3.51063 3.52666 3.61097 3.79629 4.29183 4.50266 4.61263 4.74246 4.77441 4.82605 4.87471 5.05380 5.12177 5.24458 5.31263 5.43488 5.57131 5.61957 5.63551 5.68935 5.76832 5.80604 5.89302 5.97661 5.99779 6.06787 6.12441 6.21566 6.36818 6.39923 6.44714 6.56021 6.58085 6.60055 6.78435 7.09342 7.24257 7.74276 7.99237 8.49913 8.75980 9.61229 10.21138 10.56272 11.54249 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.006539 B = 0.004985 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4280.672003 B = 5615.875537 C = 8352.890170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.352 5.352 3 C 0.110 3.890 4 C -0.263 4.263 5 C 0.595 3.405 6 O -0.526 6.526 7 N -0.709 5.709 8 C 0.140 3.860 9 H 0.102 0.898 10 C 0.144 3.856 11 N -0.728 5.728 12 C -0.241 4.241 13 H 0.068 0.932 14 C -0.012 4.012 15 N -0.927 5.927 16 Si 0.904 3.096 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.288 1.288 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.174 3.826 26 Cl 0.032 6.968 27 N -0.290 5.290 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.393 0.607 33 H 0.017 0.983 34 H 0.030 0.970 35 H 0.388 0.612 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -0.509 17.420 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.133 5.133 3 C -0.041 4.041 4 C -0.278 4.278 5 C 0.381 3.619 6 O -0.402 6.402 7 N -0.359 5.359 8 C 0.036 3.964 9 H 0.120 0.880 10 C 0.015 3.985 11 N -0.373 5.373 12 C -0.373 4.373 13 H 0.086 0.914 14 C -0.208 4.208 15 N -0.575 5.575 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.214 1.214 20 C -0.116 4.116 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.018 4.018 26 Cl 0.060 6.940 27 N -0.115 5.115 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.207 0.793 32 H 0.226 0.774 33 H 0.035 0.965 34 H 0.048 0.952 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.573 -1.868 17.291 19.853 hybrid contribution -0.020 0.998 -1.184 1.549 sum -9.593 -0.871 16.107 18.768 Atomic orbital electron populations 1.22055 0.72895 1.05387 1.03937 1.48106 1.07011 1.03174 1.54984 1.23107 0.89798 0.93972 0.97251 1.20247 0.93614 0.92456 1.21500 1.16968 0.87279 0.81725 0.75899 1.90811 1.26181 1.73508 1.49704 1.45552 1.10140 1.05235 1.74958 1.21431 0.89342 0.92108 0.93559 0.87978 1.21011 0.98277 0.93182 0.86014 1.42317 1.88914 1.06426 0.99620 1.19145 1.42833 0.91120 0.84181 0.91430 1.24741 1.03103 0.95450 0.97548 1.69684 1.57011 1.04913 1.25908 0.86323 0.77754 0.78406 0.83989 1.21315 1.21777 1.21446 1.22089 0.98909 0.96204 0.94399 1.22396 0.97707 0.99301 0.96032 1.22491 1.00741 0.96507 0.96421 1.22351 0.98296 0.96425 0.99117 1.22159 0.97343 1.00042 0.95984 1.22657 0.89346 0.90362 0.99471 1.98426 1.34545 1.64587 1.96425 1.77196 1.00179 1.07504 1.26605 0.90064 0.88600 0.88683 0.79274 0.77413 0.96522 0.95237 0.77785 0.93543 0.91061 0.90871 0.91484 0.91918 0.91876 0.92341 0.91624 0.92556 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.44 59.85 0.68 1.27 16 2 N -0.35 -4.04 3.98 -67.60 -0.27 -4.31 16 3 C 0.11 1.28 10.99 -16.56 -0.18 1.10 16 4 C -0.26 -4.18 6.13 -105.04 -0.64 -4.82 16 5 C 0.60 10.66 7.10 -12.54 -0.09 10.57 16 6 O -0.53 -11.26 15.04 5.27 0.08 -11.18 16 7 N -0.71 -11.02 4.01 -54.89 -0.22 -11.24 16 8 C 0.14 2.29 1.71 -67.93 -0.12 2.17 16 9 H 0.10 1.97 6.91 -51.93 -0.36 1.62 16 10 C 0.14 2.81 5.59 -4.04 -0.02 2.78 16 11 N -0.73 -18.59 5.43 -59.91 -0.33 -18.91 16 12 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 13 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 16 Si 0.90 22.69 29.55 -169.99 -5.02 17.67 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C -0.10 -1.21 2.71 -89.50 -0.24 -1.45 16 21 C -0.12 -1.39 5.32 -25.07 -0.13 -1.52 16 22 C -0.12 -1.28 6.91 -24.74 -0.17 -1.45 16 23 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 24 C -0.12 -1.42 6.24 -25.62 -0.16 -1.58 16 25 C 0.17 2.92 7.88 -16.90 -0.13 2.78 16 26 Cl 0.03 0.54 28.00 -51.86 -1.45 -0.91 16 27 N -0.29 -4.39 12.50 33.18 0.41 -3.97 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.19 1.40 7.47 -52.49 -0.39 1.00 16 32 H 0.39 5.08 7.77 -40.82 -0.32 4.76 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.03 0.59 7.16 -51.93 -0.37 0.22 16 35 H 0.39 10.85 7.31 -40.82 -0.30 10.55 16 36 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -36.27 383.96 -8.59 -44.86 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.68 Total: 9.49 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.63 Total: 0.91 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: 0.32 Total: -66.62 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -1.45 Total: -0.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.27 -8.59 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484013263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.578 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds