Wall clock time and date at job start Tue Mar 31 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34234 * 125.73970 * 2 1 4 4 C 1.38065 * 107.43988 * 179.84500 * 3 2 1 5 5 C 1.47386 * 126.42559 * 180.15814 * 4 3 2 6 6 O 1.21611 * 120.00094 * 180.27626 * 5 4 3 7 7 N 1.34776 * 119.99972 * 0.27490 * 5 4 3 8 8 C 1.46492 * 119.99973 * 174.76181 * 7 5 4 9 9 H 1.09006 * 109.47498 * 4.70921 * 8 7 5 10 10 C 1.52998 * 109.47225 * 124.70884 * 8 7 5 11 11 N 1.46502 * 109.47159 * 304.99961 * 10 8 7 12 12 C 1.36937 * 120.00557 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99482 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00386 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47294 * 60.00116 * 16 14 12 18 18 H 1.48504 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47058 * 299.99716 * 16 14 12 20 20 C 1.53006 * 109.47195 * 244.70890 * 8 7 5 21 21 C 1.54268 * 110.02896 * 181.53929 * 20 8 7 22 22 C 1.54891 * 104.19390 * 217.10356 * 21 20 8 23 23 C 1.54888 * 102.74790 * 37.93935 * 22 21 20 24 24 C 1.53869 * 110.03198 * 64.37133 * 20 8 7 25 25 C 1.41393 * 107.15225 * 0.41149 * 4 3 2 26 26 Cl 1.73599 * 126.00628 * 179.76863 * 25 4 3 27 27 N 1.30533 * 107.99158 * 359.74486 * 25 4 3 28 28 H 1.08998 * 109.47358 * 269.71863 * 1 2 3 29 29 H 1.09007 * 109.47061 * 29.71909 * 1 2 3 30 30 H 1.09003 * 109.46946 * 149.71884 * 1 2 3 31 31 H 1.08001 * 126.27879 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99630 * 354.76372 * 7 5 4 33 33 H 1.09001 * 109.47450 * 65.00069 * 10 8 7 34 34 H 1.08998 * 109.47662 * 185.00199 * 10 8 7 35 35 H 0.97003 * 119.99656 * 359.97438 * 11 10 8 36 36 H 0.97002 * 120.00313 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.01197 * 302.97987 * 20 8 7 38 38 H 1.08991 * 110.49022 * 335.78062 * 21 20 8 39 39 H 1.09000 * 110.48472 * 98.43029 * 21 20 8 40 40 H 1.09000 * 110.75594 * 279.63162 * 22 21 20 41 41 H 1.08996 * 110.76061 * 156.26064 * 22 21 20 42 42 H 1.09004 * 110.48970 * 203.37732 * 23 22 21 43 43 H 1.09011 * 110.59630 * 80.79562 * 23 22 21 44 44 H 1.09004 * 110.03132 * 238.56892 * 24 20 8 45 45 H 1.08993 * 110.03337 * 359.95108 * 24 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5599 0.6560 0.0036 5 6 4.7631 1.5072 0.0081 6 8 5.8678 0.9986 0.0059 7 7 4.6392 2.8492 0.0148 8 6 5.8298 3.6941 0.1351 9 1 6.7223 3.0683 0.1237 10 6 5.8799 4.6750 -1.0380 11 7 5.8160 3.9319 -2.2990 12 6 5.8451 4.6036 -3.4919 13 1 5.9155 5.6813 -3.5032 14 6 5.7840 3.8995 -4.6866 15 7 5.6977 2.5862 -4.6728 16 14 5.8244 4.8158 -6.3139 17 1 7.0891 5.5872 -6.4164 18 1 5.7471 3.8419 -7.4324 19 1 4.6695 5.7465 -6.3866 20 6 5.7708 4.4743 1.4500 21 6 7.0005 5.3978 1.5721 22 6 7.3632 5.3504 3.0772 23 6 7.0938 3.8707 3.4472 24 6 5.8302 3.5033 2.6421 25 6 3.5316 -0.7576 -0.0040 26 17 4.9152 -1.8060 -0.0090 27 7 2.2823 -1.1358 -0.0060 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3633 0.8926 -0.5095 30 1 -0.3633 -0.8875 -0.5182 31 1 1.9157 2.1168 -0.0004 32 1 3.7616 3.2556 -0.0602 33 1 5.0335 5.3590 -0.9762 34 1 6.8095 5.2427 -0.9977 35 1 5.7532 2.9639 -2.2888 36 1 5.6554 2.0941 -5.5077 37 1 4.8547 5.0633 1.4934 38 1 7.8247 5.0174 0.9689 39 1 6.7452 6.4145 1.2731 40 1 6.7180 6.0156 3.6511 41 1 8.4127 5.6020 3.2298 42 1 6.9068 3.7727 4.5166 43 1 7.9327 3.2419 3.1484 44 1 4.9434 3.6217 3.2647 45 1 5.9002 2.4763 2.2840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484013263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:41 Heat of formation + Delta-G solvation = 13.328859 kcal Electronic energy + Delta-G solvation = -28010.199669 eV Core-core repulsion = 24089.151119 eV Total energy + Delta-G solvation = -3921.048549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50184 -40.73382 -38.90839 -37.79327 -36.76652 -35.15553 -34.21148 -33.15339 -31.84845 -30.58169 -29.45440 -27.98596 -27.62153 -25.24426 -24.04208 -22.69169 -22.06108 -21.47961 -21.14643 -20.61351 -19.23105 -18.71310 -17.41799 -16.96873 -16.87359 -16.69204 -16.29662 -16.10541 -16.00880 -15.34295 -15.12923 -14.98061 -14.85820 -14.42297 -14.17828 -14.05860 -13.90497 -13.57439 -13.47697 -12.96036 -12.78441 -12.63882 -12.61126 -12.52901 -12.24299 -12.12577 -11.88621 -11.87529 -11.82923 -11.75183 -11.56393 -11.37807 -11.29628 -10.94558 -10.73533 -10.49730 -9.96680 -9.64657 -8.93803 -7.88510 -5.18141 0.40011 0.44221 0.79329 1.47074 1.50993 1.56992 1.75551 2.35066 2.50998 2.58826 3.39110 3.44149 3.63194 3.75584 3.80258 3.88883 4.15629 4.18724 4.26732 4.32694 4.45274 4.46630 4.48660 4.65751 4.67718 4.72558 4.78913 4.81683 4.83006 4.89876 4.93193 5.02230 5.11676 5.15598 5.27535 5.33783 5.40855 5.52641 5.55172 5.59089 5.72928 5.78724 6.17001 6.30503 6.75903 7.37354 7.47430 8.16405 8.38377 9.34051 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.006539 B = 0.004985 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4280.672003 B = 5615.875537 C = 8352.890170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.340 5.340 3 C 0.139 3.861 4 C -0.303 4.303 5 C 0.591 3.409 6 O -0.575 6.575 7 N -0.697 5.697 8 C 0.153 3.847 9 H 0.063 0.937 10 C 0.143 3.857 11 N -0.742 5.742 12 C -0.240 4.240 13 H 0.079 0.921 14 C -0.078 4.078 15 N -0.970 5.970 16 Si 0.972 3.028 17 H -0.280 1.280 18 H -0.301 1.301 19 H -0.272 1.272 20 C -0.085 4.085 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.113 4.113 25 C 0.151 3.849 26 Cl 0.012 6.988 27 N -0.310 5.310 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.239 0.761 32 H 0.408 0.592 33 H 0.039 0.961 34 H 0.030 0.970 35 H 0.372 0.628 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 2.536 18.640 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.119 5.119 3 C -0.014 4.014 4 C -0.319 4.319 5 C 0.379 3.621 6 O -0.455 6.455 7 N -0.348 5.348 8 C 0.047 3.953 9 H 0.081 0.919 10 C 0.016 3.984 11 N -0.385 5.385 12 C -0.372 4.372 13 H 0.097 0.903 14 C -0.270 4.270 15 N -0.621 5.621 16 Si 0.801 3.199 17 H -0.207 1.207 18 H -0.228 1.228 19 H -0.198 1.198 20 C -0.105 4.105 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.163 4.163 24 C -0.151 4.151 25 C -0.041 4.041 26 Cl 0.040 6.960 27 N -0.136 5.136 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.244 0.756 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.204 0.796 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.325 1.231 18.552 22.307 hybrid contribution 0.720 0.088 -1.498 1.664 sum -11.604 1.319 17.054 20.670 Atomic orbital electron populations 1.22617 0.69434 1.07186 1.06198 1.48618 1.08653 1.02106 1.52538 1.23708 0.88066 0.95769 0.93899 1.20233 0.94704 0.91970 1.24977 1.17320 0.87383 0.82375 0.74995 1.90775 1.28207 1.74417 1.52097 1.45397 1.10589 1.04557 1.74213 1.21211 0.88415 0.91142 0.94500 0.91872 1.21214 0.98803 0.93664 0.84716 1.42550 1.88862 1.05954 1.01100 1.19615 1.40600 0.91757 0.85198 0.90271 1.25575 1.04038 0.96159 1.01193 1.69885 1.59403 1.06708 1.26090 0.85232 0.78268 0.77065 0.79299 1.20662 1.22798 1.19787 1.22041 1.00388 0.96038 0.92047 1.22425 0.96632 0.99545 0.97204 1.22463 1.01659 0.96055 0.95072 1.22363 0.97137 0.96844 0.99991 1.22103 0.98827 0.98063 0.96083 1.22791 0.89517 0.90751 1.00998 1.98401 1.35844 1.65161 1.96592 1.77117 0.99872 1.09564 1.27035 0.87507 0.85247 0.88515 0.74495 0.75611 0.94309 0.95226 0.79649 0.94444 0.88524 0.93178 0.90201 0.89842 0.91263 0.90555 0.93449 0.90428 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.44 127.77 1.46 2.15 16 2 N -0.34 -6.98 3.98 -367.77 -1.46 -8.44 16 3 C 0.14 2.89 10.99 84.28 0.93 3.82 16 4 C -0.30 -9.70 6.13 -20.13 -0.12 -9.83 16 5 C 0.59 21.92 7.10 86.65 0.62 22.53 16 6 O -0.58 -26.48 15.04 -4.07 -0.06 -26.54 16 7 N -0.70 -21.42 4.01 -445.84 -1.79 -23.21 16 8 C 0.15 4.99 1.71 44.99 0.08 5.06 16 9 H 0.06 2.60 6.91 -2.38 -0.02 2.58 16 10 C 0.14 5.48 5.59 86.38 0.48 5.96 16 11 N -0.74 -38.16 5.43 -343.45 -1.87 -40.03 16 12 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 13 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 15 N -0.97 -62.02 13.06 21.65 0.28 -61.74 16 16 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 C -0.09 -1.99 2.71 -10.07 -0.03 -2.02 16 21 C -0.12 -2.67 5.32 31.67 0.17 -2.50 16 22 C -0.12 -2.09 6.91 31.89 0.22 -1.87 16 23 C -0.13 -2.61 6.83 31.67 0.22 -2.39 16 24 C -0.11 -2.59 6.24 31.32 0.20 -2.40 16 25 C 0.15 5.23 7.88 85.66 0.67 5.90 16 26 Cl 0.01 0.44 28.00 -2.72 -0.08 0.36 16 27 N -0.31 -9.32 12.50 -48.95 -0.61 -9.93 16 28 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.24 2.35 7.47 -2.91 -0.02 2.33 16 32 H 0.41 9.65 7.77 -92.71 -0.72 8.93 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 1.16 7.16 -2.39 -0.02 1.14 16 35 H 0.37 21.44 7.31 -92.71 -0.68 20.77 16 36 H 0.25 15.47 8.31 -92.71 -0.77 14.69 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.34 7.52 -2.39 -0.02 1.32 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.04 1.14 6.87 -2.39 -0.02 1.13 16 Total: -1.00 -83.84 383.96 2.26 -81.57 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.37 Total: 31.38 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 6.19 Total: 7.77 kcal Atomic # 7 Polarization: -137.90 SS G_CDS: -5.45 Total: -143.35 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.06 Total: -26.54 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -0.08 Total: 0.36 kcal Total: -83.84 2.26 -81.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484013263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.899 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds