Wall clock time and date at job start Tue Mar 31 2020 23:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 C 1.50702 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66451 * 90.28312 * 4 3 2 6 6 C 1.42270 * 103.92336 * 180.08740 * 5 4 3 7 7 C 1.48326 * 126.94185 * 179.90952 * 6 5 4 8 8 O 1.21494 * 119.99985 * 359.71397 * 7 6 5 9 9 N 1.34784 * 120.00252 * 179.71394 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72903 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00158 * 66.04534 * 12 11 10 14 14 C 1.46901 * 110.99908 * 189.99788 * 12 11 10 15 15 C 1.50702 * 109.47163 * 170.00000 * 14 12 11 16 16 O 1.21295 * 119.99952 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99914 * 179.97438 * 15 14 12 18 18 C 1.37099 * 120.00025 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00024 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00152 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00029 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47035 * 89.99822 * 22 20 18 24 24 H 1.48496 * 109.47057 * 209.99923 * 22 20 18 25 25 H 1.48504 * 109.46974 * 330.00157 * 22 20 18 26 26 N 1.30992 * 106.12221 * 359.65502 * 6 5 4 27 27 O 1.20902 * 111.43743 * 0.22153 * 26 6 5 28 28 H 1.09002 * 109.47184 * 300.00169 * 1 2 3 29 29 H 1.09004 * 109.46875 * 60.00210 * 1 2 3 30 30 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47099 * 60.00199 * 3 2 1 32 32 H 1.08998 * 109.47093 * 299.99548 * 3 2 1 33 33 H 1.08002 * 128.04093 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 38 38 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 39 39 H 1.09001 * 109.47499 * 59.99896 * 13 12 11 40 40 H 1.09003 * 109.47356 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47241 * 299.99653 * 13 12 11 42 42 H 1.08998 * 109.47140 * 289.99501 * 14 12 11 43 43 H 1.08995 * 109.47447 * 50.00165 * 14 12 11 44 44 H 0.97000 * 120.00257 * 0.02562 * 17 15 14 45 45 H 0.96997 * 119.99676 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3189 1.1278 -1.0844 6 6 5.6263 1.0195 -0.5339 7 6 6.9031 0.9192 -1.2821 8 8 6.8968 0.9196 -2.4970 9 7 8.0702 0.8276 -0.6142 10 6 9.3307 0.7226 -1.3532 11 6 10.4952 0.6319 -0.3650 12 7 11.7592 0.5260 -1.1060 13 6 12.0337 1.7579 -1.8576 14 6 12.8723 0.2002 -0.2045 15 6 14.0943 -0.1407 -1.0178 16 8 14.0431 -0.1145 -2.2294 17 7 15.2443 -0.4739 -0.3990 18 6 16.3558 -0.7846 -1.1389 19 1 16.3101 -0.7620 -2.2177 20 6 17.5413 -1.1285 -0.5009 21 7 17.5969 -1.1565 0.8117 22 14 19.0560 -1.5511 -1.5092 23 1 19.8413 -0.3168 -1.7639 24 1 19.8923 -2.5245 -0.7619 25 1 18.6386 -2.1481 -2.8033 26 7 5.4752 1.0318 0.7672 27 8 4.3099 1.1239 1.0759 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.0357 1.1549 -2.1263 34 1 8.0750 0.8269 0.3558 35 1 9.3131 -0.1716 -1.9765 36 1 9.4566 1.6027 -1.9840 37 1 10.5130 1.5259 0.2585 38 1 10.3692 -0.2483 0.2653 39 1 12.1034 2.5976 -1.1660 40 1 12.9753 1.6526 -2.3966 41 1 11.2264 1.9380 -2.5675 42 1 13.0874 1.0585 0.4320 43 1 12.5993 -0.6531 0.4163 44 1 15.2853 -0.4945 0.5699 45 1 18.4245 -1.3962 1.2570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663291759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:19 Heat of formation + Delta-G solvation = -34.827774 kcal Electronic energy + Delta-G solvation = -27796.278480 eV Core-core repulsion = 23432.432538 eV Total energy + Delta-G solvation = -4363.845942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.57205 -39.92233 -38.65131 -38.60335 -36.84462 -34.84121 -34.49186 -33.81808 -33.17252 -31.24963 -29.69136 -28.38592 -27.73221 -26.26094 -25.84186 -24.79664 -23.59926 -22.97470 -21.29433 -20.40313 -19.16906 -18.43718 -18.37126 -17.84600 -17.23420 -16.90546 -16.53898 -16.33963 -16.06011 -15.86975 -15.57724 -15.07176 -14.81073 -14.61089 -14.30038 -14.07478 -13.92799 -13.59206 -13.45981 -13.32735 -13.04940 -12.87894 -12.18850 -12.13773 -12.08134 -11.88844 -11.53099 -11.43196 -11.28403 -11.10016 -10.94463 -10.90161 -10.62789 -10.46288 -10.38186 -10.21192 -10.16099 -9.47537 -9.36185 -8.48632 -7.98997 -7.89561 -6.41261 -3.82004 0.59435 1.10341 2.26658 2.54476 2.82029 3.18497 3.27294 3.31498 3.33442 3.49480 3.89869 3.92426 4.09331 4.27683 4.31726 4.45416 4.56277 4.71404 4.72515 4.74803 4.86801 4.94305 4.96577 5.09007 5.10775 5.25047 5.34981 5.37271 5.62009 5.67315 5.78042 5.83466 5.91771 5.98516 6.07574 6.27379 6.32152 6.54533 7.02382 7.19616 7.30143 7.50236 7.55958 7.76274 8.06808 8.62226 9.18739 9.54691 10.06528 10.76498 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.001406 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.980603 B =19906.075678 C =20190.534235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.144 3.856 4 C -0.039 4.039 5 C -0.153 4.153 6 C -0.026 4.026 7 C 0.599 3.401 8 O -0.517 6.517 9 N -0.711 5.711 10 C 0.121 3.879 11 C 0.044 3.956 12 N -0.514 5.514 13 C 0.017 3.983 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 N -0.323 5.323 27 O 0.133 5.867 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.185 0.815 34 H 0.406 0.594 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.016 0.984 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.363 7.110 4.001 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.067 3.933 4 C -0.102 4.102 5 C -0.175 4.175 6 C -0.185 4.185 7 C 0.382 3.618 8 O -0.391 6.391 9 N -0.363 5.363 10 C -0.002 4.002 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 N -0.022 5.022 27 O 0.055 5.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.202 0.798 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.201 6.448 3.046 32.981 hybrid contribution 0.387 0.620 0.643 0.973 sum -31.814 7.068 3.689 32.798 Atomic orbital electron populations 1.22841 0.79499 1.03644 1.00526 1.87986 1.20713 1.26141 1.95579 1.20665 0.82910 0.86344 1.03371 1.23936 0.95124 1.05492 0.85651 1.22509 0.89669 1.03706 1.01654 1.23536 0.96945 1.07887 0.90095 1.16770 0.81405 0.77315 0.86344 1.90838 1.86375 1.49499 1.12349 1.45787 1.06003 1.73595 1.10961 1.21464 0.80397 1.03802 0.94559 1.22249 0.89910 1.01289 0.95087 1.61441 1.00495 1.35864 1.26056 1.22641 1.04514 0.88219 0.97669 1.21872 0.91431 1.00873 0.94252 1.19696 0.84147 0.84607 0.88674 1.90493 1.84250 1.57384 1.13918 1.41855 1.08887 1.59963 1.09328 1.19707 0.87465 1.42717 0.92956 0.87880 1.25253 0.99341 0.97453 0.95841 1.69612 1.28449 1.48805 1.07495 0.85861 0.80691 0.78278 0.79487 1.20440 1.20934 1.19380 1.74193 0.97401 1.15007 1.15620 1.84787 1.11342 1.65150 1.33266 0.93411 0.93426 0.88919 0.90239 0.89155 0.79791 0.75913 0.89666 0.90595 0.94376 0.90095 0.96574 0.88288 0.91840 0.93289 0.89268 0.77498 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 11.01 101.05 1.11 1.20 16 2 O -0.39 -2.37 10.69 -35.23 -0.38 -2.74 16 3 C 0.14 0.59 6.50 36.01 0.23 0.82 16 4 C -0.04 -0.28 7.10 -35.35 -0.25 -0.53 16 5 C -0.15 -1.31 10.92 -39.08 -0.43 -1.74 16 6 C -0.03 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 7.55 7.85 -12.11 -0.10 7.45 16 8 O -0.52 -8.05 16.95 5.37 0.09 -7.95 16 9 N -0.71 -7.87 5.55 -61.09 -0.34 -8.21 16 10 C 0.12 1.49 5.60 -4.04 -0.02 1.47 16 11 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 12 N -0.51 -8.49 4.50 -244.37 -1.10 -9.59 16 13 C 0.02 0.28 8.96 60.06 0.54 0.82 16 14 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 15 C 0.44 10.44 7.47 -10.98 -0.08 10.35 16 16 O -0.58 -15.51 13.91 5.54 0.08 -15.43 16 17 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 N -0.32 -3.33 11.84 33.29 0.39 -2.94 16 27 O 0.13 1.18 11.18 17.24 0.19 1.37 16 28 H 0.05 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.41 3.74 8.23 -40.82 -0.34 3.40 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.98 6.56 -51.93 -0.34 0.64 16 37 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 41 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 42 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -34.64 389.74 -5.62 -40.26 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.20 Total: 9.07 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 0.13 Total: 12.32 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.38 Total: -58.85 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.02 Total: -24.76 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.64 -5.62 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663291759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.432 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds