Wall clock time and date at job start Tue Mar 31 2020 23:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 C 1.50702 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66451 * 90.28312 * 4 3 2 6 6 C 1.42270 * 103.92336 * 180.08740 * 5 4 3 7 7 C 1.48326 * 126.94185 * 179.90952 * 6 5 4 8 8 O 1.21494 * 119.99985 * 359.71397 * 7 6 5 9 9 N 1.34784 * 120.00252 * 179.71394 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72903 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00158 * 66.04534 * 12 11 10 14 14 C 1.46901 * 110.99908 * 189.99788 * 12 11 10 15 15 C 1.50702 * 109.47163 * 170.00000 * 14 12 11 16 16 O 1.21295 * 119.99952 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99914 * 179.97438 * 15 14 12 18 18 C 1.37099 * 120.00025 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00024 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00152 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00029 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47035 * 89.99822 * 22 20 18 24 24 H 1.48496 * 109.47057 * 209.99923 * 22 20 18 25 25 H 1.48504 * 109.46974 * 330.00157 * 22 20 18 26 26 N 1.30992 * 106.12221 * 359.65502 * 6 5 4 27 27 O 1.20902 * 111.43743 * 0.22153 * 26 6 5 28 28 H 1.09002 * 109.47184 * 300.00169 * 1 2 3 29 29 H 1.09004 * 109.46875 * 60.00210 * 1 2 3 30 30 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47099 * 60.00199 * 3 2 1 32 32 H 1.08998 * 109.47093 * 299.99548 * 3 2 1 33 33 H 1.08002 * 128.04093 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 38 38 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 39 39 H 1.09001 * 109.47499 * 59.99896 * 13 12 11 40 40 H 1.09003 * 109.47356 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47241 * 299.99653 * 13 12 11 42 42 H 1.08998 * 109.47140 * 289.99501 * 14 12 11 43 43 H 1.08995 * 109.47447 * 50.00165 * 14 12 11 44 44 H 0.97000 * 120.00257 * 0.02562 * 17 15 14 45 45 H 0.96997 * 119.99676 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3189 1.1278 -1.0844 6 6 5.6263 1.0195 -0.5339 7 6 6.9031 0.9192 -1.2821 8 8 6.8968 0.9196 -2.4970 9 7 8.0702 0.8276 -0.6142 10 6 9.3307 0.7226 -1.3532 11 6 10.4952 0.6319 -0.3650 12 7 11.7592 0.5260 -1.1060 13 6 12.0337 1.7579 -1.8576 14 6 12.8723 0.2002 -0.2045 15 6 14.0943 -0.1407 -1.0178 16 8 14.0431 -0.1145 -2.2294 17 7 15.2443 -0.4739 -0.3990 18 6 16.3558 -0.7846 -1.1389 19 1 16.3101 -0.7620 -2.2177 20 6 17.5413 -1.1285 -0.5009 21 7 17.5969 -1.1565 0.8117 22 14 19.0560 -1.5511 -1.5092 23 1 19.8413 -0.3168 -1.7639 24 1 19.8923 -2.5245 -0.7619 25 1 18.6386 -2.1481 -2.8033 26 7 5.4752 1.0318 0.7672 27 8 4.3099 1.1239 1.0759 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.0357 1.1549 -2.1263 34 1 8.0750 0.8269 0.3558 35 1 9.3131 -0.1716 -1.9765 36 1 9.4566 1.6027 -1.9840 37 1 10.5130 1.5259 0.2585 38 1 10.3692 -0.2483 0.2653 39 1 12.1034 2.5976 -1.1660 40 1 12.9753 1.6526 -2.3966 41 1 11.2264 1.9380 -2.5675 42 1 13.0874 1.0585 0.4320 43 1 12.5993 -0.6531 0.4163 44 1 15.2853 -0.4945 0.5699 45 1 18.4245 -1.3962 1.2570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663291759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:18 Heat of formation + Delta-G solvation = -63.699944 kcal Electronic energy + Delta-G solvation = -27797.530472 eV Core-core repulsion = 23432.432538 eV Total energy + Delta-G solvation = -4365.097933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.28087 -40.94411 -40.34292 -38.91483 -38.24664 -36.11330 -35.66694 -35.20094 -33.79037 -33.27428 -30.85446 -29.15273 -28.73203 -27.21034 -26.56600 -26.21335 -24.75343 -23.77144 -22.42133 -21.32830 -20.95073 -19.85409 -19.09387 -19.04946 -18.12543 -17.68602 -17.43180 -17.22927 -16.97005 -16.72551 -16.57636 -16.33745 -16.18171 -16.02701 -15.58859 -15.34189 -15.05377 -14.85290 -14.60545 -14.44883 -13.84491 -13.78280 -13.45724 -13.22824 -13.05006 -13.01449 -12.66962 -12.62410 -12.56660 -12.40233 -12.39360 -12.22167 -12.11020 -11.68273 -11.67108 -11.45499 -10.77385 -10.71027 -10.36235 -10.29171 -9.99093 -9.27629 -8.45919 -5.94249 -0.13068 0.42917 1.38105 1.41966 1.54044 1.57742 1.78271 1.90733 2.06495 2.29398 2.65014 2.86776 3.00829 3.21193 3.40460 3.47214 3.74703 3.77930 3.97437 4.00226 4.07479 4.23384 4.33586 4.40138 4.42148 4.50046 4.51844 4.58186 4.60745 4.61922 4.66686 4.75978 4.77058 4.86264 4.96650 5.09066 5.19310 5.42020 5.82560 6.03230 6.09991 6.11036 6.15912 6.61942 6.76363 6.88031 7.14305 7.57725 8.13994 8.71466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.001406 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.980603 B =19906.075678 C =20190.534235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.142 3.858 4 C -0.024 4.024 5 C -0.165 4.165 6 C -0.046 4.046 7 C 0.598 3.402 8 O -0.554 6.554 9 N -0.700 5.700 10 C 0.129 3.871 11 C 0.052 3.948 12 N -0.537 5.537 13 C 0.023 3.977 14 C 0.060 3.940 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.274 1.274 26 N -0.333 5.333 27 O 0.136 5.864 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.196 0.804 34 H 0.417 0.583 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.095 7.661 5.463 36.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.065 3.935 4 C -0.087 4.087 5 C -0.187 4.187 6 C -0.204 4.204 7 C 0.382 3.618 8 O -0.430 6.430 9 N -0.352 5.352 10 C 0.005 3.995 11 C -0.076 4.076 12 N -0.262 5.262 13 C -0.125 4.125 14 C -0.071 4.071 15 C 0.227 3.773 16 O -0.501 6.501 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 N -0.031 5.031 27 O 0.056 5.944 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.213 0.787 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.942 7.006 4.563 34.957 hybrid contribution 0.781 0.464 0.203 0.931 sum -33.161 7.470 4.766 34.324 Atomic orbital electron populations 1.23006 0.77861 1.04184 1.01904 1.87924 1.22555 1.27310 1.95906 1.20992 0.80515 0.86123 1.05854 1.24506 0.96378 1.03353 0.84483 1.22741 0.88996 1.04272 1.02734 1.23422 0.96882 1.09475 0.90574 1.17016 0.82198 0.76522 0.86041 1.90813 1.86990 1.51332 1.13901 1.45652 1.05285 1.72820 1.11424 1.21269 0.81050 1.02642 0.94537 1.22233 0.87440 1.03162 0.94806 1.61330 1.01562 1.36336 1.26964 1.22495 1.02863 0.88973 0.98155 1.21740 0.89064 1.02760 0.93550 1.20791 0.85206 0.82556 0.88749 1.90475 1.85130 1.58441 1.16092 1.41912 1.09083 1.60721 1.09376 1.19655 0.89326 1.44978 0.92292 0.90400 1.25994 1.01461 0.96697 0.96946 1.69667 1.29393 1.48689 1.08384 0.84956 0.77310 0.78373 0.77871 1.19642 1.19543 1.19907 1.74180 0.98258 1.15399 1.15307 1.84759 1.11134 1.64607 1.33904 0.92029 0.92028 0.88925 0.87888 0.86504 0.78661 0.74608 0.91554 0.91214 0.92070 0.88459 0.94640 0.92350 0.90597 0.90900 0.86817 0.76974 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 11.01 113.37 1.25 1.33 16 2 O -0.42 -4.32 10.69 -148.98 -1.59 -5.91 16 3 C 0.14 0.78 6.50 71.24 0.46 1.24 16 4 C -0.02 -0.30 7.10 25.01 0.18 -0.13 16 5 C -0.16 -2.67 10.92 22.60 0.25 -2.42 16 6 C -0.05 -0.96 7.19 42.96 0.31 -0.65 16 7 C 0.60 14.98 7.85 86.93 0.68 15.66 16 8 O -0.55 -17.52 16.95 -3.70 -0.06 -17.58 16 9 N -0.70 -14.80 5.55 -465.49 -2.59 -17.38 16 10 C 0.13 3.06 5.60 86.38 0.48 3.54 16 11 C 0.05 1.15 5.07 86.30 0.44 1.59 16 12 N -0.54 -17.04 4.50 -927.06 -4.17 -21.22 16 13 C 0.02 0.74 8.96 127.69 1.14 1.88 16 14 C 0.06 2.02 5.45 85.56 0.47 2.48 16 15 C 0.44 20.91 7.47 87.66 0.66 21.56 16 16 O -0.62 -34.18 13.91 -3.08 -0.04 -34.23 16 17 N -0.57 -29.39 5.29 -306.98 -1.62 -31.01 16 18 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 22 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 N -0.33 -6.53 11.84 -49.52 -0.59 -7.11 16 27 O 0.14 2.21 11.18 71.87 0.80 3.02 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.42 6.98 8.23 -92.71 -0.76 6.22 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.07 1.76 6.56 -2.38 -0.02 1.74 16 37 H 0.06 1.14 8.12 -2.38 -0.02 1.12 16 38 H 0.10 1.89 7.93 -2.39 -0.02 1.87 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 2.37 5.82 -2.39 -0.01 2.35 16 41 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 42 H 0.07 2.14 8.12 -2.39 -0.02 2.13 16 43 H 0.11 3.30 7.93 -2.39 -0.02 3.28 16 44 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -77.01 389.74 -0.40 -77.41 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.45 Total: 30.38 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 7.59 Total: 27.76 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -8.68 Total: -126.13 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.89 Total: -54.70 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.01 -0.40 -77.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663291759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.715 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds