Wall clock time and date at job start Tue Mar 31 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34598 * 126.49133 * 2 1 4 4 Cl 1.73601 * 125.43675 * 0.04734 * 3 2 1 5 5 N 1.31021 * 109.13064 * 180.25396 * 3 2 1 6 6 C 1.33304 * 109.70151 * 359.76024 * 5 3 2 7 7 C 1.36673 * 107.83286 * 359.97438 * 6 5 3 8 8 C 1.46660 * 126.84480 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00063 * 184.84382 * 8 7 6 10 10 N 1.34780 * 120.00027 * 4.83867 * 8 7 6 11 11 C 1.46494 * 120.00055 * 174.48302 * 10 8 7 12 12 H 1.09005 * 109.47318 * 325.00532 * 11 10 8 13 13 C 1.53005 * 109.46959 * 85.00446 * 11 10 8 14 14 C 1.52996 * 109.47020 * 60.00078 * 13 11 10 15 15 C 1.52994 * 109.47502 * 60.00142 * 14 13 11 16 16 C 1.53005 * 109.46867 * 299.99952 * 15 14 13 17 17 C 1.52994 * 109.47193 * 205.00078 * 11 10 8 18 18 H 1.09002 * 109.47407 * 180.02562 * 17 11 10 19 19 C 1.53005 * 109.46867 * 60.00312 * 17 11 10 20 20 N 1.46502 * 109.46886 * 174.99934 * 19 17 11 21 21 C 1.36936 * 119.99798 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00513 * 359.97438 * 21 20 19 23 23 C 1.38819 * 120.00246 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00081 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47406 * 89.99713 * 25 23 21 27 27 H 1.48503 * 109.46643 * 209.99707 * 25 23 21 28 28 H 1.48498 * 109.47064 * 329.99450 * 25 23 21 29 29 H 1.08999 * 109.47879 * 269.95350 * 1 2 3 30 30 H 1.09002 * 109.46872 * 29.95871 * 1 2 3 31 31 H 1.09007 * 109.47359 * 149.94914 * 1 2 3 32 32 H 1.08007 * 126.08606 * 180.02562 * 6 5 3 33 33 H 0.96998 * 119.99528 * 354.48644 * 10 8 7 34 34 H 1.09000 * 109.47256 * 299.99748 * 13 11 10 35 35 H 1.09002 * 109.46975 * 179.97438 * 13 11 10 36 36 H 1.08999 * 109.47071 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.46961 * 299.99659 * 14 13 11 38 38 H 1.09002 * 109.47407 * 59.99790 * 15 14 13 39 39 H 1.09005 * 109.47360 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.46969 * 299.99545 * 16 15 14 41 41 H 1.09000 * 109.47256 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.47172 * 294.99794 * 19 17 11 43 43 H 1.08998 * 109.47397 * 55.00104 * 19 17 11 44 44 H 0.97001 * 120.00858 * 359.97438 * 20 19 17 45 45 H 0.96997 * 119.99592 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0821 0.0000 4 17 1.7269 2.7325 0.0012 5 7 3.5160 0.6912 -0.0055 6 6 3.5704 -0.6408 -0.0039 7 6 2.2876 -1.1121 0.0035 8 6 1.8669 -2.5171 0.0071 9 8 0.6859 -2.7988 -0.0753 10 7 2.7882 -3.4962 0.1015 11 6 2.3631 -4.8925 0.2269 12 1 1.4489 -4.9422 0.8185 13 6 2.1024 -5.4731 -1.1645 14 6 3.3856 -5.4034 -1.9948 15 6 4.4854 -6.2112 -1.3029 16 6 4.7460 -5.6305 0.0885 17 6 3.4628 -5.7003 0.9188 18 1 3.1467 -6.7393 1.0117 19 6 3.7235 -5.1196 2.3101 20 7 4.6897 -5.9631 3.0181 21 6 5.0786 -5.6389 4.2904 22 1 4.6734 -4.7611 4.7718 23 6 5.9945 -6.4378 4.9612 24 7 6.4887 -7.5073 4.3743 25 14 6.5255 -5.9950 6.6965 26 1 5.6167 -6.6464 7.6737 27 1 7.9157 -6.4651 6.9237 28 1 6.4664 -4.5216 6.8714 29 1 -0.3635 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8896 -0.5146 32 1 4.4685 -1.2407 -0.0071 33 1 3.7328 -3.2763 0.0864 34 1 1.3189 -4.8977 -1.6574 35 1 1.7865 -6.5122 -1.0712 36 1 3.1998 -5.8166 -2.9861 37 1 3.7019 -4.3644 -2.0881 38 1 4.1691 -7.2501 -1.2096 39 1 5.3997 -6.1611 -1.8942 40 1 5.0624 -4.5916 -0.0048 41 1 5.5298 -6.2057 0.5813 42 1 4.1243 -4.1106 2.2135 43 1 2.7896 -5.0874 2.8712 44 1 5.0534 -6.7517 2.5860 45 1 7.1284 -8.0657 4.8432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716515601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:16 Heat of formation + Delta-G solvation = 18.673041 kcal Electronic energy + Delta-G solvation = -27880.020690 eV Core-core repulsion = 23959.203882 eV Total energy + Delta-G solvation = -3920.816808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.57631 -40.21563 -38.12044 -37.37047 -34.77521 -34.59097 -33.68004 -31.95527 -30.83825 -29.69433 -28.96463 -27.49827 -25.29366 -23.80937 -22.99144 -22.31661 -21.75515 -20.84496 -20.35828 -19.00475 -18.43345 -17.21919 -16.74129 -16.56342 -15.93160 -15.38545 -14.95570 -14.78762 -14.73712 -14.54866 -14.00790 -13.92522 -13.64130 -13.53014 -13.29979 -13.13875 -13.07617 -12.76995 -12.24441 -12.11354 -12.02495 -11.97402 -11.71465 -11.45152 -10.91143 -10.89643 -10.75637 -10.72535 -10.39325 -10.22518 -10.18994 -10.06053 -9.99901 -9.90472 -9.64951 -9.12778 -8.88124 -8.79149 -6.92876 -5.77736 -3.06019 0.84023 0.89425 2.30024 2.35909 3.08508 3.16858 3.43560 3.49223 3.50455 4.26378 4.35825 4.55823 4.63887 4.80181 4.84069 4.85255 4.88208 4.97713 5.18040 5.21022 5.29413 5.52166 5.56712 5.57392 5.61550 5.65574 5.70874 5.77689 6.00173 6.02755 6.10335 6.12368 6.21267 6.23775 6.31631 6.32996 6.43559 6.48903 6.65297 6.77097 6.83399 7.27845 7.41569 7.69911 8.02037 8.41436 9.52945 10.10057 10.44725 11.45076 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.003153 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.771063 B = 8876.940494 C =10749.198061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.413 5.413 3 C 0.258 3.742 4 Cl 0.040 6.960 5 N -0.466 5.466 6 C 0.051 3.949 7 C -0.065 4.065 8 C 0.597 3.403 9 O -0.546 6.546 10 N -0.697 5.697 11 C 0.159 3.841 12 H 0.089 0.911 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.088 0.912 19 C 0.159 3.841 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.404 0.596 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 13.334 -15.513 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.096 5.096 3 C -0.029 4.029 4 Cl 0.068 6.932 5 N -0.187 5.187 6 C -0.104 4.104 7 C -0.182 4.182 8 C 0.382 3.618 9 O -0.425 6.425 10 N -0.349 5.349 11 C 0.055 3.945 12 H 0.108 0.892 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.106 0.894 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.207 0.793 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.632 13.883 -15.392 23.768 hybrid contribution 0.134 -0.162 0.958 0.981 sum -11.498 13.720 -14.434 22.995 Atomic orbital electron populations 1.22434 0.74551 1.06064 1.05030 1.45022 1.08546 1.04409 1.51654 1.23216 0.86684 0.84457 1.08524 1.98429 1.88685 1.09001 1.97098 1.70074 1.16054 1.12695 1.19911 1.22732 0.95760 0.90033 1.01856 1.20860 0.90984 0.88697 1.17642 1.16583 0.85778 0.82707 0.76702 1.90780 1.16870 1.83823 1.51011 1.45765 1.09601 1.06408 1.73090 1.21040 0.98482 0.78651 0.96324 0.89250 1.21912 0.97903 1.01387 0.95495 1.21500 0.95276 1.00355 0.98280 1.21592 0.98158 0.99709 0.96407 1.21544 0.97859 1.01000 0.94476 1.21651 0.94461 1.00223 0.95806 0.89375 1.20651 0.93018 0.93872 0.89300 1.42351 1.50133 1.30008 1.14981 1.19213 1.19417 1.07485 0.90884 0.91317 1.24717 1.00018 0.97600 0.98543 1.69652 1.34415 1.16764 1.37380 0.86211 0.77708 0.77682 0.84734 1.21767 1.21762 1.20767 0.89496 0.89283 0.86856 0.79289 0.75899 0.91599 0.90848 0.92414 0.92272 0.91853 0.92162 0.92662 0.90098 0.96348 0.96510 0.78186 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.55 59.85 0.63 1.13 16 2 N -0.41 -4.61 3.18 -118.36 -0.38 -4.99 16 3 C 0.26 2.99 8.48 -90.34 -0.77 2.23 16 4 Cl 0.04 0.36 28.73 -51.86 -1.49 -1.13 16 5 N -0.47 -6.09 11.21 -11.48 -0.13 -6.22 16 6 C 0.05 0.59 11.37 -17.48 -0.20 0.39 16 7 C -0.06 -0.78 6.91 -82.10 -0.57 -1.35 16 8 C 0.60 7.63 7.74 -12.86 -0.10 7.53 16 9 O -0.55 -8.06 14.52 5.20 0.08 -7.98 16 10 N -0.70 -8.13 3.60 -55.12 -0.20 -8.33 16 11 C 0.16 1.98 2.19 -67.93 -0.15 1.83 16 12 H 0.09 1.24 7.66 -51.93 -0.40 0.84 16 13 C -0.13 -1.40 5.60 -26.73 -0.15 -1.55 16 14 C -0.12 -1.17 5.76 -26.74 -0.15 -1.32 16 15 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 16 C -0.11 -1.48 4.90 -26.73 -0.13 -1.61 16 17 C -0.10 -1.46 2.02 -90.62 -0.18 -1.65 16 18 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.16 3.00 5.42 -4.04 -0.02 2.98 16 20 N -0.73 -17.64 5.33 -59.90 -0.32 -17.96 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 25 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.52 7.78 -51.93 -0.40 0.12 16 31 H 0.11 1.04 6.42 -51.92 -0.33 0.71 16 32 H 0.19 1.70 7.46 -52.48 -0.39 1.31 16 33 H 0.40 4.26 5.61 -40.82 -0.23 4.03 16 34 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.68 6.51 -51.93 -0.34 0.34 16 41 H 0.08 1.31 7.18 -51.93 -0.37 0.94 16 42 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -32.29 374.77 -9.74 -42.03 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.46 Total: 8.68 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.19 Total: -0.06 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.30 Total: -64.47 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.08 Total: -7.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.49 Total: -1.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.29 -9.74 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716515601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.703 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds