Wall clock time and date at job start Wed Apr 1 2020 00:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48499 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47187 * 300.00135 * 3 2 1 6 6 H 1.48496 * 109.47062 * 60.00533 * 3 2 1 7 7 C 1.39949 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99910 * 163.61096 * 7 2 1 9 9 C 1.41397 * 119.99902 * 343.87676 * 7 2 1 10 10 C 1.40712 * 120.24263 * 144.90338 * 9 7 2 11 11 C 1.37624 * 119.74196 * 179.74370 * 10 9 7 12 12 C 1.38631 * 120.24803 * 0.53673 * 11 10 9 13 13 C 1.50704 * 119.74889 * 179.69599 * 12 11 10 14 14 N 1.46907 * 109.46757 * 270.02257 * 13 12 11 15 15 C 1.46893 * 110.99762 * 294.29865 * 14 13 12 16 16 C 1.53240 * 109.33733 * 172.74978 * 15 14 13 17 17 N 1.47079 * 108.52295 * 53.83322 * 16 15 14 18 18 C 1.34777 * 120.88776 * 128.79143 * 17 16 15 19 19 O 1.21691 * 120.00265 * 186.72348 * 18 17 16 20 20 C 1.46663 * 119.99553 * 6.72215 * 18 17 16 21 21 C 1.36543 * 125.98702 * 187.05061 * 20 18 17 22 22 C 1.40363 * 106.70803 * 179.91083 * 21 20 18 23 23 C 1.35135 * 107.11347 * 0.35853 * 22 21 20 24 24 O 1.33928 * 108.76836 * 359.77813 * 23 22 21 25 25 C 1.47083 * 118.23622 * 308.81290 * 17 16 15 26 26 C 1.46904 * 110.99437 * 170.00178 * 14 13 12 27 27 C 1.38635 * 120.50225 * 359.71988 * 12 11 10 28 28 C 1.37612 * 120.24979 * 0.02562 * 27 12 11 29 29 H 0.96995 * 120.00699 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.12814 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.87487 * 180.27160 * 11 10 9 32 32 H 1.09000 * 109.47315 * 30.01848 * 13 12 11 33 33 H 1.09001 * 109.47259 * 150.02368 * 13 12 11 34 34 H 1.08999 * 109.49710 * 292.70472 * 15 14 13 35 35 H 1.08991 * 109.49783 * 52.79267 * 15 14 13 36 36 H 1.08994 * 109.63314 * 294.12007 * 16 15 14 37 37 H 1.09005 * 109.62735 * 173.53642 * 16 15 14 38 38 H 1.07996 * 126.64413 * 0.03788 * 21 20 18 39 39 H 1.08000 * 126.44237 * 180.15065 * 22 21 20 40 40 H 1.07999 * 125.61541 * 179.78128 * 23 22 21 41 41 H 1.08998 * 109.62940 * 291.47522 * 25 17 16 42 42 H 1.08999 * 109.62916 * 170.89179 * 25 17 16 43 43 H 1.09001 * 109.49446 * 307.20770 * 26 14 13 44 44 H 1.08994 * 109.49261 * 67.29367 * 26 14 13 45 45 H 1.08005 * 119.87562 * 180.02562 * 27 12 11 46 46 H 1.07997 * 120.13006 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0551 -1.2308 -0.2645 9 6 1.3428 -2.4126 0.3390 10 6 1.6857 -3.6181 -0.3006 11 6 1.0352 -4.7816 0.0416 12 6 0.0380 -4.7669 1.0044 13 6 -0.6717 -6.0464 1.3656 14 7 -1.8468 -6.2156 0.5002 15 6 -2.8450 -5.1692 0.7576 16 6 -3.9665 -5.2712 -0.2817 17 7 -4.4897 -6.6458 -0.2712 18 6 -5.8118 -6.8821 -0.1585 19 8 -6.2172 -8.0221 -0.0284 20 6 -6.7618 -5.7652 -0.1925 21 6 -8.1041 -5.8462 0.0442 22 6 -8.6169 -4.5467 -0.0917 23 6 -7.5795 -3.7410 -0.4094 24 8 -6.4634 -4.4789 -0.4692 25 6 -3.5316 -7.7558 -0.3865 26 6 -2.4272 -7.5560 0.6570 27 6 -0.3118 -3.5840 1.6372 28 6 0.3288 -2.4096 1.3147 29 1 -0.4851 0.8399 0.0004 30 1 2.4589 -3.6309 -1.0545 31 1 1.2998 -5.7089 -0.4448 32 1 0.0056 -6.8891 1.2274 33 1 -0.9906 -6.0035 2.4070 34 1 -3.2615 -5.3013 1.7561 35 1 -2.3719 -4.1898 0.6871 36 1 -3.5720 -5.0371 -1.2704 37 1 -4.7650 -4.5737 -0.0284 38 1 -8.6626 -6.7371 0.2904 39 1 -9.6474 -4.2475 0.0309 40 1 -7.6404 -2.6773 -0.5858 41 1 -3.0952 -7.7606 -1.3853 42 1 -4.0424 -8.7010 -0.2025 43 1 -1.6509 -8.3076 0.5134 44 1 -2.8494 -7.6548 1.6569 45 1 -1.0900 -3.5843 2.3862 46 1 0.0545 -1.4891 1.8086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:25 Heat of formation + Delta-G solvation = 20.856459 kcal Electronic energy + Delta-G solvation = -29005.695504 eV Core-core repulsion = 25055.113475 eV Total energy + Delta-G solvation = -3950.582030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.93472 -40.02980 -38.38859 -37.22381 -34.87958 -33.54568 -33.21683 -31.54521 -30.44896 -29.98208 -29.37406 -27.91115 -25.75164 -23.95920 -23.64738 -22.57394 -21.96585 -21.13145 -20.76163 -19.91932 -19.65069 -17.77185 -17.28490 -16.91626 -16.57184 -16.05793 -15.35293 -15.12973 -14.99482 -14.84426 -14.69584 -14.19193 -14.01505 -13.74519 -13.54691 -13.35012 -13.20779 -12.93320 -12.88934 -12.49856 -12.23113 -11.97917 -11.70944 -11.54032 -11.30493 -11.21350 -11.13986 -11.07447 -10.89100 -10.52087 -10.34437 -10.33019 -10.22668 -9.57981 -9.44169 -9.17019 -9.04402 -8.72516 -8.04259 -7.49023 -7.25324 -6.75071 -4.37818 0.87601 2.14307 2.42903 2.68839 2.90933 3.00118 3.03663 3.07978 3.12712 3.13724 3.95084 4.18494 4.28460 4.65493 4.68046 4.73752 4.96361 5.01857 5.21373 5.24652 5.31538 5.40039 5.51030 5.54464 5.60798 5.67925 5.71720 5.76611 5.87258 5.90436 6.08184 6.11250 6.14278 6.20257 6.28348 6.34937 6.39474 6.64852 6.88299 7.08224 7.13574 7.17738 7.29978 7.31740 7.36020 7.58530 7.80136 7.87802 8.02910 8.03850 8.27335 8.60276 8.88039 8.93727 10.23706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002850 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.086114 B = 9823.652330 C =11695.160615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.475 4.475 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.218 4.218 11 C -0.071 4.071 12 C -0.201 4.201 13 C 0.120 3.880 14 N -0.531 5.531 15 C 0.042 3.958 16 C 0.103 3.897 17 N -0.601 5.601 18 C 0.601 3.399 19 O -0.531 6.531 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.227 4.227 23 C -0.010 4.010 24 O -0.154 6.154 25 C 0.118 3.882 26 C 0.040 3.960 27 C -0.098 4.098 28 C -0.155 4.155 29 H 0.278 0.722 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.029 0.971 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.210 0.790 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 -7.450 0.469 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.505 4.505 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.237 4.237 11 C -0.090 4.090 12 C -0.202 4.202 13 C -0.006 4.006 14 N -0.255 5.255 15 C -0.087 4.087 16 C -0.019 4.019 17 N -0.333 5.333 18 C 0.389 3.611 19 O -0.410 6.410 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.246 4.246 23 C -0.079 4.079 24 O -0.050 6.050 25 C -0.004 4.004 26 C -0.089 4.089 27 C -0.117 4.117 28 C -0.175 4.175 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.227 0.773 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.102 0.898 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.822 -7.779 -0.025 14.997 hybrid contribution -0.223 0.990 0.778 1.278 sum -13.045 -6.789 0.753 14.725 Atomic orbital electron populations 1.69805 1.07435 1.28966 1.36511 1.25806 0.94689 1.00908 0.92365 0.86343 0.81031 0.81346 0.78456 1.18516 1.20104 1.19841 1.19532 0.97588 0.91065 1.42327 0.90484 1.17603 0.90277 0.92092 0.88323 1.21098 1.05285 0.93684 1.03678 1.20364 0.95953 0.96478 0.96221 1.18852 1.02985 0.93158 1.05226 1.20754 0.90192 0.97033 0.92619 1.62075 1.06898 1.00986 1.55573 1.22522 0.92014 0.98353 0.95772 1.22342 0.96993 0.81387 1.01211 1.48137 1.05261 1.08942 1.70929 1.16696 0.81170 0.86158 0.77027 1.90844 1.78073 1.20611 1.51482 1.22071 0.95421 0.82941 1.12370 1.21950 0.92546 0.99024 1.00753 1.21846 1.00935 0.92941 1.08923 1.24601 0.83572 0.98070 1.01681 1.84301 1.34382 1.18012 1.68320 1.21806 0.88833 0.89727 1.00046 1.22471 0.96708 0.92583 0.97157 1.20501 0.98833 0.93120 0.99199 1.21097 1.00705 0.95933 0.99726 0.91113 0.88946 0.89361 0.91407 0.95703 0.95252 0.87469 0.89943 0.87896 0.82383 0.82681 0.77336 0.90228 0.88751 0.89523 0.94858 0.89849 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.37 11.60 55.55 0.64 -19.72 16 2 C 0.08 1.96 5.11 -17.34 -0.09 1.87 16 3 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.47 -12.36 9.01 -37.74 -0.34 -12.70 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.12 3.07 5.44 -106.82 -0.58 2.49 16 10 C -0.22 -5.17 9.80 -38.87 -0.38 -5.55 16 11 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 12 C -0.20 -4.04 4.91 -104.33 -0.51 -4.55 16 13 C 0.12 1.98 5.11 -4.97 -0.03 1.95 16 14 N -0.53 -8.15 4.62 -235.76 -1.09 -9.24 16 15 C 0.04 0.64 5.33 -3.70 -0.02 0.62 16 16 C 0.10 1.42 6.23 -3.60 -0.02 1.39 16 17 N -0.60 -8.28 3.01 -174.00 -0.52 -8.80 16 18 C 0.60 8.75 7.66 -12.86 -0.10 8.65 16 19 O -0.53 -8.79 16.33 5.20 0.08 -8.71 16 20 C -0.08 -0.98 6.77 -36.79 -0.25 -1.23 16 21 C -0.12 -1.35 10.63 -39.39 -0.42 -1.77 16 22 C -0.23 -2.00 10.87 -39.89 -0.43 -2.43 16 23 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 24 O -0.15 -1.80 7.28 5.00 0.04 -1.77 16 25 C 0.12 1.48 6.62 -3.60 -0.02 1.46 16 26 C 0.04 0.51 5.62 -3.69 -0.02 0.49 16 27 C -0.10 -2.11 7.82 -39.66 -0.31 -2.42 16 28 C -0.16 -3.82 8.66 -38.87 -0.34 -4.16 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 33 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.11 1.90 5.65 -51.93 -0.29 1.60 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.35 4.37 -52.53 -0.23 1.12 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.15 7.04 -51.93 -0.37 0.79 16 43 H 0.09 0.97 7.99 -51.93 -0.41 0.55 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.64 7.93 -52.48 -0.42 1.22 16 46 H 0.10 2.67 6.90 -52.49 -0.36 2.31 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -29.05 375.96 -10.36 -39.42 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.27 Total: 7.24 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.89 Total: -17.53 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.97 Total: -37.77 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.12 Total: -10.48 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.05 -10.36 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.274 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds