Wall clock time and date at job start Tue Mar 31 2020 23:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31265 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47071 * 240.00086 * 3 2 1 5 5 H 1.48502 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47378 * 119.99692 * 3 2 1 7 7 C 1.39226 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99537 * 191.54354 * 7 2 1 9 9 N 1.36576 * 120.00130 * 11.54541 * 7 2 1 10 10 C 1.34777 * 119.99835 * 196.39235 * 9 7 2 11 11 O 1.21745 * 120.00056 * 4.49614 * 10 9 7 12 12 C 1.46362 * 119.99723 * 184.49079 * 10 9 7 13 13 C 1.34960 * 119.99682 * 174.41378 * 12 10 9 14 14 C 1.47142 * 120.00002 * 179.72481 * 13 12 10 15 15 C 1.39959 * 120.02326 * 359.72707 * 14 13 12 16 16 C 1.37614 * 119.96448 * 179.74195 * 15 14 13 17 17 C 1.39711 * 120.03012 * 0.52898 * 16 15 14 18 18 C 1.47826 * 119.97155 * 179.70187 * 17 16 15 19 19 O 1.21558 * 119.99562 * 180.02562 * 18 17 16 20 20 N 1.34765 * 120.00062 * 0.02562 * 18 17 16 21 21 C 1.46496 * 120.00370 * 179.97438 * 20 18 17 22 22 C 1.52999 * 117.50474 * 223.62878 * 21 20 18 23 23 C 1.52997 * 117.50285 * 155.00128 * 21 20 18 24 24 C 1.39716 * 120.05702 * 359.71954 * 17 16 15 25 25 C 1.37603 * 120.02818 * 0.02562 * 24 17 16 26 26 C 1.46499 * 120.00082 * 16.39312 * 9 7 2 27 27 C 1.53002 * 117.49938 * 128.76787 * 26 9 7 28 28 C 1.52997 * 117.50185 * 60.10944 * 26 9 7 29 29 H 0.96994 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.00532 * 354.40907 * 12 10 9 31 31 H 1.07995 * 120.00248 * 359.97438 * 13 12 10 32 32 H 1.07999 * 120.02028 * 359.96808 * 15 14 13 33 33 H 1.07995 * 119.98159 * 180.23017 * 16 15 14 34 34 H 0.97001 * 120.00423 * 0.02562 * 20 18 17 35 35 H 1.09003 * 115.55054 * 9.33406 * 21 20 18 36 36 H 1.08996 * 117.49941 * 359.97438 * 22 21 20 37 37 H 1.08994 * 117.50471 * 145.02391 * 22 21 20 38 38 H 1.09003 * 117.50387 * 214.98655 * 23 21 20 39 39 H 1.09005 * 117.50028 * 359.97438 * 23 21 20 40 40 H 1.08010 * 119.98928 * 179.97438 * 24 17 16 41 41 H 1.08011 * 120.01291 * 179.97438 * 25 24 17 42 42 H 1.09004 * 115.54982 * 274.43442 * 26 9 7 43 43 H 1.08998 * 117.49601 * 0.02562 * 27 26 9 44 44 H 1.09003 * 117.49820 * 145.02072 * 27 26 9 45 45 H 1.08999 * 117.50310 * 214.98289 * 28 26 9 46 46 H 1.09001 * 117.49690 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1003 1.6964 -1.2125 5 1 1.2816 2.7464 -0.0006 6 1 3.1003 1.6965 1.2125 7 6 2.0087 -1.2057 0.0005 8 1 3.0724 -1.2151 0.1877 9 7 1.3466 -2.3767 -0.2357 10 6 1.9227 -3.5527 0.0829 11 8 2.9970 -3.5690 0.6554 12 6 1.2568 -4.8103 -0.2594 13 6 1.8830 -5.9861 -0.0432 14 6 1.2111 -7.2506 -0.3816 15 6 -0.0796 -7.2349 -0.9226 16 6 -0.7047 -8.4181 -1.2437 17 6 -0.0559 -9.6349 -1.0196 18 6 -0.7313 -10.9054 -1.3588 19 8 -0.1674 -11.9644 -1.1636 20 7 -1.9721 -10.8895 -1.8845 21 6 -2.6412 -12.1484 -2.2213 22 6 -3.3838 -12.2186 -3.5571 23 6 -4.1709 -12.1507 -2.2469 24 6 1.2305 -9.6521 -0.4748 25 6 1.8599 -8.4703 -0.1577 26 6 0.0101 -2.3543 -0.8353 27 6 -0.2306 -3.2420 -2.0580 28 6 -0.1317 -1.7233 -2.2218 29 1 -0.4849 0.8400 -0.0004 30 1 0.2643 -4.7974 -0.6850 31 1 2.8756 -5.9990 0.3821 32 1 -0.5833 -6.2946 -1.0914 33 1 -1.6992 -8.4061 -1.6646 34 1 -2.4219 -10.0444 -2.0407 35 1 -2.1424 -13.0534 -1.8743 36 1 -3.3749 -11.3280 -4.1853 37 1 -3.3736 -13.1698 -4.0893 38 1 -4.6786 -13.0572 -1.9171 39 1 -4.6796 -11.2155 -2.0127 40 1 1.7309 -10.5935 -0.3016 41 1 2.8543 -8.4839 0.2638 42 1 -0.8165 -2.2252 -0.1366 43 1 0.6054 -3.8429 -2.4160 44 1 -1.2156 -3.6965 -2.1639 45 1 -1.0517 -1.1793 -2.4355 46 1 0.7693 -1.3244 -2.6877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:07 Heat of formation + Delta-G solvation = 42.024957 kcal Electronic energy + Delta-G solvation = -27832.270996 eV Core-core repulsion = 23882.606902 eV Total energy + Delta-G solvation = -3949.664095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.41217 -39.13428 -38.56935 -37.27814 -36.17211 -34.01911 -33.33314 -32.83678 -31.26428 -31.00471 -29.56677 -25.94182 -24.51386 -22.82622 -22.79401 -22.67650 -21.82661 -21.56810 -21.04070 -20.22159 -18.27426 -18.13576 -17.19656 -16.99676 -16.36502 -15.30033 -15.25133 -15.17018 -15.12552 -15.02548 -14.64211 -14.31249 -13.99503 -13.84210 -13.54398 -13.28983 -13.01843 -12.96593 -12.73878 -12.47356 -12.03321 -11.90861 -11.75430 -11.66932 -11.24365 -11.21978 -10.96389 -10.90237 -10.81047 -10.54617 -10.47566 -10.16526 -10.03391 -9.97541 -9.49954 -9.12630 -9.09768 -8.98810 -8.47691 -8.04977 -7.90561 -6.48999 -3.92804 0.41355 1.33269 2.01068 2.73603 2.83812 3.13383 3.15372 3.19098 3.50740 3.87123 3.97636 4.32299 4.33270 4.43713 4.53138 4.54589 4.56350 4.61869 4.66520 4.83786 4.98375 5.11658 5.19302 5.25809 5.31802 5.39063 5.51463 5.53341 5.63321 5.67160 5.68235 5.76449 5.90103 6.00347 6.10570 6.12164 6.14934 6.23639 6.24985 6.36355 6.62772 6.79044 6.80858 6.86675 6.95911 7.11309 7.17169 7.38455 7.93900 7.94381 8.34547 9.04559 9.25608 9.88212 10.51996 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002082 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.769610 B =13446.912033 C =14580.314143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.036 3.964 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.400 5.400 10 C 0.454 3.546 11 O -0.597 6.597 12 C -0.135 4.135 13 C -0.113 4.113 14 C -0.004 4.004 15 C -0.128 4.128 16 C -0.080 4.080 17 C -0.156 4.156 18 C 0.568 3.432 19 O -0.540 6.540 20 N -0.702 5.702 21 C 0.080 3.920 22 C -0.194 4.194 23 C -0.190 4.190 24 C -0.054 4.054 25 C -0.123 4.123 26 C 0.133 3.867 27 C -0.229 4.229 28 C -0.145 4.145 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -16.707 -6.753 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.428 4.428 8 H 0.123 0.877 9 N -0.115 5.115 10 C 0.246 3.754 11 O -0.484 6.484 12 C -0.157 4.157 13 C -0.134 4.134 14 C -0.005 4.005 15 C -0.146 4.146 16 C -0.099 4.099 17 C -0.159 4.159 18 C 0.357 3.643 19 O -0.417 6.417 20 N -0.353 5.353 21 C -0.026 4.026 22 C -0.233 4.233 23 C -0.228 4.228 24 C -0.073 4.073 25 C -0.141 4.141 26 C 0.028 3.972 27 C -0.267 4.267 28 C -0.182 4.182 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.238 0.762 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.083 -17.226 -6.323 20.474 hybrid contribution -0.208 1.470 -0.244 1.505 sum -9.291 -15.755 -6.566 19.434 Atomic orbital electron populations 1.69846 1.06045 1.27977 1.45641 1.25367 0.95532 0.99851 0.96297 0.85954 0.79069 0.80202 0.79351 1.19745 1.20759 1.19589 1.19740 0.94271 0.82466 1.46300 0.87690 1.43148 1.13591 1.05340 1.49435 1.17807 0.87848 0.83575 0.86136 1.90649 1.23690 1.86911 1.47166 1.23692 1.00318 0.93527 0.98119 1.22074 1.00403 0.89865 1.01085 1.19387 0.93225 0.93525 0.94351 1.21380 0.94872 0.98322 1.00028 1.21095 0.99008 0.91681 0.98112 1.19771 0.96756 0.92168 1.07214 1.18344 0.80557 0.89178 0.76189 1.90750 1.65053 1.32272 1.53654 1.45302 1.16809 1.08433 1.64708 1.21599 0.91411 0.89459 1.00102 1.23439 1.04376 1.04035 0.91412 1.23392 0.93914 1.04086 1.01434 1.21122 0.92901 0.98769 0.94477 1.21340 1.00579 0.91074 1.01102 1.21235 0.87196 1.00260 0.88510 1.23714 1.01907 0.95185 1.05926 1.22784 1.02233 0.92386 1.00827 0.91784 0.85391 0.85024 0.84789 0.85984 0.76204 0.84385 0.88392 0.87924 0.87798 0.88355 0.84749 0.84866 0.86587 0.89260 0.89124 0.89450 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.95 10.08 55.51 0.56 -20.39 16 2 C 0.04 0.88 5.01 -17.43 -0.09 0.80 16 3 Si 0.93 19.70 29.57 -169.99 -5.03 14.68 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -7.98 9.25 -15.07 -0.14 -8.12 16 8 H 0.11 2.95 7.34 -52.48 -0.39 2.57 16 9 N -0.40 -9.83 2.92 -109.33 -0.32 -10.15 16 10 C 0.45 10.97 7.47 -12.99 -0.10 10.87 16 11 O -0.60 -16.52 15.91 5.15 0.08 -16.44 16 12 C -0.14 -2.52 7.54 -37.48 -0.28 -2.81 16 13 C -0.11 -1.89 9.45 -37.13 -0.35 -2.24 16 14 C 0.00 -0.06 5.87 -105.00 -0.62 -0.68 16 15 C -0.13 -1.54 9.40 -39.17 -0.37 -1.91 16 16 C -0.08 -0.83 9.52 -39.26 -0.37 -1.20 16 17 C -0.16 -1.83 5.88 -104.87 -0.62 -2.44 16 18 C 0.57 6.83 7.77 -12.34 -0.10 6.73 16 19 O -0.54 -8.17 15.90 5.31 0.08 -8.09 16 20 N -0.70 -6.18 5.51 -54.76 -0.30 -6.48 16 21 C 0.08 0.64 6.43 -67.93 -0.44 0.20 16 22 C -0.19 -1.16 10.46 -26.73 -0.28 -1.44 16 23 C -0.19 -1.07 10.46 -26.73 -0.28 -1.35 16 24 C -0.05 -0.66 9.57 -39.26 -0.38 -1.03 16 25 C -0.12 -1.53 9.77 -39.17 -0.38 -1.92 16 26 C 0.13 2.78 3.61 -67.93 -0.25 2.53 16 27 C -0.23 -3.76 7.79 -26.69 -0.21 -3.97 16 28 C -0.14 -2.74 8.89 -26.70 -0.24 -2.98 16 29 H 0.27 6.31 8.30 -40.82 -0.34 5.97 16 30 H 0.13 2.05 3.25 -52.49 -0.17 1.88 16 31 H 0.13 2.34 7.53 -52.49 -0.40 1.94 16 32 H 0.13 1.48 6.15 -52.49 -0.32 1.16 16 33 H 0.12 0.85 6.38 -52.49 -0.33 0.52 16 34 H 0.40 2.58 6.84 -40.82 -0.28 2.30 16 35 H 0.14 1.27 7.40 -51.93 -0.38 0.88 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 1.56 7.64 -52.48 -0.40 1.16 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.12 2.53 7.68 -51.93 -0.40 2.13 16 43 H 0.09 1.49 7.04 -51.93 -0.37 1.12 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -31.39 385.95 -10.53 -41.93 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.95 Total: 10.08 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -5.47 Total: -10.95 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.06 Total: -37.01 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.17 Total: -24.53 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.39 -10.53 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.954 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds