Wall clock time and date at job start Tue Mar 31 2020 23:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48503 * 109.47082 * 269.99687 * 3 2 1 5 5 H 1.48492 * 109.47090 * 30.00220 * 3 2 1 6 6 H 1.48499 * 109.46812 * 150.00276 * 3 2 1 7 7 C 1.37876 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00291 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99936 * 89.99796 * 10 9 7 12 12 C 1.50703 * 109.46877 * 90.00092 * 11 10 9 13 13 C 1.38669 * 120.41762 * 269.72204 * 12 11 10 14 14 C 1.38631 * 118.41927 * 179.78495 * 13 12 11 15 15 C 1.38237 * 119.15923 * 0.51175 * 14 13 12 16 16 N 1.31857 * 120.76049 * 359.72419 * 15 14 13 17 17 C 1.31878 * 121.72700 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00036 * 270.27831 * 10 9 7 19 19 O 1.21281 * 120.00220 * 179.72597 * 18 10 9 20 20 C 1.50706 * 120.00080 * 359.72107 * 18 10 9 21 21 C 1.52992 * 109.47274 * 180.02562 * 20 18 10 22 22 H 1.09000 * 109.47346 * 54.99769 * 21 20 18 23 23 O 1.42907 * 109.46969 * 294.99600 * 21 20 18 24 24 C 1.50696 * 109.47126 * 175.00019 * 21 20 18 25 25 C 1.38239 * 120.00054 * 84.72665 * 24 21 20 26 26 C 1.38238 * 120.00319 * 179.78830 * 25 24 21 27 27 C 1.38234 * 119.99458 * 0.43867 * 26 25 24 28 28 C 1.38234 * 120.00363 * 359.81664 * 27 26 25 29 29 C 1.38229 * 120.00365 * 264.99647 * 24 21 20 30 30 H 0.96998 * 119.99775 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47398 * 60.00031 * 9 7 2 32 32 H 1.09005 * 109.46700 * 299.99953 * 9 7 2 33 33 H 1.09000 * 109.46803 * 209.99571 * 11 10 9 34 34 H 1.09000 * 109.47214 * 330.00364 * 11 10 9 35 35 H 1.07992 * 120.79277 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.42209 * 180.21604 * 14 13 12 37 37 H 1.07990 * 119.61497 * 179.75168 * 15 14 13 38 38 H 1.08000 * 119.61656 * 179.97438 * 17 16 15 39 39 H 1.09004 * 109.46762 * 300.00389 * 20 18 10 40 40 H 1.08998 * 109.46924 * 59.99727 * 20 18 10 41 41 H 0.96693 * 114.00054 * 300.00728 * 23 21 20 42 42 H 1.08000 * 119.99799 * 359.97438 * 25 24 21 43 43 H 1.07993 * 120.00367 * 180.26889 * 26 25 24 44 44 H 1.07997 * 119.99884 * 179.83266 * 27 26 25 45 45 H 1.08005 * 120.00268 * 180.02562 * 28 27 26 46 46 H 1.08004 * 120.00029 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.2436 -3.2662 -1.2687 12 6 5.6667 -3.0294 -1.7043 13 6 5.9833 -1.9461 -2.5100 14 6 7.3064 -1.7653 -2.8824 15 6 8.2576 -2.6705 -2.4501 16 7 7.9191 -3.6923 -1.6885 17 6 6.6715 -3.8926 -1.3110 18 6 4.2197 -3.2122 1.1673 19 8 4.6192 -4.3573 1.1674 20 6 3.9690 -2.5015 2.4724 21 6 4.2949 -3.4407 3.6353 22 1 5.3153 -3.8090 3.5300 23 8 3.3867 -4.5441 3.6253 24 6 4.1625 -2.6931 4.9370 25 6 2.9262 -2.5763 5.5444 26 6 2.8054 -1.8942 6.7407 27 6 3.9195 -1.3212 7.3250 28 6 5.1548 -1.4334 6.7150 29 6 5.2763 -2.1193 5.5210 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6797 0.8894 32 1 3.8745 -0.6808 -0.8906 33 1 4.0767 -4.3354 -1.1379 34 1 3.5625 -2.8822 -2.0281 35 1 5.2182 -1.2575 -2.8363 36 1 7.5897 -0.9305 -3.5063 37 1 9.2897 -2.5389 -2.7392 38 1 6.4324 -4.7412 -0.6872 39 1 4.6028 -1.6167 2.5318 40 1 2.9222 -2.2030 2.5283 41 1 2.4581 -4.2900 3.7152 42 1 2.0551 -3.0205 5.0858 43 1 1.8403 -1.8067 7.2174 44 1 3.8247 -0.7860 8.2583 45 1 6.0253 -0.9861 7.1718 46 1 6.2415 -2.2071 5.0445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091232324.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:17 Heat of formation + Delta-G solvation = -24.244158 kcal Electronic energy + Delta-G solvation = -29327.823338 eV Core-core repulsion = 25375.285599 eV Total energy + Delta-G solvation = -3952.537739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.21860 -39.72786 -38.81006 -36.58562 -35.26694 -33.11835 -32.26226 -31.96619 -31.46459 -30.83436 -29.50455 -28.16899 -26.18243 -24.09942 -23.43445 -22.57014 -22.49810 -21.91073 -20.83949 -18.63284 -17.52049 -17.24363 -16.87060 -16.48462 -16.06023 -15.86483 -15.76894 -15.27811 -15.13137 -14.79965 -14.51058 -14.21207 -13.72399 -13.61134 -13.49307 -13.33746 -13.09160 -12.90937 -12.89312 -12.68655 -12.42322 -12.09969 -11.79383 -11.67559 -11.56532 -11.31583 -11.09953 -11.02143 -10.86173 -10.69232 -10.37857 -9.91612 -9.79963 -9.65727 -9.35118 -9.25073 -8.91743 -8.86107 -8.80169 -8.63894 -7.87817 -6.31378 -4.33707 1.21806 1.33077 1.40411 1.42215 3.08631 3.16762 3.19183 3.28878 3.61693 3.80274 4.11218 4.17119 4.59109 4.69326 4.70088 4.87664 4.93347 4.97511 4.98988 5.08283 5.09262 5.13990 5.20557 5.22331 5.34970 5.45008 5.52295 5.59004 5.67920 5.83145 5.91253 5.96550 6.01207 6.03461 6.12014 6.22237 6.24816 6.35100 6.44604 6.49294 6.49909 6.56465 6.65283 6.86057 6.98488 7.20260 7.33712 7.87960 8.01700 8.10959 8.30345 8.73268 8.86304 9.27961 10.80947 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007879 B = 0.004348 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3552.860454 B = 6437.694330 C = 8502.707655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.210 3.790 10 N -0.589 5.589 11 C 0.161 3.839 12 C -0.145 4.145 13 C -0.063 4.063 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.524 3.476 19 O -0.550 6.550 20 C -0.166 4.166 21 C 0.167 3.833 22 H 0.109 0.891 23 O -0.540 6.540 24 C -0.110 4.110 25 C -0.107 4.107 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.112 4.112 30 H 0.267 0.733 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.369 0.631 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -0.539 5.239 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.319 5.319 11 C 0.037 3.963 12 C -0.148 4.148 13 C -0.090 4.090 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.199 5.199 17 C -0.040 4.040 18 C 0.312 3.688 19 O -0.429 6.429 20 C -0.206 4.206 21 C 0.107 3.893 22 H 0.127 0.873 23 O -0.345 6.345 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.130 4.130 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.216 0.784 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.317 -1.928 5.441 12.704 hybrid contribution -0.947 2.401 -0.319 2.600 sum 10.370 0.473 5.122 11.576 Atomic orbital electron populations 1.69884 1.06183 1.27266 1.49178 1.24861 0.94693 0.98792 0.94195 0.86979 0.80493 0.84160 0.78939 1.19886 1.20781 1.18917 1.21366 0.88942 0.95032 1.52743 0.90214 1.19810 0.95860 0.78015 0.97484 1.47911 1.64201 1.15750 1.04066 1.20141 0.90239 0.99086 0.86871 1.21473 0.98700 0.96315 0.98323 1.21626 0.96641 0.96000 0.94721 1.22104 0.94085 1.01192 1.02535 1.22713 0.99665 0.90476 0.93982 1.67722 1.20386 1.20418 1.11395 1.22886 0.87258 0.98308 0.95508 1.20257 0.76904 0.86283 0.85357 1.90635 1.47176 1.17582 1.87546 1.22400 1.05963 0.99548 0.92665 1.20527 0.95251 0.85449 0.88109 0.87326 1.86698 1.19291 1.32463 1.96034 1.20688 0.93942 0.98800 0.97581 1.20953 0.96991 0.98893 0.95708 1.21124 0.98681 0.97905 0.95777 1.21136 0.92980 1.00132 1.00070 1.21107 0.97572 0.99407 0.95784 1.20994 0.98234 0.97981 0.95770 0.92283 0.94870 0.95529 0.89309 0.89095 0.84696 0.85111 0.83266 0.82255 0.88757 0.87042 0.78389 0.85878 0.86005 0.86295 0.86178 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 13.96 55.43 0.77 -23.96 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 19.05 27.47 -169.99 -4.67 14.38 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 7 C -0.54 -13.42 9.82 -34.44 -0.34 -13.75 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 9 C 0.21 4.34 4.03 -5.19 -0.02 4.32 16 10 N -0.59 -11.22 2.44 -176.43 -0.43 -11.65 16 11 C 0.16 2.73 5.56 -5.19 -0.03 2.70 16 12 C -0.14 -2.27 5.48 -104.48 -0.57 -2.84 16 13 C -0.06 -0.89 9.86 -39.28 -0.39 -1.28 16 14 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 15 C 0.09 1.15 11.18 -17.54 -0.20 0.96 16 16 N -0.49 -7.70 10.36 -13.25 -0.14 -7.83 16 17 C 0.12 1.90 10.86 -17.55 -0.19 1.70 16 18 C 0.52 9.99 7.55 -10.98 -0.08 9.91 16 19 O -0.55 -11.37 14.58 -8.87 -0.13 -11.50 16 20 C -0.17 -2.77 3.92 -27.88 -0.11 -2.88 16 21 C 0.17 2.54 2.76 -27.89 -0.08 2.46 16 22 H 0.11 1.72 7.86 -51.93 -0.41 1.31 16 23 O -0.54 -8.79 12.37 -49.65 -0.61 -9.41 16 24 C -0.11 -1.50 5.00 -104.63 -0.52 -2.03 16 25 C -0.11 -1.39 9.33 -39.58 -0.37 -1.76 16 26 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 27 C -0.13 -1.38 10.05 -39.58 -0.40 -1.77 16 28 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 29 C -0.11 -1.40 9.68 -39.59 -0.38 -1.78 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.68 5.51 -51.93 -0.29 0.40 16 32 H 0.03 0.54 7.50 -51.93 -0.39 0.15 16 33 H 0.09 1.52 7.36 -51.93 -0.38 1.14 16 34 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 35 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.16 2.64 7.64 -52.49 -0.40 2.24 16 39 H 0.09 1.50 7.41 -51.93 -0.38 1.11 16 40 H 0.11 1.99 7.98 -51.93 -0.41 1.57 16 41 H 0.37 4.95 7.40 45.56 0.34 5.28 16 42 H 0.12 1.44 6.62 -52.49 -0.35 1.09 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 46 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -30.97 388.77 -9.96 -40.93 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.64 Total: 13.43 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.97 Total: -10.24 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.21 Total: -43.44 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.74 Total: -20.91 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.67 Total: 14.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.97 -9.96 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091232324.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.682 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds