Wall clock time and date at job start Tue Mar 31 2020 23:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00120 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37875 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 C 1.52996 * 109.47059 * 179.72339 * 16 15 13 18 18 H 1.09008 * 109.47304 * 304.99667 * 17 16 15 19 19 O 1.42902 * 109.47328 * 64.99617 * 17 16 15 20 20 C 1.53003 * 109.47530 * 184.99929 * 17 16 15 21 21 O 1.42894 * 109.47529 * 174.99893 * 20 17 16 22 22 C 1.35948 * 117.00316 * 180.02562 * 21 20 17 23 23 C 1.38715 * 120.02608 * 359.72036 * 22 21 20 24 24 C 1.38149 * 119.96488 * 179.79311 * 23 22 21 25 25 C 1.38454 * 120.03420 * 0.48511 * 24 23 22 26 26 F 1.35094 * 119.97154 * 179.72421 * 25 24 23 27 27 C 1.38453 * 120.05622 * 359.74594 * 25 24 23 28 28 C 1.38150 * 120.03298 * 0.02562 * 27 25 24 29 29 H 0.97010 * 119.99934 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 31 31 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 32 32 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 33 33 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 34 34 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 35 35 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 36 36 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96696 * 113.99765 * 60.00422 * 19 17 16 41 41 H 1.08998 * 109.46886 * 295.00118 * 20 17 16 42 42 H 1.09002 * 109.46923 * 54.99368 * 20 17 16 43 43 H 1.07997 * 120.01107 * 0.02562 * 23 22 21 44 44 H 1.08001 * 119.98271 * 180.21583 * 24 23 22 45 45 H 1.08008 * 119.98288 * 179.97438 * 27 25 24 46 46 H 1.08004 * 120.01490 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 7 2.4321 -6.1006 -0.0037 13 6 1.9828 -7.3713 -0.0047 14 8 0.7873 -7.5935 -0.0058 15 7 2.8586 -8.3958 -0.0045 16 6 2.3702 -9.7769 -0.0118 17 6 3.5601 -10.7386 -0.0170 18 1 4.2132 -10.5041 -0.8576 19 8 4.2886 -10.6016 1.2048 20 6 3.0536 -12.1762 -0.1503 21 8 4.1666 -13.0641 -0.2722 22 6 3.8884 -14.3885 -0.4007 23 6 2.5714 -14.8241 -0.4035 24 6 2.2900 -16.1699 -0.5385 25 6 3.3219 -17.0847 -0.6610 26 9 3.0454 -18.4010 -0.7874 27 6 4.6370 -16.6518 -0.6536 28 6 4.9212 -15.3061 -0.5234 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5562 -0.8919 31 1 0.6240 -2.5574 0.8880 32 1 2.8712 -3.6048 0.8890 33 1 2.8724 -3.6040 -0.8910 34 1 0.8543 -5.0441 -0.8939 35 1 0.8525 -5.0455 0.8861 36 1 3.3857 -5.9235 -0.0032 37 1 3.8122 -8.2185 -0.0040 38 1 1.7647 -9.9529 0.8773 39 1 1.7646 -9.9435 -0.9026 40 1 3.7686 -10.7955 1.9966 41 1 2.4732 -12.4403 0.7337 42 1 2.4240 -12.2589 -1.0362 43 1 1.7664 -14.1111 -0.3039 44 1 1.2646 -16.5089 -0.5442 45 1 5.4411 -17.3666 -0.7488 46 1 5.9472 -14.9687 -0.5173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171448093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:31 Heat of formation + Delta-G solvation = -152.958362 kcal Electronic energy + Delta-G solvation = -27174.496132 eV Core-core repulsion = 22785.607702 eV Total energy + Delta-G solvation = -4388.888431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.29746 -40.79171 -39.95441 -38.51992 -37.23617 -35.52353 -34.39220 -33.30820 -31.98188 -31.50209 -30.86715 -29.63427 -27.16107 -25.90815 -23.84344 -23.07938 -22.61805 -22.22047 -20.87722 -20.38870 -18.98544 -18.22101 -18.00289 -17.58383 -17.22728 -16.71632 -16.35188 -16.08721 -15.80248 -15.72334 -15.30864 -15.10416 -14.79652 -14.52430 -14.32023 -14.17155 -14.12969 -14.01982 -13.69031 -13.51613 -13.01809 -12.93178 -12.69725 -12.28989 -11.82135 -11.76227 -11.70701 -11.46751 -11.30825 -10.91010 -10.77622 -10.73069 -10.59936 -10.19192 -9.87013 -9.78528 -9.45773 -9.33667 -9.13295 -8.67385 -8.65628 -8.37708 -6.02408 -4.05511 0.56346 0.64673 2.24668 2.85925 2.99140 3.28497 3.30411 3.36911 3.39684 3.76191 3.76794 3.98404 4.13720 4.18649 4.21482 4.31430 4.40632 4.45535 4.51805 4.63356 4.74001 4.79950 5.01854 5.22402 5.28016 5.33531 5.42111 5.53750 5.57591 5.62610 5.68366 5.79530 6.10568 6.16054 6.27459 6.49489 6.60779 6.73382 6.76287 6.99956 7.01433 7.05411 7.63086 7.75718 7.96405 8.08019 8.37365 8.67412 9.01182 9.58777 11.08880 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.047519 B = 0.001215 C = 0.001194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.100696 B =23036.410062 C =23452.920556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.701 3.299 14 O -0.595 6.595 15 N -0.746 5.746 16 C 0.113 3.887 17 C 0.100 3.900 18 H 0.118 0.882 19 O -0.547 6.547 20 C 0.028 3.972 21 O -0.299 6.299 22 C 0.123 3.877 23 C -0.182 4.182 24 C -0.111 4.111 25 C 0.057 3.943 26 F -0.141 7.141 27 C -0.113 4.113 28 C -0.123 4.123 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.379 0.621 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -34.995 -0.422 36.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.400 3.600 14 O -0.473 6.473 15 N -0.404 5.404 16 C -0.013 4.013 17 C 0.040 3.960 18 H 0.136 0.864 19 O -0.352 6.352 20 C -0.048 4.048 21 O -0.212 6.212 22 C 0.077 3.923 23 C -0.201 4.201 24 C -0.130 4.130 25 C 0.038 3.962 26 F -0.120 7.120 27 C -0.131 4.131 28 C -0.141 4.141 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.840 -34.835 -0.820 35.949 hybrid contribution 0.455 0.669 0.285 0.858 sum 9.296 -34.166 -0.535 35.412 Atomic orbital electron populations 1.69967 1.06066 1.26680 1.50558 1.25021 0.94844 0.99281 0.95255 0.86586 0.79812 0.83445 0.78097 1.20664 1.21200 1.19890 1.21206 0.93001 0.90952 1.50960 0.92647 1.19026 0.93853 0.90810 0.97692 1.21897 0.99804 0.93294 1.00884 1.21530 0.91276 0.84131 1.01899 1.45379 1.10582 1.04363 1.79045 1.15981 0.85162 0.80819 0.77989 1.90925 1.14130 1.84175 1.58068 1.44870 1.09386 1.04465 1.81657 1.21617 0.95315 0.80770 1.03560 1.22136 0.94014 0.90236 0.89587 0.86408 1.86663 1.41328 1.92036 1.15214 1.23517 0.88674 0.89801 1.02821 1.86147 1.34083 1.13576 1.87433 1.19051 0.93190 0.83683 0.96389 1.21167 0.95776 0.96398 1.06776 1.20974 0.99358 0.92420 1.00285 1.17603 0.93829 0.78121 1.06661 1.91501 1.94533 1.32237 1.93736 1.20996 0.95359 0.96042 1.00735 1.20316 0.99180 0.90708 1.03912 0.92930 0.96247 0.96236 0.92713 0.92741 0.91925 0.91923 0.77179 0.76529 0.90931 0.90400 0.77337 0.90910 0.90310 0.84346 0.84345 0.83948 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.13 2.35 5.67 -4.04 -0.02 2.33 16 12 N -0.74 -10.37 5.56 -65.22 -0.36 -10.74 16 13 C 0.70 10.12 8.57 -86.92 -0.74 9.37 16 14 O -0.59 -11.11 16.34 5.28 0.09 -11.02 16 15 N -0.75 -7.20 5.51 -65.23 -0.36 -7.56 16 16 C 0.11 0.83 5.31 -4.04 -0.02 0.81 16 17 C 0.10 0.54 3.28 -26.73 -0.09 0.46 16 18 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 19 O -0.55 -3.57 13.25 -40.08 -0.53 -4.10 16 20 C 0.03 0.13 4.37 37.16 0.16 0.29 16 21 O -0.30 -2.09 10.10 -24.42 -0.25 -2.34 16 22 C 0.12 0.82 6.69 -39.23 -0.26 0.56 16 23 C -0.18 -1.04 9.04 -39.44 -0.36 -1.40 16 24 C -0.11 -0.67 10.02 -39.53 -0.40 -1.07 16 25 C 0.06 0.40 7.30 -39.42 -0.29 0.11 16 26 F -0.14 -1.14 17.27 2.25 0.04 -1.10 16 27 C -0.11 -0.66 10.02 -39.53 -0.40 -1.06 16 28 C -0.12 -0.75 9.98 -39.44 -0.39 -1.15 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.39 4.41 8.49 -40.82 -0.35 4.06 16 37 H 0.40 3.05 8.49 -40.82 -0.35 2.70 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.38 1.39 9.04 45.56 0.41 1.80 16 41 H 0.07 0.24 7.65 -51.93 -0.40 -0.16 16 42 H 0.08 0.27 7.67 -51.93 -0.40 -0.12 16 43 H 0.14 0.52 6.30 -52.49 -0.33 0.19 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 46 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -35.43 398.37 -9.17 -44.61 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.02 Total: 1.91 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.50 Total: -6.06 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.01 Total: -44.25 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.69 Total: -17.46 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.43 -9.17 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171448093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.349 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds