Wall clock time and date at job start Tue Mar 31 2020 23:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00120 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00408 * 3 2 1 7 7 C 1.37875 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 C 1.52996 * 109.47059 * 179.72339 * 16 15 13 18 18 H 1.09008 * 109.47304 * 304.99667 * 17 16 15 19 19 O 1.42902 * 109.47328 * 64.99617 * 17 16 15 20 20 C 1.53003 * 109.47530 * 184.99929 * 17 16 15 21 21 O 1.42894 * 109.47529 * 174.99893 * 20 17 16 22 22 C 1.35948 * 117.00316 * 180.02562 * 21 20 17 23 23 C 1.38715 * 120.02608 * 359.72036 * 22 21 20 24 24 C 1.38149 * 119.96488 * 179.79311 * 23 22 21 25 25 C 1.38454 * 120.03420 * 0.48511 * 24 23 22 26 26 F 1.35094 * 119.97154 * 179.72421 * 25 24 23 27 27 C 1.38453 * 120.05622 * 359.74594 * 25 24 23 28 28 C 1.38150 * 120.03298 * 0.02562 * 27 25 24 29 29 H 0.97010 * 119.99934 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 31 31 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 32 32 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 33 33 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 34 34 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 35 35 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 36 36 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 39 39 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 40 40 H 0.96696 * 113.99765 * 60.00422 * 19 17 16 41 41 H 1.08998 * 109.46886 * 295.00118 * 20 17 16 42 42 H 1.09002 * 109.46923 * 54.99368 * 20 17 16 43 43 H 1.07997 * 120.01107 * 0.02562 * 23 22 21 44 44 H 1.08001 * 119.98271 * 180.21583 * 24 23 22 45 45 H 1.08008 * 119.98288 * 179.97438 * 27 25 24 46 46 H 1.08004 * 120.01490 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 7 2.4321 -6.1006 -0.0037 13 6 1.9828 -7.3713 -0.0047 14 8 0.7873 -7.5935 -0.0058 15 7 2.8586 -8.3958 -0.0045 16 6 2.3702 -9.7769 -0.0118 17 6 3.5601 -10.7386 -0.0170 18 1 4.2132 -10.5041 -0.8576 19 8 4.2886 -10.6016 1.2048 20 6 3.0536 -12.1762 -0.1503 21 8 4.1666 -13.0641 -0.2722 22 6 3.8884 -14.3885 -0.4007 23 6 2.5714 -14.8241 -0.4035 24 6 2.2900 -16.1699 -0.5385 25 6 3.3219 -17.0847 -0.6610 26 9 3.0454 -18.4010 -0.7874 27 6 4.6370 -16.6518 -0.6536 28 6 4.9212 -15.3061 -0.5234 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5562 -0.8919 31 1 0.6240 -2.5574 0.8880 32 1 2.8712 -3.6048 0.8890 33 1 2.8724 -3.6040 -0.8910 34 1 0.8543 -5.0441 -0.8939 35 1 0.8525 -5.0455 0.8861 36 1 3.3857 -5.9235 -0.0032 37 1 3.8122 -8.2185 -0.0040 38 1 1.7647 -9.9529 0.8773 39 1 1.7646 -9.9435 -0.9026 40 1 3.7686 -10.7955 1.9966 41 1 2.4732 -12.4403 0.7337 42 1 2.4240 -12.2589 -1.0362 43 1 1.7664 -14.1111 -0.3039 44 1 1.2646 -16.5089 -0.5442 45 1 5.4411 -17.3666 -0.7488 46 1 5.9472 -14.9687 -0.5173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171448093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:30 Heat of formation + Delta-G solvation = -179.490156 kcal Electronic energy + Delta-G solvation = -27175.646637 eV Core-core repulsion = 22785.607702 eV Total energy + Delta-G solvation = -4390.038935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84066 -41.29251 -40.96767 -39.06533 -37.75936 -36.95892 -35.32288 -35.15076 -33.03278 -32.36376 -31.65793 -30.18373 -28.62443 -26.88245 -24.87256 -24.15949 -23.21329 -22.69637 -22.28068 -21.78065 -19.50755 -19.18781 -18.63370 -18.44773 -18.06550 -17.68910 -17.28085 -16.86000 -16.76755 -16.55662 -16.43561 -15.98334 -15.73082 -15.51961 -15.35574 -15.13137 -15.00483 -14.63228 -14.33186 -14.22418 -14.00105 -13.80835 -13.71527 -13.43478 -13.35111 -13.15121 -12.73278 -12.53081 -12.35349 -12.20132 -11.87783 -11.73779 -11.65365 -11.65154 -11.35677 -11.22162 -11.08936 -10.53842 -10.40651 -10.20591 -9.77290 -9.13769 -8.18173 -6.29509 0.14345 0.17711 1.42893 1.44083 1.53847 1.55871 2.13475 2.14018 2.43323 2.54841 3.15867 3.27066 3.32000 3.41539 3.63010 3.68814 3.80852 3.84114 3.94755 4.11410 4.18970 4.25220 4.27602 4.30658 4.39403 4.58408 4.60919 4.64738 4.89143 4.93535 4.98142 5.01631 5.10986 5.14050 5.18876 5.19712 5.42299 5.48821 5.56117 5.67432 5.73221 5.86035 5.99238 6.24415 6.31206 6.72606 6.87883 7.09884 7.40179 7.57264 8.93931 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.047519 B = 0.001215 C = 0.001194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.100696 B =23036.410062 C =23452.920556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.150 3.850 12 N -0.731 5.731 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.727 5.727 16 C 0.112 3.888 17 C 0.115 3.885 18 H 0.118 0.882 19 O -0.562 6.562 20 C 0.025 3.975 21 O -0.313 6.313 22 C 0.113 3.887 23 C -0.183 4.183 24 C -0.116 4.116 25 C 0.035 3.965 26 F -0.152 7.152 27 C -0.113 4.113 28 C -0.132 4.132 29 H 0.263 0.737 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.412 0.588 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.390 0.610 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 -35.338 -0.363 37.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.522 6.522 15 N -0.384 5.384 16 C -0.013 4.013 17 C 0.055 3.945 18 H 0.136 0.864 19 O -0.370 6.370 20 C -0.051 4.051 21 O -0.227 6.227 22 C 0.067 3.933 23 C -0.202 4.202 24 C -0.135 4.135 25 C 0.016 3.984 26 F -0.131 7.131 27 C -0.132 4.132 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.248 0.752 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.240 0.760 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.175 0.825 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.831 -35.218 -0.755 36.854 hybrid contribution -0.149 0.724 0.279 0.790 sum 10.682 -34.494 -0.476 36.114 Atomic orbital electron populations 1.70112 1.07935 1.27754 1.51717 1.25996 0.95707 1.03465 0.94767 0.85434 0.78712 0.78378 0.78437 1.19854 1.21062 1.18441 1.21692 0.93762 0.92053 1.50451 0.91556 1.18942 0.94463 0.92917 0.95131 1.21594 0.98447 0.91772 1.02111 1.21070 0.91319 0.84588 1.00500 1.45033 1.10874 1.03643 1.79066 1.16128 0.84995 0.81386 0.77732 1.90899 1.16320 1.84838 1.60112 1.44732 1.09450 1.04388 1.79870 1.21768 0.96241 0.79647 1.03675 1.21945 0.92929 0.90272 0.89352 0.86423 1.86636 1.42156 1.92145 1.16038 1.23604 0.88355 0.88809 1.04283 1.86110 1.35200 1.13829 1.87564 1.19234 0.93748 0.83706 0.96608 1.21374 0.96023 0.96581 1.06209 1.21196 0.99923 0.92520 0.99814 1.17886 0.94701 0.77915 1.07891 1.91470 1.94647 1.32982 1.93967 1.21185 0.95502 0.96381 1.00081 1.20512 0.99768 0.90773 1.03954 0.92840 0.98897 0.98898 0.91399 0.91371 0.93446 0.93473 0.75194 0.75011 0.90806 0.90389 0.75962 0.89307 0.88988 0.82453 0.83007 0.82416 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.20 4.97 29.84 0.15 1.35 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.15 5.23 5.67 86.38 0.49 5.72 16 12 N -0.73 -19.51 5.56 -478.52 -2.66 -22.17 16 13 C 0.70 19.36 8.57 179.05 1.53 20.90 16 14 O -0.64 -23.79 16.34 -4.01 -0.07 -23.85 16 15 N -0.73 -12.64 5.51 -478.54 -2.64 -15.27 16 16 C 0.11 1.42 5.31 86.38 0.46 1.88 16 17 C 0.11 1.00 3.28 30.59 0.10 1.10 16 18 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 19 O -0.56 -6.11 13.25 -144.34 -1.91 -8.02 16 20 C 0.03 0.18 4.37 71.98 0.31 0.49 16 21 O -0.31 -3.83 10.10 -88.32 -0.89 -4.72 16 22 C 0.11 1.36 6.69 22.49 0.15 1.51 16 23 C -0.18 -1.80 9.04 22.36 0.20 -1.60 16 24 C -0.12 -1.28 10.02 22.30 0.22 -1.05 16 25 C 0.04 0.48 7.30 22.37 0.16 0.64 16 26 F -0.15 -2.43 17.27 44.97 0.78 -1.65 16 27 C -0.11 -1.25 10.02 22.30 0.22 -1.02 16 28 C -0.13 -1.48 9.98 22.36 0.22 -1.26 16 29 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.41 8.20 8.49 -92.71 -0.79 7.41 16 37 H 0.41 5.25 8.49 -92.71 -0.79 4.46 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.39 2.02 9.04 -74.06 -0.67 1.35 16 41 H 0.09 0.34 7.65 -2.39 -0.02 0.32 16 42 H 0.09 0.41 7.67 -2.39 -0.02 0.39 16 43 H 0.16 0.82 6.30 -2.91 -0.02 0.81 16 44 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -77.08 398.37 -1.21 -78.29 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -1.22 Total: 12.89 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.09 Total: -4.45 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -5.01 Total: -93.99 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -2.87 Total: -36.60 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.08 -1.21 -78.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171448093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.202 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds