Wall clock time and date at job start Tue Mar 31 2020 23:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47551 * 270.00209 * 3 2 1 5 5 H 1.48505 * 109.46964 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47505 * 149.99845 * 3 2 1 7 7 C 1.37881 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99597 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47617 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99534 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00083 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99756 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47510 * 324.99953 * 14 13 11 16 16 C 1.52999 * 109.46974 * 204.99834 * 14 13 11 17 17 N 1.46501 * 109.47289 * 55.00295 * 16 14 13 18 18 C 1.35761 * 119.62485 * 89.99520 * 17 16 14 19 19 C 1.35346 * 120.70252 * 179.97438 * 18 17 16 20 20 C 1.40196 * 119.94872 * 359.97438 * 19 18 17 21 21 C 1.36400 * 119.26458 * 359.97438 * 20 19 18 22 22 C 1.34659 * 119.62348 * 270.21835 * 17 16 14 23 23 O 1.22061 * 119.98796 * 0.03541 * 22 17 16 24 24 C 1.50700 * 109.46760 * 85.00152 * 14 13 11 25 25 C 1.38230 * 120.00236 * 39.72789 * 24 14 13 26 26 C 1.38238 * 120.00289 * 179.80842 * 25 24 14 27 27 C 1.38239 * 119.99800 * 0.39548 * 26 25 24 28 28 C 1.38237 * 119.99886 * 359.85544 * 27 26 25 29 29 C 1.38235 * 119.99825 * 359.95677 * 28 27 26 30 30 H 0.96998 * 120.00406 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47019 * 60.00886 * 9 7 2 32 32 H 1.08998 * 109.47711 * 300.00297 * 9 7 2 33 33 H 1.08998 * 109.47090 * 60.00294 * 10 9 7 34 34 H 1.08998 * 109.46995 * 300.00717 * 10 9 7 35 35 H 0.96999 * 120.00326 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.47341 * 294.99803 * 16 14 13 37 37 H 1.08999 * 109.47332 * 175.00122 * 16 14 13 38 38 H 1.08001 * 119.64874 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.02652 * 179.97438 * 19 18 17 40 40 H 1.07998 * 120.36756 * 180.02562 * 20 19 18 41 41 H 1.08002 * 120.34439 * 179.97438 * 21 20 19 42 42 H 1.08004 * 120.00414 * 359.97438 * 25 24 14 43 43 H 1.07999 * 120.00727 * 180.22656 * 26 25 24 44 44 H 1.07995 * 120.00457 * 179.83378 * 27 26 25 45 45 H 1.08001 * 120.00195 * 179.97438 * 28 27 26 46 46 H 1.08004 * 120.00126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1343 -0.0008 14 6 1.4334 -7.4031 -0.0008 15 1 0.5225 -7.2968 0.5883 16 6 2.3105 -8.4983 0.6093 17 7 2.7566 -8.0815 1.9410 18 6 2.0044 -8.3907 3.0280 19 6 2.3962 -8.0169 4.2685 20 6 3.5905 -7.3031 4.4398 21 6 4.3455 -6.9942 3.3466 22 6 3.9059 -7.3920 2.0724 23 8 4.5689 -7.1174 1.0851 24 6 1.0756 -7.7764 -1.4163 25 6 1.9825 -7.5636 -2.4376 26 6 1.6558 -7.9097 -3.7354 27 6 0.4189 -8.4610 -4.0132 28 6 -0.4900 -8.6690 -2.9927 29 6 -0.1618 -8.3265 -1.6943 30 1 -0.4850 0.8400 -0.0004 31 1 0.6243 -2.5567 -0.8904 32 1 0.6248 -2.5571 0.8896 33 1 2.8720 -3.6043 0.8895 34 1 2.8721 -3.6042 -0.8904 35 1 3.1359 -6.1343 0.0003 36 1 3.1783 -8.6663 -0.0286 37 1 1.7356 -9.4208 0.6909 38 1 1.0837 -8.9408 2.9016 39 1 1.7891 -8.2684 5.1256 40 1 3.9098 -7.0018 5.4266 41 1 5.2684 -6.4445 3.4585 42 1 2.9475 -7.1294 -2.2212 43 1 2.3657 -7.7469 -4.5328 44 1 0.1625 -8.7289 -5.0275 45 1 -1.4566 -9.0993 -3.2097 46 1 -0.8717 -8.4893 -0.8969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291495837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:50 Heat of formation + Delta-G solvation = -17.423965 kcal Electronic energy + Delta-G solvation = -29380.715485 eV Core-core repulsion = 25428.473491 eV Total energy + Delta-G solvation = -3952.241993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69572 -39.76193 -38.55616 -37.07352 -35.97263 -33.84128 -33.37747 -31.67351 -30.92680 -30.56764 -30.08996 -28.65504 -25.82400 -24.69615 -23.78543 -22.75179 -22.44599 -21.88352 -20.54760 -19.59628 -17.94758 -17.47021 -17.04584 -16.86141 -16.52146 -16.26081 -15.76709 -15.51979 -15.06570 -14.78032 -14.58429 -14.45624 -14.33834 -14.22806 -13.48415 -13.45343 -13.29075 -13.06800 -12.64208 -12.48890 -12.40941 -12.14011 -12.10831 -11.99841 -11.71358 -11.26902 -11.08888 -11.05047 -10.88435 -10.55466 -10.36045 -10.09678 -9.89191 -9.60382 -9.16084 -9.03259 -8.95116 -8.85538 -8.68860 -8.27122 -8.16008 -5.91356 -3.95151 0.63117 1.25827 1.38108 1.68538 2.37892 3.30219 3.36929 3.42269 3.44687 3.45880 3.53206 3.76049 4.28286 4.38855 4.51998 4.57022 4.70371 4.73022 4.82313 4.92738 4.98439 5.04202 5.06684 5.08681 5.16127 5.41039 5.43548 5.48030 5.56159 5.75575 5.81560 5.85915 5.92094 6.01051 6.09301 6.28155 6.31521 6.35206 6.41228 6.47029 6.50331 6.77502 6.88689 6.95030 6.97650 7.79787 7.82267 7.92111 8.02164 8.12306 8.44961 8.85462 9.13356 9.68004 11.19684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.003888 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.212365 B = 7200.799104 C = 9734.859691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.040 3.960 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.534 6.534 13 N -0.738 5.738 14 C 0.173 3.827 15 H 0.097 0.903 16 C 0.086 3.914 17 N -0.491 5.491 18 C 0.133 3.867 19 C -0.231 4.231 20 C -0.017 4.017 21 C -0.241 4.241 22 C 0.517 3.483 23 O -0.553 6.553 24 C -0.094 4.094 25 C -0.097 4.097 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.122 4.122 29 C -0.102 4.102 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.097 -25.589 3.830 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.409 6.409 13 N -0.397 5.397 14 C 0.067 3.933 15 H 0.115 0.885 16 C -0.036 4.036 17 N -0.201 5.201 18 C 0.005 3.995 19 C -0.254 4.254 20 C -0.038 4.038 21 C -0.263 4.263 22 C 0.321 3.679 23 O -0.436 6.436 24 C -0.096 4.096 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.140 4.140 29 C -0.120 4.120 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.248 0.752 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.505 -25.281 3.182 25.721 hybrid contribution 0.717 1.008 0.045 1.238 sum 4.222 -24.274 3.227 24.849 Atomic orbital electron populations 1.69999 1.06047 1.26485 1.50436 1.25013 0.94804 0.99161 0.95346 0.86601 0.79815 0.83531 0.78075 1.20677 1.21238 1.19858 1.21238 0.92965 0.91016 1.51103 0.92616 1.18874 0.93083 0.89350 0.98451 1.21846 1.00660 0.91877 1.02471 1.21572 0.88615 0.85693 0.73982 1.90647 1.14383 1.87648 1.48203 1.46583 1.11176 1.04324 1.77575 1.20019 0.96140 0.84236 0.92930 0.88481 1.22375 1.01000 0.97638 0.82590 1.45484 1.20762 1.45870 1.07955 1.21969 0.95309 0.95720 0.86456 1.20670 1.00445 1.07714 0.96531 1.21465 0.92128 0.90791 0.99439 1.22155 1.04311 1.08567 0.91254 1.17155 0.80033 0.79264 0.91496 1.90880 1.55098 1.57501 1.40158 1.20044 0.94825 0.99604 0.95130 1.21002 0.99587 0.98421 0.92531 1.21143 0.97019 0.99198 0.96557 1.21159 0.94064 0.99411 0.99073 1.21096 0.99390 1.00673 0.92870 1.20983 0.95543 0.98492 0.97016 0.93026 0.95901 0.95962 0.90437 0.90347 0.75180 0.87348 0.87563 0.82147 0.83754 0.84772 0.83310 0.85998 0.86053 0.86228 0.86077 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.09 13.29 55.43 0.74 -27.36 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.50 9.11 -34.44 -0.31 -15.82 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.13 4.26 -27.88 -0.12 1.01 16 10 C -0.13 -2.89 5.64 -27.88 -0.16 -3.04 16 11 C 0.51 10.66 7.79 -10.99 -0.09 10.58 16 12 O -0.53 -12.95 15.65 5.55 0.09 -12.86 16 13 N -0.74 -11.84 3.70 -54.93 -0.20 -12.05 16 14 C 0.17 2.21 2.48 -69.08 -0.17 2.04 16 15 H 0.10 1.33 7.44 -51.93 -0.39 0.94 16 16 C 0.09 0.80 5.06 -4.04 -0.02 0.78 16 17 N -0.49 -4.98 2.49 -119.77 -0.30 -5.28 16 18 C 0.13 1.00 10.28 -16.84 -0.17 0.83 16 19 C -0.23 -1.68 10.01 -39.88 -0.40 -2.07 16 20 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 21 C -0.24 -2.66 9.99 -39.38 -0.39 -3.06 16 22 C 0.52 6.67 6.69 -15.45 -0.10 6.56 16 23 O -0.55 -8.64 14.33 4.86 0.07 -8.57 16 24 C -0.09 -1.21 4.91 -104.63 -0.51 -1.72 16 25 C -0.10 -1.26 9.33 -39.58 -0.37 -1.62 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 29 C -0.10 -1.20 9.67 -39.58 -0.38 -1.58 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.41 6.48 5.76 -40.82 -0.24 6.24 16 36 H 0.11 1.09 7.39 -51.93 -0.38 0.71 16 37 H 0.11 0.61 8.01 -51.93 -0.42 0.19 16 38 H 0.16 0.65 8.04 -52.49 -0.42 0.23 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.12 1.57 7.71 -52.48 -0.40 1.17 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.21 8.04 -52.48 -0.42 0.79 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -38.05 390.49 -10.07 -48.12 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.43 Total: 6.08 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -4.89 Total: -11.24 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.23 Total: -44.68 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.16 Total: -21.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.05 -10.07 -48.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291495837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.700 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds