Wall clock time and date at job start Tue Mar 31 2020 23:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 299.99917 * 3 2 1 6 6 H 1.48495 * 109.47552 * 59.99678 * 3 2 1 7 7 C 1.39894 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00346 * 175.56324 * 7 2 1 9 9 C 1.41157 * 119.99537 * 355.55422 * 7 2 1 10 10 C 1.40871 * 120.16358 * 214.78306 * 9 7 2 11 11 C 1.36370 * 119.83026 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16982 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83360 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99967 * 35.29289 * 13 12 11 15 15 O 1.21574 * 120.00298 * 355.71261 * 14 13 12 16 16 N 1.34786 * 119.99855 * 175.71242 * 14 13 12 17 17 C 1.46497 * 119.99785 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46692 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.47419 * 304.99567 * 18 17 16 20 20 O 1.42910 * 109.47377 * 64.99896 * 18 17 16 21 21 C 1.53000 * 109.46918 * 184.99531 * 18 17 16 22 22 C 1.50699 * 109.47030 * 174.99947 * 21 18 17 23 23 C 1.38238 * 120.00243 * 90.00605 * 22 21 18 24 24 C 1.38234 * 120.00653 * 180.02562 * 23 22 21 25 25 C 1.38236 * 119.99647 * 359.97438 * 24 23 22 26 26 C 1.38235 * 119.99952 * 0.25848 * 25 24 23 27 27 C 1.38233 * 120.00258 * 359.48779 * 26 25 24 28 28 C 1.39481 * 120.33046 * 0.24793 * 12 11 10 29 29 C 1.36370 * 120.16801 * 359.44534 * 28 12 11 30 30 H 0.96990 * 120.00487 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.08373 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.91594 * 180.02562 * 11 10 9 33 33 H 0.97003 * 119.99985 * 215.29006 * 13 12 11 34 34 H 0.96999 * 119.99533 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47701 * 59.99866 * 17 16 14 36 36 H 1.09005 * 109.46648 * 299.99266 * 17 16 14 37 37 H 0.96695 * 113.99744 * 59.99741 * 20 18 17 38 38 H 1.08996 * 109.47261 * 55.00181 * 21 18 17 39 39 H 1.08999 * 109.47392 * 294.99648 * 21 18 17 40 40 H 1.08010 * 119.99644 * 359.97438 * 23 22 21 41 41 H 1.07995 * 119.99980 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.99914 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99804 * 179.72702 * 26 25 24 44 44 H 1.07999 * 120.00391 * 180.23490 * 27 26 25 45 45 H 1.07999 * 119.91400 * 179.70560 * 28 12 11 46 46 H 1.08004 * 120.08698 * 180.24891 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0084 -1.2115 -0.0005 8 1 3.0859 -1.2128 -0.0729 9 6 1.3058 -2.4321 0.0937 10 6 1.8651 -3.5185 0.7947 11 6 1.1806 -4.6948 0.8810 12 6 -0.0699 -4.8241 0.2770 13 7 -0.7625 -6.0286 0.3691 14 6 -0.6807 -6.7688 1.4924 15 8 0.0581 -6.4249 2.3945 16 7 -1.4181 -7.8903 1.6156 17 6 -1.3296 -8.6945 2.8369 18 6 -2.2609 -9.9028 2.7203 19 1 -3.2718 -9.5622 2.4965 20 8 -1.8030 -10.7577 1.6706 21 6 -2.2633 -10.6742 4.0416 22 6 -3.2717 -11.7917 3.9690 23 6 -2.8902 -13.0382 3.5090 24 6 -3.8152 -14.0632 3.4419 25 6 -5.1218 -13.8419 3.8353 26 6 -5.5045 -12.5941 4.2908 27 6 -4.5782 -11.5706 4.3628 28 6 -0.6277 -3.7547 -0.4236 29 6 0.0421 -2.5702 -0.5132 30 1 -0.4850 0.8399 0.0004 31 1 2.8335 -3.4200 1.2625 32 1 1.6079 -5.5285 1.4184 33 1 -1.3039 -6.3349 -0.3753 34 1 -2.0079 -8.1644 0.8960 35 1 -1.6264 -8.0889 3.6932 36 1 -0.3039 -9.0376 2.9724 37 1 -0.9080 -11.0989 1.8035 38 1 -2.5270 -9.9992 4.8558 39 1 -1.2721 -11.0904 4.2212 40 1 -1.8694 -13.2110 3.2012 41 1 -3.5171 -15.0369 3.0821 42 1 -5.8446 -14.6426 3.7825 43 1 -6.5263 -12.4200 4.5940 44 1 -4.8763 -10.5967 4.7223 45 1 -1.5943 -3.8638 -0.8928 46 1 -0.3928 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303985192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:30 Heat of formation + Delta-G solvation = -59.134860 kcal Electronic energy + Delta-G solvation = -27258.104580 eV Core-core repulsion = 23304.053866 eV Total energy + Delta-G solvation = -3954.050713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43351 -40.34531 -39.32869 -38.42979 -36.17420 -35.32923 -34.59056 -33.77254 -31.70717 -31.48529 -31.00761 -30.08011 -27.34833 -26.19813 -23.59310 -23.40403 -23.04058 -22.59865 -22.03668 -21.48424 -19.46413 -19.09922 -18.47315 -17.70839 -17.29877 -17.08309 -16.90692 -16.32852 -16.06206 -15.90594 -15.71608 -15.56939 -15.35397 -14.89119 -14.69874 -14.49525 -14.21206 -14.00023 -13.83618 -13.66581 -13.52188 -13.32870 -13.21570 -12.84484 -12.75646 -12.69078 -12.47019 -12.11804 -11.86669 -11.79962 -11.78356 -11.37818 -11.25328 -11.15844 -10.98489 -10.64773 -10.08754 -9.75461 -9.52520 -9.44230 -8.66919 -8.47989 -6.30339 0.49113 0.56891 0.86113 1.16610 1.40595 1.47623 1.55877 1.76949 2.21195 2.26552 2.83212 2.91792 3.32505 3.51891 3.60572 3.70886 3.96104 4.06953 4.14162 4.22935 4.25715 4.35744 4.41329 4.47516 4.55307 4.69684 4.71694 4.78582 4.90418 4.95252 5.08620 5.15415 5.16956 5.22271 5.24225 5.35169 5.45681 5.48882 5.63152 5.68712 5.71401 5.76364 5.83780 6.05524 6.13623 6.18852 6.27254 6.42106 6.70837 6.80124 6.99326 7.03459 7.15900 7.66335 8.45000 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037041 B = 0.001577 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.739369 B =17748.114225 C =17901.628927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.098 4.098 12 C 0.042 3.958 13 N -0.660 5.660 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.725 5.725 17 C 0.108 3.892 18 C 0.121 3.879 19 H 0.104 0.896 20 O -0.563 6.563 21 C -0.107 4.107 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.133 4.133 28 C -0.121 4.121 29 C -0.156 4.156 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.387 0.613 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -25.061 5.319 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.119 4.119 12 C -0.053 4.053 13 N -0.308 5.308 14 C 0.393 3.607 15 O -0.505 6.505 16 N -0.382 5.382 17 C -0.017 4.017 18 C 0.061 3.939 19 H 0.122 0.878 20 O -0.370 6.370 21 C -0.145 4.145 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.142 4.142 29 C -0.177 4.177 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.033 -24.523 5.910 27.533 hybrid contribution 0.378 0.534 -0.198 0.684 sum -10.656 -23.989 5.712 26.864 Atomic orbital electron populations 1.69832 1.08557 1.29819 1.38957 1.26723 0.95806 1.04263 0.91633 0.85060 0.79065 0.76174 0.78747 1.18417 1.18744 1.19495 1.19733 0.94795 0.91343 1.47045 0.91004 1.18042 0.93446 0.92736 0.89624 1.20924 1.01563 0.95452 1.05871 1.20524 0.93737 0.97483 1.00118 1.17106 0.93015 0.86422 1.08729 1.41900 1.51525 1.20767 1.16599 1.16204 0.81250 0.80925 0.82370 1.90882 1.44347 1.73002 1.42308 1.44802 1.47152 1.24500 1.21728 1.22023 1.00879 0.92364 0.86396 1.21947 0.97485 0.86979 0.87449 0.87787 1.86598 1.37470 1.66632 1.46344 1.21220 0.99381 0.96039 0.97834 1.19828 0.94637 0.95029 0.98957 1.21254 1.00425 0.92700 0.98981 1.21436 0.93764 0.99873 0.99959 1.21440 0.96816 0.97720 0.99482 1.21406 1.00227 0.93480 0.99909 1.21322 0.93218 0.99884 1.00681 1.20533 0.99361 0.92023 1.02274 1.21150 0.97459 0.96335 1.02715 0.90549 0.88638 0.87421 0.74953 0.75220 0.91483 0.91492 0.76309 0.88902 0.88921 0.85011 0.84773 0.84769 0.84838 0.85218 0.85806 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.18 10.60 21.82 0.23 -44.95 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -27.87 9.02 23.39 0.21 -27.66 16 8 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 9 C 0.06 3.59 5.55 -21.28 -0.12 3.47 16 10 C -0.22 -11.61 9.74 22.48 0.22 -11.39 16 11 C -0.10 -4.87 8.61 22.13 0.19 -4.68 16 12 C 0.04 1.85 6.31 38.56 0.24 2.09 16 13 N -0.66 -22.47 5.31 -316.79 -1.68 -24.15 16 14 C 0.69 23.69 8.40 179.05 1.50 25.20 16 15 O -0.62 -27.46 13.76 -3.95 -0.05 -27.51 16 16 N -0.72 -16.46 5.51 -478.54 -2.64 -19.10 16 17 C 0.11 1.99 5.31 86.38 0.46 2.45 16 18 C 0.12 1.53 2.99 30.59 0.09 1.62 16 19 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 20 O -0.56 -7.47 12.78 -148.98 -1.90 -9.37 16 21 C -0.11 -1.14 5.03 29.85 0.15 -0.99 16 22 C -0.08 -1.14 4.97 -19.86 -0.10 -1.24 16 23 C -0.12 -1.54 9.40 22.27 0.21 -1.33 16 24 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 25 C -0.14 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.13 -1.85 9.70 22.27 0.22 -1.64 16 28 C -0.12 -5.53 9.90 22.13 0.22 -5.32 16 29 C -0.16 -8.30 8.61 22.48 0.19 -8.10 16 30 H 0.28 13.77 8.30 -92.72 -0.77 13.00 16 31 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 33 H 0.41 10.51 8.83 -92.71 -0.82 9.69 16 34 H 0.41 7.14 8.49 -92.71 -0.79 6.35 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.39 3.01 9.04 -74.06 -0.67 2.34 16 38 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 39 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 40 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.13 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 45 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -73.05 389.80 -0.44 -73.49 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -1.24 Total: 40.01 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 4.82 Total: -30.22 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -4.09 Total: -88.20 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.96 Total: -36.88 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -73.05 -0.44 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303985192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds