Wall clock time and date at job start Tue Mar 31 2020 23:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48503 * 109.46931 * 270.00314 * 3 2 1 5 5 H 1.48502 * 109.47150 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.46946 * 150.00189 * 3 2 1 7 7 C 1.37869 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00482 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47435 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99919 * 86.00150 * 10 9 7 12 12 C 1.50696 * 109.46811 * 90.00285 * 11 10 9 13 13 C 1.38229 * 119.62174 * 94.98081 * 12 11 10 14 14 C 1.38627 * 119.16007 * 179.79168 * 13 12 11 15 15 C 1.38673 * 118.42452 * 0.46619 * 14 13 12 16 16 C 1.38182 * 119.15977 * 359.50849 * 15 14 13 17 17 N 1.31855 * 119.61688 * 274.99740 * 12 11 10 18 18 C 1.34774 * 120.00140 * 266.00172 * 10 9 7 19 19 O 1.21286 * 120.00182 * 184.98184 * 18 10 9 20 20 C 1.50700 * 119.99845 * 4.98857 * 18 10 9 21 21 H 1.08997 * 109.47346 * 45.46721 * 20 18 10 22 22 O 1.42906 * 109.47230 * 165.46619 * 20 18 10 23 23 C 1.52999 * 109.46951 * 285.46244 * 20 18 10 24 24 C 1.50706 * 109.47111 * 175.88284 * 23 20 18 25 25 C 1.38231 * 119.99835 * 269.72820 * 24 23 20 26 26 C 1.38245 * 119.99543 * 179.76462 * 25 24 23 27 27 C 1.38230 * 119.99969 * 0.51199 * 26 25 24 28 28 C 1.38238 * 120.00257 * 359.74039 * 27 26 25 29 29 C 1.38235 * 119.99649 * 0.02562 * 28 27 26 30 30 H 0.96999 * 119.99880 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46804 * 59.99421 * 9 7 2 32 32 H 1.08994 * 109.46835 * 300.00361 * 9 7 2 33 33 H 1.08998 * 109.47158 * 330.00317 * 11 10 9 34 34 H 1.08996 * 109.46981 * 210.00189 * 11 10 9 35 35 H 1.07997 * 120.41598 * 359.97438 * 13 12 11 36 36 H 1.08005 * 120.78735 * 180.23368 * 14 13 12 37 37 H 1.07992 * 120.42179 * 179.78433 * 15 14 13 38 38 H 1.08000 * 119.61988 * 180.24940 * 16 15 14 39 39 H 0.96697 * 113.99706 * 59.99404 * 22 20 18 40 40 H 1.08995 * 109.47345 * 295.88020 * 23 20 18 41 41 H 1.09001 * 109.47452 * 55.88444 * 23 20 18 42 42 H 1.07996 * 120.00505 * 359.97438 * 25 24 23 43 43 H 1.07997 * 119.99698 * 180.22996 * 26 25 24 44 44 H 1.07998 * 119.99904 * 179.72802 * 27 26 25 45 45 H 1.07993 * 119.99801 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.99875 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.7472 -4.1125 1.2632 12 6 1.8566 -5.2049 1.7964 13 6 2.1573 -6.5261 1.5227 14 6 1.3339 -7.5236 2.0215 15 6 0.2285 -7.1530 2.7723 16 6 -0.0083 -5.8116 3.0052 17 7 0.7993 -4.8895 2.5183 18 6 2.5782 -4.1772 -1.1666 19 8 3.2948 -5.1557 -1.1633 20 6 2.1073 -3.5926 -2.4734 21 1 2.2230 -2.5091 -2.4494 22 8 2.8856 -4.1311 -3.5441 23 6 0.6336 -3.9437 -2.6875 24 6 0.1353 -3.2752 -3.9429 25 6 -0.4199 -2.0109 -3.8790 26 6 -0.8726 -1.3958 -5.0313 27 6 -0.7797 -2.0494 -6.2458 28 6 -0.2293 -3.3159 -6.3090 29 6 0.2278 -3.9290 -5.1574 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8896 33 1 2.7948 -3.2976 1.9855 34 1 3.7487 -4.5091 1.0964 35 1 3.0244 -6.7781 0.9302 36 1 1.5463 -8.5645 1.8269 37 1 -0.4365 -7.9033 3.1736 38 1 -0.8648 -5.5149 3.5923 39 1 2.8304 -5.0931 -3.6254 40 1 0.5279 -5.0241 -2.7847 41 1 0.0498 -3.5967 -1.8349 42 1 -0.4970 -1.5023 -2.9294 43 1 -1.3030 -0.4065 -4.9820 44 1 -1.1374 -1.5706 -7.1454 45 1 -0.1571 -3.8266 -7.2578 46 1 0.6575 -4.9186 -5.2066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355665992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:46 Heat of formation + Delta-G solvation = -39.861631 kcal Electronic energy + Delta-G solvation = -29834.650649 eV Core-core repulsion = 25881.435685 eV Total energy + Delta-G solvation = -3953.214964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.60451 -40.82445 -39.91026 -37.68169 -36.85591 -34.69260 -33.95054 -33.34795 -32.75558 -31.69301 -30.08689 -29.32846 -27.60315 -25.61574 -24.64501 -24.29736 -23.37925 -23.04515 -22.00642 -20.57095 -18.81421 -18.45445 -17.96204 -17.64238 -17.52299 -17.05820 -16.76573 -16.49783 -16.30227 -16.19152 -15.95339 -15.51344 -15.28590 -14.98837 -14.40567 -14.29822 -14.23162 -14.18300 -13.98587 -13.73549 -13.60377 -13.48948 -13.09883 -12.92594 -12.83815 -12.69312 -12.62942 -12.43244 -12.12307 -11.92794 -11.83144 -11.79170 -11.56902 -10.81278 -10.67056 -10.53594 -10.35835 -9.93602 -9.73863 -9.58280 -9.47110 -8.18909 -6.32111 0.13566 0.40160 0.48840 0.58163 1.39818 1.41822 1.49601 1.56614 2.16850 2.41863 2.91014 2.99495 3.11317 3.31029 3.38850 3.58401 3.81671 3.89782 3.94448 4.03352 4.13128 4.19332 4.22896 4.24577 4.26686 4.36698 4.48149 4.58894 4.59326 4.68050 4.73994 4.76971 4.87945 4.89664 4.95713 5.17327 5.24425 5.24816 5.27428 5.31238 5.60445 5.63440 5.69632 5.75409 5.80388 5.82534 6.05633 6.20142 6.46837 6.64621 6.78652 7.12903 7.15637 7.38718 8.86455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.004779 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.165123 B = 5857.169262 C = 7919.506709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.245 3.755 10 N -0.582 5.582 11 C 0.166 3.834 12 C 0.096 3.904 13 C -0.159 4.159 14 C -0.078 4.078 15 C -0.163 4.163 16 C 0.079 3.921 17 N -0.505 5.505 18 C 0.488 3.512 19 O -0.575 6.575 20 C 0.115 3.885 21 H 0.108 0.892 22 O -0.540 6.540 23 C -0.100 4.100 24 C -0.085 4.085 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.110 4.110 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.387 0.613 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -12.816 -4.552 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.069 0.931 9 C 0.124 3.876 10 N -0.312 5.312 11 C 0.042 3.958 12 C -0.042 4.042 13 C -0.179 4.179 14 C -0.104 4.104 15 C -0.183 4.183 16 C -0.078 4.078 17 N -0.215 5.215 18 C 0.276 3.724 19 O -0.457 6.457 20 C 0.053 3.947 21 H 0.126 0.874 22 O -0.346 6.346 23 C -0.138 4.138 24 C -0.085 4.085 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.128 4.128 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.190 0.810 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.164 0.836 45 H 0.168 0.832 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.618 -11.667 -4.468 12.764 hybrid contribution 0.388 0.133 0.542 0.679 sum -2.230 -11.534 -3.926 12.386 Atomic orbital electron populations 1.70001 1.06877 1.27959 1.50012 1.25510 0.95527 1.01749 0.94330 0.85715 0.78779 0.79835 0.78348 1.20037 1.20549 1.19792 1.21629 0.93207 0.91690 1.52333 0.93119 1.19393 0.87526 0.82426 0.98217 1.48160 1.44542 1.33836 1.04681 1.20163 0.95147 0.94710 0.85756 1.21551 0.93729 0.94178 0.94765 1.22150 1.02009 0.93155 1.00634 1.21981 0.93249 1.00809 0.94350 1.22518 0.98727 0.97663 0.99383 1.23267 0.97827 0.89891 0.96835 1.67495 1.04242 1.40183 1.09613 1.21681 0.80325 0.83374 0.87001 1.90551 1.39866 1.27306 1.87953 1.21562 0.90427 0.99218 0.83513 0.87406 1.86583 1.70811 1.27689 1.49541 1.21229 0.94226 1.01343 0.96968 1.19644 0.99015 0.94831 0.94966 1.21249 0.99192 0.95389 0.99063 1.21323 1.00366 1.00435 0.92822 1.21452 0.99595 0.95519 0.97789 1.21456 0.98334 0.95489 0.98890 1.21223 0.99264 1.00702 0.91610 0.92396 0.93515 0.96185 0.90097 0.88982 0.84707 0.81622 0.81076 0.80993 0.76368 0.89113 0.90352 0.87929 0.85470 0.83566 0.83202 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.94 13.29 21.45 0.28 -49.66 16 2 C 0.03 1.60 5.46 84.65 0.46 2.06 16 3 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -29.09 9.03 25.60 0.23 -28.86 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.24 11.91 4.70 85.64 0.40 12.31 16 10 N -0.58 -24.93 2.44 -830.52 -2.03 -26.96 16 11 C 0.17 6.54 5.70 85.63 0.49 7.03 16 12 C 0.10 3.42 6.36 42.55 0.27 3.69 16 13 C -0.16 -4.74 9.72 22.36 0.22 -4.52 16 14 C -0.08 -1.75 10.18 22.47 0.23 -1.52 16 15 C -0.16 -3.43 10.11 22.36 0.23 -3.20 16 16 C 0.08 2.17 11.18 84.67 0.95 3.11 16 17 N -0.51 -18.39 10.27 -183.88 -1.89 -20.28 16 18 C 0.49 19.96 6.99 87.66 0.61 20.58 16 19 O -0.57 -23.85 15.69 15.58 0.24 -23.60 16 20 C 0.12 4.38 2.56 29.85 0.08 4.45 16 21 H 0.11 4.79 7.35 -2.39 -0.02 4.77 16 22 O -0.54 -18.55 12.53 -130.36 -1.63 -20.19 16 23 C -0.10 -3.40 4.67 29.85 0.14 -3.26 16 24 C -0.08 -2.77 4.96 -19.86 -0.10 -2.87 16 25 C -0.13 -4.66 9.70 22.27 0.22 -4.45 16 26 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 27 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 28 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 29 C -0.11 -2.95 9.38 22.27 0.21 -2.74 16 30 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.05 2.30 4.11 -2.38 -0.01 2.29 16 32 H 0.02 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.08 3.37 8.07 -2.39 -0.02 3.35 16 34 H 0.09 3.42 7.40 -2.39 -0.02 3.41 16 35 H 0.14 4.01 7.81 -2.91 -0.02 3.99 16 36 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.39 10.60 8.69 -74.06 -0.64 9.96 16 40 H 0.09 2.66 8.08 -2.39 -0.02 2.64 16 41 H 0.08 3.04 5.45 -2.39 -0.01 3.03 16 42 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 43 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -66.24 391.57 2.66 -63.57 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: 0.36 Total: 39.84 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.30 Total: -7.43 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -3.63 Total: -96.90 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.39 Total: -43.79 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.24 2.66 -63.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355665992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.711 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds