Wall clock time and date at job start Tue Mar 31 2020 23:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47323 * 275.41808 * 3 2 1 5 5 H 1.48501 * 109.47249 * 35.42033 * 3 2 1 6 6 H 1.48501 * 109.46947 * 155.41613 * 3 2 1 7 7 C 1.39934 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99788 * 341.72424 * 7 2 1 9 9 C 1.41438 * 119.99955 * 161.73455 * 7 2 1 10 10 C 1.40779 * 120.17782 * 330.16893 * 9 7 2 11 11 C 1.37714 * 120.04202 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41197 * 359.78722 * 11 10 9 13 13 C 1.39890 * 120.35645 * 0.46983 * 12 11 10 14 14 C 1.47885 * 120.02306 * 179.79146 * 13 12 11 15 15 O 1.21543 * 119.99660 * 179.72920 * 14 13 12 16 16 N 1.34774 * 120.00114 * 359.71594 * 14 13 12 17 17 C 1.46505 * 119.99927 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46907 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47170 * 55.00534 * 18 17 16 20 20 C 1.52993 * 109.47497 * 294.99940 * 18 17 16 21 21 O 1.42906 * 109.47160 * 65.00365 * 20 18 17 22 22 C 1.53004 * 109.47004 * 174.99838 * 18 17 16 23 23 C 1.50692 * 109.47430 * 185.00157 * 22 18 17 24 24 C 1.38675 * 120.42090 * 270.02357 * 23 22 18 25 25 C 1.38627 * 118.42239 * 179.97438 * 24 23 22 26 26 C 1.38219 * 119.16367 * 0.02562 * 25 24 23 27 27 N 1.31858 * 120.76145 * 359.97438 * 26 25 24 28 28 C 1.31885 * 121.72638 * 0.02562 * 27 26 25 29 29 C 1.39030 * 119.94844 * 359.50886 * 13 12 11 30 30 H 0.96991 * 119.99862 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.98312 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.79208 * 180.02562 * 11 10 9 33 33 H 1.07993 * 119.82342 * 180.23898 * 12 11 10 34 34 H 0.97004 * 120.00288 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.46678 * 60.00524 * 17 16 14 36 36 H 1.09004 * 109.46875 * 300.00415 * 17 16 14 37 37 H 1.08997 * 109.47445 * 184.99900 * 20 18 17 38 38 H 1.08999 * 109.46995 * 305.00304 * 20 18 17 39 39 H 0.96697 * 113.99943 * 180.02562 * 21 20 18 40 40 H 1.09005 * 109.46639 * 65.00031 * 22 18 17 41 41 H 1.09005 * 109.47374 * 305.00488 * 22 18 17 42 42 H 1.08006 * 120.78735 * 359.95831 * 24 23 22 43 43 H 1.08000 * 120.41677 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.62415 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.61630 * 179.97438 * 28 27 26 46 46 H 1.07991 * 120.20355 * 180.22616 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3752 2.1126 -1.3938 5 1 1.5016 2.6170 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5089 -2.1237 0.2924 9 6 3.3690 -1.2424 -0.3845 10 6 3.8625 -0.3099 -1.3165 11 6 5.1880 -0.3425 -1.6887 12 6 6.0441 -1.2859 -1.1486 13 6 5.5705 -2.2240 -0.2252 14 6 6.4910 -3.2319 0.3438 15 8 6.0802 -4.0436 1.1498 16 7 7.7853 -3.2505 -0.0314 17 6 8.6971 -4.2494 0.5319 18 6 10.0958 -4.0519 -0.0555 19 1 10.4190 -3.0246 0.1129 20 6 10.0627 -4.3362 -1.5585 21 8 9.2392 -3.3660 -2.2088 22 6 11.0745 -5.0121 0.6237 23 6 12.4724 -4.7340 0.1344 24 6 12.9690 -5.3898 -0.9820 25 6 14.2603 -5.1019 -1.3962 26 6 15.0048 -4.1778 -0.6875 27 7 14.4998 -3.5732 0.3699 28 6 13.2755 -3.8222 0.7925 29 6 4.2353 -2.2043 0.1615 30 1 -0.4849 0.8400 0.0004 31 1 3.2012 0.4317 -1.7399 32 1 5.5624 0.3751 -2.4037 33 1 7.0826 -1.3004 -1.4444 34 1 8.1133 -2.6026 -0.6746 35 1 8.3374 -5.2487 0.2868 36 1 8.7385 -4.1336 1.6150 37 1 11.0742 -4.2824 -1.9609 38 1 9.6556 -5.3325 -1.7308 39 1 9.1719 -3.4854 -3.1660 40 1 10.8024 -6.0395 0.3816 41 1 11.0325 -4.8700 1.7036 42 1 12.3643 -6.1079 -1.5159 43 1 14.6792 -5.5936 -2.2618 44 1 16.0114 -3.9477 -1.0039 45 1 12.8964 -3.3076 1.6629 46 1 3.8661 -2.9242 0.8768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438694064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:15 Heat of formation + Delta-G solvation = -66.794302 kcal Electronic energy + Delta-G solvation = -28071.058753 eV Core-core repulsion = 24116.675902 eV Total energy + Delta-G solvation = -3954.382852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30457 -40.90457 -39.22512 -38.50532 -36.17225 -35.59549 -35.01807 -33.07834 -32.56843 -31.85581 -31.37125 -27.58868 -27.11337 -26.67892 -24.53319 -24.31827 -23.04156 -22.43723 -21.71217 -21.16017 -19.50089 -18.26930 -18.10002 -17.97923 -17.36278 -17.22650 -17.14421 -16.61841 -16.44915 -16.01359 -15.63170 -15.44412 -15.11991 -15.03713 -14.75797 -14.56146 -14.41044 -14.19986 -13.94271 -13.89492 -13.64913 -13.45363 -13.31279 -13.15178 -12.82539 -12.66316 -12.54300 -12.31041 -12.16779 -11.75384 -11.63492 -11.53717 -11.18923 -10.98023 -10.77512 -10.56672 -10.34145 -10.05711 -9.86130 -9.61495 -9.51604 -8.90998 -6.54448 0.19005 0.21107 0.37749 0.75129 1.25667 1.41833 1.48910 1.99014 2.13803 2.27780 2.67218 2.89203 3.27893 3.46931 3.51734 3.69572 3.84852 4.00454 4.05665 4.10815 4.14926 4.19031 4.25888 4.27707 4.43742 4.51913 4.56961 4.59915 4.61457 4.67696 4.77542 4.84235 4.90892 4.92892 4.94481 5.02594 5.16917 5.18519 5.25081 5.39705 5.43916 5.56281 5.68339 5.74287 5.83083 5.85327 6.12701 6.30887 6.65789 6.70189 6.75069 6.97033 7.07428 7.35114 8.18054 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.002049 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.250743 B =13659.055837 C =13971.998263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.967 3.033 4 H -0.246 1.246 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.083 4.083 12 C -0.179 4.179 13 C -0.113 4.113 14 C 0.555 3.445 15 O -0.593 6.593 16 N -0.698 5.698 17 C 0.124 3.876 18 C -0.085 4.085 19 H 0.082 0.918 20 C 0.079 3.921 21 O -0.591 6.591 22 C -0.062 4.062 23 C -0.131 4.131 24 C -0.077 4.077 25 C -0.168 4.168 26 C 0.076 3.924 27 N -0.517 5.517 28 C 0.084 3.916 29 C -0.168 4.168 30 H 0.295 0.705 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.419 0.581 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.398 0.602 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.159 0.841 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.090 -7.317 -7.039 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.169 4.169 3 Si 0.789 3.211 4 H -0.171 1.171 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.198 4.198 13 C -0.116 4.116 14 C 0.344 3.656 15 O -0.476 6.476 16 N -0.353 5.353 17 C 0.000 4.000 18 C -0.104 4.104 19 H 0.100 0.900 20 C 0.001 3.999 21 O -0.400 6.400 22 C -0.100 4.100 23 C -0.133 4.133 24 C -0.102 4.102 25 C -0.188 4.188 26 C -0.080 4.080 27 N -0.226 5.226 28 C -0.072 4.072 29 C -0.189 4.189 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.174 0.826 43 H 0.179 0.821 44 H 0.187 0.813 45 H 0.176 0.824 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 30.028 -6.988 -5.425 31.303 hybrid contribution -0.981 -0.217 -0.839 1.309 sum 29.046 -7.204 -6.264 30.575 Atomic orbital electron populations 1.69721 1.09258 1.31607 1.36887 1.26892 0.95442 1.04344 0.90262 0.85471 0.79523 0.76000 0.80075 1.17066 1.20373 1.17672 1.19438 0.94463 0.95719 1.42154 0.93222 1.17785 0.92527 0.92354 0.91112 1.21374 0.97360 1.03465 1.02160 1.21031 0.92322 0.98039 0.98701 1.20978 1.00084 0.97697 1.01074 1.19747 0.93456 0.97868 1.00505 1.18625 0.83070 0.83388 0.80497 1.90665 1.77952 1.42354 1.36610 1.45898 1.07578 1.35813 1.46045 1.21443 0.88629 0.91968 0.97922 1.21316 0.92759 1.01507 0.94796 0.89985 1.22360 0.94339 0.91691 0.91502 1.86230 1.71768 1.55082 1.26897 1.20420 0.88252 1.00119 1.01248 1.20871 0.97322 0.98063 0.97051 1.21872 0.95693 0.97938 0.94736 1.22463 0.95151 0.99171 1.01971 1.23195 1.01034 0.92962 0.90827 1.67685 1.14331 1.25652 1.14933 1.22925 0.89487 0.95362 0.99468 1.21197 0.92877 1.02379 1.02432 0.89454 0.87531 0.83594 0.83869 0.73951 0.91976 0.91972 0.91936 0.92616 0.75100 0.88472 0.88805 0.82597 0.82146 0.81251 0.82405 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.37 13.93 21.82 0.30 -47.06 16 2 C 0.04 2.46 5.40 85.25 0.46 2.92 16 3 Si 0.97 42.42 24.52 68.60 1.68 44.10 16 4 H -0.25 -9.78 6.71 99.48 0.67 -9.11 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.25 -11.35 6.86 99.48 0.68 -10.67 16 7 C -0.49 -28.58 9.57 23.47 0.22 -28.35 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 C 0.06 3.43 5.10 -21.32 -0.11 3.32 16 10 C -0.22 -10.28 7.17 22.77 0.16 -10.11 16 11 C -0.08 -3.11 10.01 22.18 0.22 -2.89 16 12 C -0.18 -6.45 9.55 22.70 0.22 -6.23 16 13 C -0.11 -4.87 5.87 -20.13 -0.12 -4.98 16 14 C 0.56 22.14 7.77 86.80 0.67 22.81 16 15 O -0.59 -27.91 16.33 -3.85 -0.06 -27.97 16 16 N -0.70 -19.94 4.96 -465.93 -2.31 -22.25 16 17 C 0.12 2.72 5.06 86.38 0.44 3.16 16 18 C -0.08 -1.18 2.28 -10.80 -0.02 -1.20 16 19 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 20 C 0.08 0.92 6.17 71.98 0.44 1.36 16 21 O -0.59 -8.57 10.88 -148.98 -1.62 -10.19 16 22 C -0.06 -0.60 4.86 29.85 0.15 -0.46 16 23 C -0.13 -1.46 4.73 -19.78 -0.09 -1.55 16 24 C -0.08 -0.65 8.05 22.47 0.18 -0.47 16 25 C -0.17 -1.42 10.11 22.36 0.23 -1.19 16 26 C 0.08 0.95 11.18 84.68 0.95 1.90 16 27 N -0.52 -9.14 10.36 -195.85 -2.03 -11.17 16 28 C 0.08 1.26 10.86 84.67 0.92 2.18 16 29 C -0.17 -8.66 9.34 23.01 0.21 -8.44 16 30 H 0.29 14.66 8.30 -92.72 -0.77 13.89 16 31 H 0.11 4.77 4.72 -2.91 -0.01 4.76 16 32 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.14 3.96 6.38 -2.91 -0.02 3.95 16 34 H 0.42 10.53 4.30 -92.70 -0.40 10.13 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 0.56 5.94 -2.39 -0.01 0.55 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 40 H 0.10 0.69 8.10 -2.38 -0.02 0.67 16 41 H 0.09 0.85 8.09 -2.38 -0.02 0.83 16 42 H 0.16 0.58 8.02 -2.91 -0.02 0.55 16 43 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 44 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.09 4.88 7.64 -2.91 -0.02 4.86 16 Total: -1.00 -76.28 378.18 0.98 -75.30 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.11 Total: 27.49 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 5.13 Total: -28.25 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -4.03 Total: -80.48 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.68 Total: -38.16 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.68 Total: 44.10 kcal Total: -76.28 0.98 -75.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438694064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.504 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds