Wall clock time and date at job start Tue Mar 31 2020 22:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48506 * 109.46864 * 274.99519 * 3 2 1 5 5 H 1.48505 * 109.47226 * 34.99248 * 3 2 1 6 6 H 1.48493 * 109.47525 * 154.99552 * 3 2 1 7 7 C 1.37878 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99779 * 189.57169 * 7 2 1 9 9 C 1.50689 * 120.00069 * 9.57718 * 7 2 1 10 10 C 1.53047 * 109.46316 * 185.44846 * 9 7 2 11 11 C 1.53183 * 109.31509 * 178.62685 * 10 9 7 12 12 N 1.46926 * 108.77773 * 54.63801 * 11 10 9 13 13 C 1.34772 * 120.63666 * 126.36626 * 12 11 10 14 14 O 1.21289 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00276 * 180.27682 * 13 12 11 16 16 N 1.46508 * 109.46999 * 179.72831 * 15 13 12 17 17 C 1.36540 * 118.86692 * 89.99936 * 16 15 13 18 18 C 1.34285 * 122.41194 * 179.97438 * 17 16 15 19 19 C 1.46371 * 119.41841 * 0.02562 * 18 17 16 20 20 C 1.39577 * 122.03858 * 180.02562 * 19 18 17 21 21 C 1.36726 * 119.49008 * 180.02562 * 20 19 18 22 22 C 1.38898 * 120.88962 * 359.96399 * 21 20 19 23 23 C 1.36751 * 120.88575 * 0.02562 * 22 21 20 24 24 C 1.39463 * 119.50546 * 0.02562 * 23 22 21 25 25 C 1.34782 * 118.85656 * 269.73006 * 16 15 13 26 26 O 1.21789 * 120.39233 * 0.02562 * 25 16 15 27 27 C 1.46927 * 118.73645 * 306.64221 * 12 11 10 28 28 C 1.52759 * 109.00932 * 53.30585 * 27 12 11 29 29 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46446 * 305.41845 * 9 7 2 31 31 H 1.09001 * 109.49498 * 58.67439 * 10 9 7 32 32 H 1.08995 * 109.52181 * 298.59961 * 10 9 7 33 33 H 1.08997 * 109.58766 * 294.84778 * 11 10 9 34 34 H 1.09002 * 109.70360 * 174.49076 * 11 10 9 35 35 H 1.09001 * 109.46782 * 299.71922 * 15 13 12 36 36 H 1.08997 * 109.47181 * 59.72592 * 15 13 12 37 37 H 1.07995 * 118.79023 * 359.97438 * 17 16 15 38 38 H 1.08004 * 120.29047 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.25632 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.55375 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.55865 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.25003 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.58832 * 173.14547 * 27 12 11 44 44 H 1.09005 * 109.58730 * 293.57097 * 27 12 11 45 45 H 1.09004 * 109.56643 * 185.55483 * 28 27 12 46 46 H 1.09002 * 109.38435 * 65.51834 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5955 1.4121 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2006 0.1550 9 6 1.2668 -2.4899 -0.2182 10 6 2.2327 -3.6632 -0.0376 11 6 1.4720 -4.9794 -0.2258 12 7 0.7937 -4.9514 -1.5288 13 6 0.9777 -5.9453 -2.4203 14 8 1.7087 -6.8746 -2.1501 15 6 0.2797 -5.8990 -3.7551 16 7 0.6458 -7.0814 -4.5388 17 6 -0.1169 -8.2084 -4.4271 18 6 0.1533 -9.3313 -5.1122 19 6 1.3048 -9.3630 -6.0152 20 6 1.6355 -10.5002 -6.7538 21 6 2.7233 -10.4724 -7.5816 22 6 3.5022 -9.3281 -7.6974 23 6 3.2017 -8.1995 -6.9861 24 6 2.0985 -8.1987 -6.1328 25 6 1.7207 -7.0173 -5.3495 26 8 2.3743 -5.9925 -5.4262 27 6 -0.0844 -3.8163 -1.8439 28 6 0.6894 -2.5158 -1.6353 29 1 -0.4850 0.8401 0.0004 30 1 0.4560 -2.5724 0.5057 31 1 2.6613 -3.6307 0.9641 32 1 3.0306 -3.5952 -0.7770 33 1 0.7337 -5.0915 0.5682 34 1 2.1708 -5.8153 -0.1956 35 1 -0.7993 -5.8854 -3.6005 36 1 0.5813 -4.9996 -4.2919 37 1 -0.9687 -8.1963 -3.7633 38 1 -0.4736 -10.2034 -4.9979 39 1 1.0372 -11.3956 -6.6715 40 1 2.9804 -11.3519 -8.1533 41 1 4.3570 -9.3300 -8.3574 42 1 3.8141 -7.3153 -7.0843 43 1 -0.4103 -3.8835 -2.8819 44 1 -0.9522 -3.8316 -1.1845 45 1 0.0195 -1.6667 -1.7708 46 1 1.5015 -2.4578 -2.3601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548721180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:00 Heat of formation + Delta-G solvation = -46.304530 kcal Electronic energy + Delta-G solvation = -29140.707876 eV Core-core repulsion = 25187.213527 eV Total energy + Delta-G solvation = -3953.494349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.44630 -41.02338 -39.42906 -38.50811 -37.81050 -35.38248 -34.15895 -33.14423 -32.34365 -31.89886 -30.38648 -29.34741 -27.80650 -25.21066 -24.78372 -24.38399 -23.82427 -22.69691 -21.71969 -20.10960 -19.34399 -18.88946 -18.76806 -18.32496 -18.07122 -16.96841 -16.57770 -16.38085 -16.29358 -16.16326 -16.00214 -15.45526 -14.94127 -14.93167 -14.86032 -14.71706 -14.29027 -14.26338 -14.03588 -13.72795 -13.60372 -13.31713 -13.25372 -13.15916 -12.85724 -12.80165 -12.65536 -12.52212 -12.21733 -12.02994 -12.00458 -11.54205 -11.24385 -11.20873 -10.95991 -10.87718 -10.46835 -10.41008 -10.04830 -9.64751 -8.71042 -8.15313 -6.22063 -0.25689 -0.01026 1.19809 1.35604 1.37546 1.40852 1.45454 1.49269 1.87521 2.13112 2.41777 3.00143 3.14656 3.36766 3.38311 3.66661 3.81300 3.91569 3.98060 4.07533 4.09918 4.17400 4.21675 4.29647 4.36480 4.41151 4.42594 4.52298 4.64023 4.69880 4.80424 4.90328 4.91402 4.91899 5.02414 5.12457 5.18723 5.26333 5.32195 5.45656 5.46865 5.49694 5.62316 5.63703 5.94235 5.95229 5.99316 6.09320 6.35241 6.37025 6.76913 6.86460 7.00309 7.43991 8.92266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.002424 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.310767 B =11549.929559 C =12061.286762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.042 0.958 9 C 0.046 3.954 10 C -0.115 4.115 11 C 0.120 3.880 12 N -0.597 5.597 13 C 0.498 3.502 14 O -0.581 6.581 15 C 0.079 3.921 16 N -0.504 5.504 17 C 0.104 3.896 18 C -0.199 4.199 19 C -0.006 4.006 20 C -0.123 4.123 21 C -0.079 4.079 22 C -0.139 4.139 23 C -0.076 4.076 24 C -0.186 4.186 25 C 0.531 3.469 26 O -0.576 6.576 27 C 0.112 3.888 28 C -0.114 4.114 29 H 0.263 0.737 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.118 0.882 37 H 0.194 0.806 38 H 0.188 0.812 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -23.039 -14.351 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.154 4.154 11 C -0.003 4.003 12 N -0.330 5.330 13 C 0.285 3.715 14 O -0.462 6.462 15 C -0.046 4.046 16 N -0.218 5.218 17 C -0.014 4.014 18 C -0.221 4.221 19 C -0.008 4.008 20 C -0.141 4.141 21 C -0.097 4.097 22 C -0.157 4.157 23 C -0.095 4.095 24 C -0.189 4.189 25 C 0.329 3.671 26 O -0.458 6.458 27 C -0.010 4.010 28 C -0.152 4.152 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.211 0.789 38 H 0.205 0.795 39 H 0.186 0.814 40 H 0.182 0.818 41 H 0.168 0.832 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.971 -22.742 -14.213 27.274 hybrid contribution 0.993 1.879 0.420 2.167 sum -3.978 -20.862 -13.793 25.324 Atomic orbital electron populations 1.70011 1.06692 1.27304 1.50731 1.25554 0.95612 1.01683 0.94754 0.85804 0.78940 0.80432 0.78048 1.20377 1.20571 1.20009 1.21491 0.93881 0.92841 1.49439 0.93998 1.18599 0.93804 0.91615 0.93226 1.21866 0.98264 0.94818 1.00409 1.21580 0.96631 0.97861 0.84209 1.48234 1.46478 1.21770 1.16477 1.21249 0.81846 0.81822 0.86542 1.90670 1.40122 1.36256 1.79134 1.21953 1.03783 0.90011 0.88894 1.44728 1.25891 1.13805 1.37411 1.22100 0.95805 0.84838 0.98670 1.21916 0.99794 0.99318 1.01082 1.19523 0.93666 0.92563 0.95060 1.21322 0.98645 0.97723 0.96394 1.21524 0.93276 0.98491 0.96427 1.21220 1.01602 0.92515 1.00401 1.20912 0.94754 0.99611 0.94263 1.19995 1.01259 0.94182 1.03460 1.18702 0.79769 0.88733 0.79932 1.90838 1.52850 1.33867 1.68240 1.21926 0.92357 0.84332 1.02381 1.21679 0.98747 0.96322 0.98489 0.92807 0.96593 0.91788 0.94894 0.90130 0.90754 0.81084 0.86424 0.78906 0.79464 0.81439 0.81792 0.83151 0.86552 0.87810 0.89750 0.91514 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.23 12.16 21.45 0.26 -49.97 16 2 C 0.02 1.29 5.19 84.66 0.44 1.73 16 3 Si 0.94 43.49 29.55 68.60 2.03 45.52 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -29.53 8.48 25.60 0.22 -29.31 16 8 H 0.04 2.34 7.77 -2.91 -0.02 2.32 16 9 C 0.05 2.22 1.93 -11.51 -0.02 2.19 16 10 C -0.12 -4.88 5.30 30.67 0.16 -4.72 16 11 C 0.12 4.30 6.44 86.36 0.56 4.86 16 12 N -0.60 -20.09 2.98 -819.75 -2.44 -22.53 16 13 C 0.50 16.54 7.76 87.66 0.68 17.22 16 14 O -0.58 -23.59 15.84 -3.06 -0.05 -23.64 16 15 C 0.08 1.95 4.11 85.63 0.35 2.30 16 16 N -0.50 -13.32 2.10 -648.66 -1.36 -14.68 16 17 C 0.10 1.85 10.16 83.06 0.84 2.70 16 18 C -0.20 -3.08 10.03 23.48 0.24 -2.84 16 19 C -0.01 -0.13 5.89 -20.06 -0.12 -0.25 16 20 C -0.12 -1.68 9.83 22.24 0.22 -1.46 16 21 C -0.08 -1.01 9.96 22.07 0.22 -0.79 16 22 C -0.14 -2.41 9.96 22.08 0.22 -2.19 16 23 C -0.08 -1.95 9.62 22.22 0.21 -1.74 16 24 C -0.19 -5.23 5.90 -19.99 -0.12 -5.34 16 25 C 0.53 17.83 7.61 86.45 0.66 18.49 16 26 O -0.58 -23.94 16.06 -4.63 -0.07 -24.01 16 27 C 0.11 3.51 6.31 86.22 0.54 4.06 16 28 C -0.11 -4.89 5.19 30.53 0.16 -4.74 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.02 0.82 8.09 -2.38 -0.02 0.80 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 2.75 7.00 -2.39 -0.02 2.74 16 35 H 0.17 2.34 7.78 -2.39 -0.02 2.32 16 36 H 0.12 3.23 6.88 -2.39 -0.02 3.21 16 37 H 0.19 1.79 7.98 -2.91 -0.02 1.77 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.12 3.23 7.80 -2.91 -0.02 3.21 16 43 H 0.10 2.49 5.93 -2.39 -0.01 2.48 16 44 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 45 H 0.07 3.16 6.87 -2.39 -0.02 3.14 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.55 377.02 4.82 -74.74 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.99 Total: 14.40 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.46 Total: 0.17 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.54 Total: -87.18 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.12 Total: -47.65 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -79.55 4.82 -74.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548721180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.433 kcal (2) G-P(sol) polarization free energy of solvation -79.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds